Aliases for ANKRD18DP Gene
External Ids for ANKRD18DP Gene
- HGNC: 28016
- Entrez Gene: 348840
- Ensembl: ENSG00000226435
Previous GeneCards Identifiers for ANKRD18DP Gene
- GC03M197781
Summaries for ANKRD18DP Gene
GeneCards Summary for ANKRD18DP Gene
ANKRD18DP (Ankyrin Repeat Domain 18D, Pseudogene) is a Pseudogene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD18DP Gene
Genomics for ANKRD18DP Gene
Regulatory Elements for ANKRD18DP Gene
Enhancers for ANKRD18DP Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH03G198079 | 1 | ENCODE | 9.3 | 0.0 | -12 | 1.7 | ATF1 CREB3L1 ZNF48 ZBTB7B GLIS2 ELK1 ZNF143 FOS REST ZNF592 | ENSG00000249626 LOC220729 ANKRD18DP LMLN-AS1 FRG2FP |
| GH03G198071 | 0.9 | ENCODE | 6.5 | +8.6 | 8580 | 1.1 | PKNOX1 FOXA2 INSM2 KLF17 RAD21 TCF12 GATA2 ZNF366 ZSCAN5C RCOR1 | ANKRD18DP RNU6-821P GC03M198075 PIR31029 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around ANKRD18DP on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for ANKRD18DP Gene
- Chromosome:
- 3
- Start:
- 198,053,522 bp from pter
- End:
- 198,080,720 bp from pter
- Size:
- 27,199 bases
- Orientation:
- Minus strand
Genomic View for ANKRD18DP Gene
Genes around ANKRD18DP on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 3q29 by Ensembl
- 3q29 by Entrez Gene
- 3q29 by HGNC
ANKRD18DP Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for ANKRD18DP Gene
Proteins for ANKRD18DP Gene
Post-translational modifications for ANKRD18DP Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for ANKRD18DP
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ANKRD18DP
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- Search GeneTex for Proteins for ANKRD18DP
Assay Products
No data available for DME Specific Peptides for ANKRD18DP Gene
Domains & Families for ANKRD18DP Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ANKRD18DP Gene
Function for ANKRD18DP Gene
Phenotypes for ANKRD18DP Gene
- GenomeRNAi human phenotypes for ANKRD18DP:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for ANKRD18DP
-
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CRISPR Products
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miRNA Products
- Search ViGene Biosciences for ANKRD18DP
Inhibitory RNA Products
- Origene RNAi and shRNA products in human, mouse, rat for ANKRD18DP
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- Search ViGene Biosciences for ANKRD18DP
Clone Products
- GenScript: Custom all cDNA clones Services for ANKRD18DP
- VectorBuilder custom plasmid, inducible vectors for ANKRD18DP
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ANKRD18DP
-
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
- Search ViGene Biosciences for ANKRD18DP
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD18DP Gene
Localization for ANKRD18DP Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ANKRD18DP Gene
Transcripts for ANKRD18DP Gene
mRNA/cDNA for ANKRD18DP Gene
- (1) REFSEQ mRNAs :
- (2) Additional mRNA sequences :
- (16) Selected AceView cDNA sequences:
- (4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for ANKRD18DP Gene
CRISPR Products
- Browse CRISPR knockouts for ANKRD18DP
miRNA Products
- Search ViGene Biosciences for ANKRD18DP
Inhibitory RNA Products
- Origene RNAi and shRNA products in human, mouse, rat for ANKRD18DP
- Browse OriGene Inhibitory RNA Products For ANKRD18DP
- Search ViGene Biosciences for ANKRD18DP
Clone Products
- GenScript: Custom all cDNA clones Services for ANKRD18DP
- VectorBuilder custom plasmid, inducible vectors for ANKRD18DP
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ANKRD18DP
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for ANKRD18DP Gene
mRNA differential expression in normal tissues according to GTEx for ANKRD18DP Gene
This gene is overexpressed in Testis (x15.6), Brain - Anterior cingulate cortex (BA24) (x5.9), and Brain - Nucleus accumbens (basal ganglia) (x4.5).
NURSA nuclear receptor signaling pathways regulating expression of ANKRD18DP Gene:
ANKRD18DPSOURCE GeneReport for Unigene cluster for ANKRD18DP Gene:
Hs.512227Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD18DP Gene
Orthologs for ANKRD18DP Gene
No data available for Orthologs for ANKRD18DP Gene
Paralogs for ANKRD18DP Gene
No data available for Paralogs for ANKRD18DP Gene
Variants for ANKRD18DP Gene
| SNP ID | Clin | Chr 03 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000239184 | -- | 198,074,905(+) | CCTGA(C/T)TGTGC | intron-variant | |
| rs1000314578 | -- | 198,075,318(+) | AACTC(C/T)TTTAG | intron-variant | |
| rs1000784034 | -- | 198,081,600(+) | GCTGG(G/T)TCTCA | upstream-variant-2KB | |
| rs1000917117 | -- | 198,063,226(+) | TTCTC(C/T)CCCTG | intron-variant | |
| rs1000978709 | -- | 198,062,299(+) | AGGGC(A/G)CTTCC | intron-variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv5045n100 | CNV | gain | 25217958 |
| dgv5046n100 | CNV | gain | 25217958 |
| dgv5047n100 | CNV | gain | 25217958 |
| dgv5048n100 | CNV | gain | 25217958 |
| dgv8865n54 | CNV | gain | 21841781 |
| dgv8866n54 | CNV | gain | 21841781 |
| dgv8869n54 | CNV | gain | 21841781 |
| esv2751989 | CNV | gain | 17911159 |
| esv2759215 | CNV | gain | 17122850 |
| esv2763718 | CNV | gain+loss | 21179565 |
| esv33797 | CNV | gain+loss | 17666407 |
| esv3575649 | CNV | gain | 25503493 |
| esv3599334 | CNV | gain | 21293372 |
| esv3599335 | CNV | loss | 21293372 |
| esv3599337 | CNV | loss | 21293372 |
| esv3893855 | CNV | gain | 25118596 |
| esv3893858 | CNV | gain | 25118596 |
| nsv1012702 | CNV | gain | 25217958 |
| nsv1110772 | CNV | insertion | 24896259 |
| nsv1120468 | CNV | tandem duplication | 24896259 |
| nsv471160 | CNV | gain | 18288195 |
| nsv527527 | CNV | gain | 19592680 |
| nsv593165 | CNV | gain | 21841781 |
| nsv979916 | CNV | duplication | 23825009 |
| nsv997702 | CNV | gain | 25217958 |
Relevant External Links for ANKRD18DP Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- ANKRD18DP
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ANKRD18DP Gene
Disorders for ANKRD18DP Gene
Relevant External Links for ANKRD18DP
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- ANKRD18DP
No disorders were found for ANKRD18DP Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD18DP Gene
Publications for ANKRD18DP Gene
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
Products for ANKRD18DP Gene
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- Novus Biologicals
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- Cyagen custom Knockout/knockin (KOKI) mouse models for ANKRD18DP
- VectorBuilder custom plasmid, inducible vectors for ANKRD18DP
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ANKRD18DP
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for ANKRD18DP Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
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- (18) KEGG
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- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
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- (88) miRTarBase
- (89) MalaCards
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- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
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- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
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- (112) GeneTex
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- (155) Gene ORGANizer