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Aliases for ANKRD18CP Gene

Aliases for ANKRD18CP Gene

  • Ankyrin Repeat Domain 18C, Pseudogene 2 3 5

External Ids for ANKRD18CP Gene

Previous GeneCards Identifiers for ANKRD18CP Gene

  • GC09M099919
  • GC09M099921
  • GC09M099928
  • GC09M097156

Summaries for ANKRD18CP Gene

GeneCards Summary for ANKRD18CP Gene

ANKRD18CP (Ankyrin Repeat Domain 18C, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD18CP Gene

Genomics for ANKRD18CP Gene

Regulatory Elements for ANKRD18CP Gene

Enhancers for ANKRD18CP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F097236 0.5 ENCODE 32.2 -17.1 -17080 2.9 CREB3L1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF143 ZNF263 SP3 REST ANKRD18CP CCDC180 XPA LOC441454 ZNF322P1 MFSD14C NCBP1 LOC100421693 LOC105376165 LOC100499484
GH09F097220 0.2 ENCODE 27.3 +0.1 63 3.0 BCOR CTCF TEAD4 UBTF RAD21 E2F1 CTBP1 POLR2A ZNF547 ZSCAN29 VN1R51P ANKRD18CP CCDC180 GC09M097223 PIR49577
GH09F097219 0.7 ENCODE 25.3 +1.7 1705 0.2 POLR2A VN1R51P ANKRD18CP GC09M097223 PIR49577 ZNF322P1
GH09F097292 1 Ensembl ENCODE 21.2 -72.2 -72207 1.8 ELF3 PKNOX1 MLX ARID4B DMAP1 RARA CREM MXD4 NR2F2 KAT8 CCDC180 ANKRD18CP ENSG00000203279 ENSG00000254633
GH09F097306 0.6 ENCODE 21.2 -86.3 -86311 1.6 ATF1 CBX3 PKNOX1 TBL1XR1 ARNT RAD21 GATA2 EGR1 FOS CREM CCDC180 ANKRD18CP ENSG00000203279 LOC105376165 MIR1302-8
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ANKRD18CP on UCSC Golden Path with GeneCards custom track

Promoters for ANKRD18CP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001309411 18 1401 BCOR CTCF UBTF RAD21 E2F1 CTBP1 POLR2A ZNF547 ZSCAN29 ZNF600

Genomic Location for ANKRD18CP Gene

Chromosome:
9
Start:
97,148,127 bp from pter
End:
97,221,318 bp from pter
Size:
73,192 bases
Orientation:
Minus strand

Genomic View for ANKRD18CP Gene

Genes around ANKRD18CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD18CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD18CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD18CP Gene

Proteins for ANKRD18CP Gene

Post-translational modifications for ANKRD18CP Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANKRD18CP Gene

Domains & Families for ANKRD18CP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ANKRD18CP Gene

Function for ANKRD18CP Gene

Animal Model Products

miRNA for ANKRD18CP Gene

miRTarBase miRNAs that target ANKRD18CP

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ANKRD18CP Gene

Localization for ANKRD18CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ANKRD18CP Gene

Pathways & Interactions for ANKRD18CP Gene

SuperPathways for ANKRD18CP Gene

No Data Available

Interacting Proteins for ANKRD18CP Gene

Gene Ontology (GO) - Biological Process for ANKRD18CP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ANKRD18CP Gene

Transcripts for ANKRD18CP Gene

mRNA/cDNA for ANKRD18CP Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD18CP Gene

No ASD Table

Relevant External Links for ANKRD18CP Gene

GeneLoc Exon Structure for
ANKRD18CP
ECgene alternative splicing isoforms for
ANKRD18CP

Expression for ANKRD18CP Gene

mRNA expression in normal human tissues for ANKRD18CP Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD18CP Gene

This gene is overexpressed in Testis (x12.7).

NURSA nuclear receptor signaling pathways regulating expression of ANKRD18CP Gene:

ANKRD18CP
genes like me logo Genes that share expression patterns with ANKRD18CP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ANKRD18CP Gene

Orthologs for ANKRD18CP Gene

Evolution for ANKRD18CP Gene

ENSEMBL:
Gene Tree for ANKRD18CP (if available)
TreeFam:
Gene Tree for ANKRD18CP (if available)

No data available for Orthologs for ANKRD18CP Gene

Paralogs for ANKRD18CP Gene

No data available for Paralogs for ANKRD18CP Gene

Variants for ANKRD18CP Gene

Sequence variations from dbSNP and Humsavar for ANKRD18CP Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs10115647 -- 97,202,521(+) ATGCG(A/C/G)TTCAG intron-variant
rs10116019 -- 97,220,263(+) TCACA(C/T)AGCAG intron-variant
rs10119245 -- 97,220,488(+) TTTTT(A/C)AATGT intron-variant
rs10123817 -- 97,222,716(+) GACCC(C/G)GTCTT intron-variant
rs10125824 -- 97,233,255(+) AACCC(A/G)TATCT intron-variant

Relevant External Links for ANKRD18CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD18CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ANKRD18CP Gene

Disorders for ANKRD18CP Gene

Relevant External Links for ANKRD18CP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ANKRD18CP

No disorders were found for ANKRD18CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD18CP Gene

Publications for ANKRD18CP Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ANKRD18CP Gene

Sources for ANKRD18CP Gene

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