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Aliases for ANKRD18B Gene

Aliases for ANKRD18B Gene

  • Ankyrin Repeat Domain 18B 2 3
  • Ankyrin Repeat Domain-Containing Protein 18B 3
  • BA255A11.3 3
  • BA255A11.5 3

External Ids for ANKRD18B Gene

Previous GeneCards Identifiers for ANKRD18B Gene

  • GC09P033516
  • GC09U900806

Summaries for ANKRD18B Gene

GeneCards Summary for ANKRD18B Gene

ANKRD18B (Ankyrin Repeat Domain 18B) is a Protein Coding gene. An important paralog of this gene is POTEJ.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD18B Gene

Genomics for ANKRD18B Gene

Regulatory Elements for ANKRD18B Gene

Genomic Location for ANKRD18B Gene

Start:
33,524,349 bp from pter
End:
33,575,725 bp from pter
Size:
51,377 bases
Orientation:
Plus strand

Genomic View for ANKRD18B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ANKRD18B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD18B Gene

Proteins for ANKRD18B Gene

  • Protein details for ANKRD18B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A2A2Z9-AN18B_HUMAN
    Recommended name:
    Ankyrin repeat domain-containing protein 18B
    Protein Accession:
    A2A2Z9
    Secondary Accessions:

    Protein attributes for ANKRD18B Gene

    Size:
    1011 amino acids
    Molecular mass:
    118231 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ANKRD18B Gene

Proteomics data for ANKRD18B Gene at MOPED

Post-translational modifications for ANKRD18B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ANKRD18B Gene

No data available for DME Specific Peptides for ANKRD18B Gene

Domains for ANKRD18B Gene

Gene Families for ANKRD18B Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing

Protein Domains for ANKRD18B Gene

Suggested Antigen Peptide Sequences for ANKRD18B Gene

Graphical View of Domain Structure for InterPro Entry

A2A2Z9

UniProtKB/Swiss-Prot:

AN18B_HUMAN :
  • A2A2Z9
Similarity:
  • Contains 5 ANK repeats.
genes like me logo Genes that share domains with ANKRD18B: view

Function for ANKRD18B Gene

Gene Ontology (GO) - Molecular Function for ANKRD18B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding --
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with ANKRD18B: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ANKRD18B Gene

Localization for ANKRD18B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ANKRD18B Gene COMPARTMENTS Subcellular localization image for ANKRD18B gene
Compartment Confidence
nucleus 3
cytosol 2
mitochondrion 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ANKRD18B Gene

Pathways for ANKRD18B Gene

SuperPathways for ANKRD18B Gene

No Data Available

Gene Ontology (GO) - Biological Process for ANKRD18B Gene

None

No data available for Pathways by source for ANKRD18B Gene

Transcripts for ANKRD18B Gene

mRNA/cDNA for ANKRD18B Gene

(8) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ANKRD18B Gene

Ankyrin repeat domain 18B:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ANKRD18B

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for ANKRD18B
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD18B Gene

No ASD Table

Relevant External Links for ANKRD18B Gene

GeneLoc Exon Structure for
ANKRD18B
ECgene alternative splicing isoforms for
ANKRD18B

Expression for ANKRD18B Gene

mRNA expression in normal human tissues for ANKRD18B Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD18B Gene

This gene is overexpressed in Brain - Cerebellum (11.2), Brain - Cerebellar Hemisphere (9.5), and Testis (5.4).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ANKRD18B Gene

SOURCE GeneReport for Unigene cluster for ANKRD18B Gene Hs.493710

genes like me logo Genes that share expressions with ANKRD18B: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for ANKRD18B Gene

Orthologs for ANKRD18B Gene

This gene was present in the common ancestor of chordates.

Orthologs for ANKRD18B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ANKRD18B 36
  • 98 (a)
OneToOne
LOC746826 35
  • 98.94 (n)
  • 97.82 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 27 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 13 (a)
ManyToMany
-- 36
  • 44 (a)
ManyToMany
-- 36
  • 20 (a)
ManyToMany
-- 36
  • 21 (a)
ManyToMany
-- 36
  • 21 (a)
ManyToMany
-- 36
  • 33 (a)
ManyToMany
-- 36
  • 42 (a)
ManyToMany
-- 36
  • 45 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm1758 36
  • 37 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 14 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 36
  • 18 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 42 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii ANKRD7 36
  • 12 (a)
OneToMany
Species with no ortholog for ANKRD18B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ANKRD18B Gene

ENSEMBL:
Gene Tree for ANKRD18B (if available)
TreeFam:
Gene Tree for ANKRD18B (if available)

Paralogs for ANKRD18B Gene

genes like me logo Genes that share paralogs with ANKRD18B: view

Variants for ANKRD18B Gene

Sequence variations from dbSNP and Humsavar for ANKRD18B Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs474310 -- 33,538,918(+) TAATT(A/G)TCAAA intron-variant
rs475213 -- 33,538,993(+) CTTTA(A/G)GGTGC intron-variant
rs478775 -- 33,532,805(+) CCTGA(A/G)ACTCT intron-variant
rs480436 -- 33,542,420(+) ctctg(A/T)caccc intron-variant
rs482626 -- 33,533,245(+) GTTAA(C/T)ATGGG intron-variant

Relevant External Links for ANKRD18B Gene

HapMap Linkage Disequilibrium report
ANKRD18B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ANKRD18B Gene

Disorders for ANKRD18B Gene

No disorders were found for ANKRD18B Gene.

No data available for UniProtKB/Swiss-Prot for ANKRD18B Gene

Publications for ANKRD18B Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PMID: 21906983) Kim W. … Gygi S.P. (Mol. Cell 2011) 3
  3. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 4
  4. Initial characterization of the human central proteome. (PMID: 21269460) Burkard T.R. … Colinge J. (BMC Syst. Biol. 2011) 4

Products for ANKRD18B Gene

Sources for ANKRD18B Gene

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