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Aliases for ANKRD18A Gene

Aliases for ANKRD18A Gene

  • Ankyrin Repeat Domain 18A 2 3 5
  • KIAA2015 4

External Ids for ANKRD18A Gene

Previous GeneCards Identifiers for ANKRD18A Gene

  • GC09U900260
  • GC09M038531
  • GC09M038532
  • GC09M038544
  • GC09M038524
  • GC09M038546
  • GC09M038549
  • GC09M038555
  • GC09M038563
  • GC09M038588
  • GC09M038603
  • GC09M038620
  • GC09M038642
  • GC09M038661
  • GC09M038675
  • GC09M038693

Summaries for ANKRD18A Gene

GeneCards Summary for ANKRD18A Gene

ANKRD18A (Ankyrin Repeat Domain 18A) is a Protein Coding gene. An important paralog of this gene is ANKRD18B.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD18A Gene

Genomics for ANKRD18A Gene

Regulatory Elements for ANKRD18A Gene

Enhancers for ANKRD18A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G038619 1.1 ENCODE 12.8 +0.0 49 2.0 HDGF ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 ZNF263 ANKRD18A FAM201A
GH09G038642 0.7 ENCODE 11.6 -21.5 -21479 0.2 CTCF PKNOX1 ZIC2 RAD21 CTBP1 ZNF366 SMC3 PRDM10 ZNF263 ZNF654 RNU6-765P ANKRD18A GC09M038709
GH09G038621 0.7 ENCODE 6 -1.3 -1299 0.1 ZNF777 SUZ12 SIN3A ZIC2 ZNF335 POLR2A ZBTB20 EZH2 CBX2 ZBTB8A ANKRD18A GC09M038709
GH09G038478 0.4 FANTOM5 1.8 +141.9 141910 0.0 ATF2 ANKRD18A TCEA1P3 PIR43232
GH09G038622 0.7 ENCODE 0.7 -1.4 -1379 0.0 ZNF777 SUZ12 SIN3A ZIC2 ZNF335 POLR2A ZBTB20 EZH2 CBX2 ZBTB8A ANKRD18A GC09M038709
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ANKRD18A on UCSC Golden Path with GeneCards custom track

Promoters for ANKRD18A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000235005 -140 1601 HDGF ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 ZNF263

Genomic Location for ANKRD18A Gene

Chromosome:
9
Start:
38,542,965 bp from pter
End:
38,620,660 bp from pter
Size:
77,696 bases
Orientation:
Minus strand

Genomic View for ANKRD18A Gene

Genes around ANKRD18A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD18A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD18A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD18A Gene

Proteins for ANKRD18A Gene

  • Protein details for ANKRD18A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IVF6-AN18A_HUMAN
    Recommended name:
    Ankyrin repeat domain-containing protein 18A
    Protein Accession:
    Q8IVF6
    Secondary Accessions:
    • A7MD11
    • A8MVU5
    • Q5SY86
    • Q7Z468
    • Q8NA88

    Protein attributes for ANKRD18A Gene

    Size:
    992 amino acids
    Molecular mass:
    115597 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH56266.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=BAC23111.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for ANKRD18A Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ANKRD18A Gene

Post-translational modifications for ANKRD18A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ANKRD18A Gene

Domains & Families for ANKRD18A Gene

Gene Families for ANKRD18A Gene

Protein Domains for ANKRD18A Gene

Suggested Antigen Peptide Sequences for ANKRD18A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ANKRD18A: view

No data available for UniProtKB/Swiss-Prot for ANKRD18A Gene

Function for ANKRD18A Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ANKRD18A Gene

Localization for ANKRD18A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ANKRD18A gene
Compartment Confidence
nucleus 2
cytosol 2
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ANKRD18A Gene

Pathways & Interactions for ANKRD18A Gene

SuperPathways for ANKRD18A Gene

No Data Available

Gene Ontology (GO) - Biological Process for ANKRD18A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ANKRD18A Gene

Transcripts for ANKRD18A Gene

Unigene Clusters for ANKRD18A Gene

Ankyrin repeat domain 18A:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD18A Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b
SP1:
SP2: -
SP3:
SP4:

Relevant External Links for ANKRD18A Gene

GeneLoc Exon Structure for
ANKRD18A
ECgene alternative splicing isoforms for
ANKRD18A

Expression for ANKRD18A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ANKRD18A Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD18A Gene

This gene is overexpressed in Testis (x7.5) and Brain - Spinal cord (cervical c-1) (x5.6).

Protein differential expression in normal tissues from HIPED for ANKRD18A Gene

This gene is overexpressed in Plasma (33.9) and Urine (26.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ANKRD18A Gene



Protein tissue co-expression partners for ANKRD18A Gene

NURSA nuclear receptor signaling pathways regulating expression of ANKRD18A Gene:

ANKRD18A

SOURCE GeneReport for Unigene cluster for ANKRD18A Gene:

Hs.644630
genes like me logo Genes that share expression patterns with ANKRD18A: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD18A Gene

Orthologs for ANKRD18A Gene

This gene was present in the common ancestor of chordates.

Orthologs for ANKRD18A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ANKRD18A 34 35
  • 98.69 (n)
dog
(Canis familiaris)
Mammalia -- 35
  • 44 (a)
ManyToMany
-- 35
  • 41 (a)
ManyToMany
-- 35
  • 40 (a)
ManyToMany
-- 35
  • 33 (a)
ManyToMany
-- 35
  • 21 (a)
ManyToMany
-- 35
  • 20 (a)
ManyToMany
-- 35
  • 19 (a)
ManyToMany
-- 35
  • 12 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm1758 35
  • 35 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia -- 35
  • 28 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 14 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 35
  • 17 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 42 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii ANKRD7 35
  • 12 (a)
OneToMany
Species where no ortholog for ANKRD18A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ANKRD18A Gene

ENSEMBL:
Gene Tree for ANKRD18A (if available)
TreeFam:
Gene Tree for ANKRD18A (if available)

Paralogs for ANKRD18A Gene

Variants for ANKRD18A Gene

Sequence variations from dbSNP and Humsavar for ANKRD18A Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000011424 -- 38,583,903(+) AGTGT(C/G)TACAC intron-variant
rs1000073092 -- 38,577,467(+) AATCA(C/T)ACTTA intron-variant
rs1000078186 -- 38,585,303(+) CCAGT(C/T)TTAGA intron-variant
rs1000195640 -- 38,608,149(+) AAATA(-/TAT)TATTA intron-variant
rs1000224278 -- 38,601,281(+) CAACA(C/T)ACACT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ANKRD18A Gene

Variant ID Type Subtype PubMed ID
dgv261e55 CNV loss 17911159
esv27275 CNV loss 19812545
esv3620429 CNV loss 21293372
nsv1020605 CNV gain 25217958
nsv1028978 CNV loss 25217958
nsv1125318 OTHER inversion 24896259
nsv428211 CNV loss 18775914
nsv6539 CNV insertion 18451855
nsv8445 CNV gain+loss 18304495
nsv982218 CNV duplication 23825009

Variation tolerance for ANKRD18A Gene

Gene Damage Index Score: 13.27; 95.29% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ANKRD18A Gene

Human Gene Mutation Database (HGMD)
ANKRD18A
SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD18A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ANKRD18A Gene

Disorders for ANKRD18A Gene

Relevant External Links for ANKRD18A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ANKRD18A

No disorders were found for ANKRD18A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD18A Gene

Publications for ANKRD18A Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD. (PMID: 25158072) Yu D. … Pauls D.L. (Am J Psychiatry 2015) 3 64
  3. ANKRD18A as a novel epigenetic regulation gene in lung cancer. (PMID: 23131552) Liu W.B. … Liu J.Y. (Biochem. Biophys. Res. Commun. 2012) 3 64
  4. Proteomic and biochemical analysis of 14-3-3-binding proteins during C2-ceramide-induced apoptosis. (PMID: 20618440) Pozuelo-Rubio M. (FEBS J. 2010) 3 64
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for ANKRD18A Gene

Sources for ANKRD18A Gene

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