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ANKRD16 Gene

protein-coding   GIFtS: 45
GCID: GC10M005920

Ankyrin Repeat Domain 16

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Ankyrin Repeat Domain 161 2
Ankyrin Repeat Domain-Containing Protein 162

External Ids:    HGNC: 234711   Entrez Gene: 545222   Ensembl: ENSG000001344617   UniProtKB: Q6P6B73   

Export aliases for ANKRD16 gene to outside databases

Previous GC identifers: GC10M005907 GC10M005942 GC10M005905 GC10M005906 GC10M005830 GC10M005909 GC10M005911 GC10M005912 GC10M005914 GC10M005916 GC10M005918


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ANKRD16 Gene:
ANKRD16 (ankyrin repeat domain 16) is a protein-coding gene. Diseases associated with ANKRD16 include obesity, and breast cancer. An important paralog of this gene is TRPA1.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000010.11  NC_018921.2  NT_008705.17  
Regulatory elements:
   Regulatory transcription factor binding sites in the ANKRD16 gene promoter:
         Brachyury   CUTL1   Tal-1beta   LCR-F1   YY1   SRY   Sox9   c-Myb   SEF-1 (1)   ITF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): ANKRD16 promoter sequence
   Search Chromatin IP Primers for ANKRD16

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ANKRD16


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10p15.1   Ensembl cytogenetic band:  10p15.1   HGNC cytogenetic band: 10p15.1

ANKRD16 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ANKRD16 gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10M005920:  view genomic region     (about GC identifiers)

Start:
5,903,580 bp from pter      End:
5,931,869 bp from pter
Size:
28,290 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: ANR16_HUMAN, Q6P6B7 (See protein sequence)
Recommended Name: Ankyrin repeat domain-containing protein 16  
Size: 361 amino acids; 39284 Da
Secondary accessions: A6NEF0 F8WEI4 Q9NT01
Alternative splicing: 2 isoforms:  Q6P6B7-1   Q6P6B7-2   (Gene prediction based on EST data)

Explore the universe of human proteins at neXtProt for ANKRD16: NX_Q6P6B7

Explore proteomics data for ANKRD16 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ANKRD16 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (3 alternative transcripts): 
    NP_001009941.1  NP_001009943.1  NP_061919.1  

    ENSEMBL proteins: 
     ENSP00000369436   ENSP00000369434   ENSP00000352361  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ANKRD: Ankyrin repeat domain containing

    2 InterPro protein domains:
     IPR002110 Ankyrin_rpt
     IPR020683 Ankyrin_rpt-contain_dom

    Graphical View of Domain Structure for InterPro Entry Q6P6B7

    ProtoNet protein and cluster: Q6P6B7

    1 Blocks protein domain: IPB002110 Ankyrin repeat signature

    UniProtKB/Swiss-Prot: ANR16_HUMAN, Q6P6B7
    Similarity: Contains 9 ANK repeats


    ANKRD16 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
         
    ANKRD16 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for ANKRD16:
     Increased gamma-H2AX phosphory 

    Animal Models:
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol3
    extracellular2
    nucleus1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ANKRD16
    Interactions:

        Search GeneGlobe Interaction Network for ANKRD16

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ANKRD16 (ANR16)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for ANKRD16 gene (4 alternative transcripts): 
    NM_001009942.2  NM_001009941.2  NM_001009943.2  NM_019046.2  

    Unigene Cluster for ANKRD16:

    Ankyrin repeat domain 16
    Hs.289828  [show with all ESTs]
    Unigene Representative Sequence: NM_019046
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000380094(uc010qat.2 uc009xie.3 uc009xif.3 uc001iiq.3)
    ENST00000380092 ENST00000191063 ENST00000492368
    miRNA
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      QuantiTect SYBR Green Assays in human, mouse, rat ANKRD16
      QuantiFast Probe-based Assays in human, mouse, rat ANKRD16

    Additional mRNA sequence: 

    AL137614.1 BC017324.1 BC062346.1 BC067892.1 

    10 DOTS entries:

    DT.97826824  DT.405974  DT.92422768  DT.101955438  DT.92422774  DT.100781381  DT.95268678  DT.99932784 
    DT.121218323  DT.75166529 

    Selected AceView cDNA sequences (see all 76):

    CK299770 BQ575527 CR619405 BF057133 CR605844 CR608136 CR616690 AI341458 
    CR614996 BC062346 AW630454 AW630443 BX332103 AL537018 AW002570 AA431197 
    AI887025 AI826110 BI560600 AW470888 CD674804 BQ270380 AI809942 AI369394 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ANKRD16 expression in normal human tissues (normalized intensities)      ANKRD16 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GTAATTCAAA
    ANKRD16 Expression
    About this image


    ANKRD16 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     
     Eye (Sensory Organs)
             Retina
    ANKRD16 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ANKRD16 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.289828
        Custom PCR Arrays for ANKRD16
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ANKRD16

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for ANKRD16 gene from Selected species (see all 14)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ankrd161 , 5 ankyrin repeat domain 161, 5 82.54(n)1
    82.63(a)1
      2 (9.05 cM)5
    3208161  NM_177268.41  NP_796242.21 
     117778765 
    chicken
    (Gallus gallus)
    Aves ANKRD161 ankyrin repeat domain 16 69.66(n)
    69.86(a)
      416688  NM_001199314.1  NP_001186243.1 
    lizard
    (Anolis carolinensis)
    Reptilia ANKRD166
    ankyrin repeat domain 16
    64(a)
    1 ↔ 1
    5(3867519-3894524)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.149682 Xenopus laevis transcribed sequence with weak similarity more 73.08(n)    BX849655.1 
    zebrafish
    (Danio rerio)
    Actinopterygii ankrd161 ankyrin repeat domain 16 62.36(n)
    60.96(a)
      550225  NM_001017563.2  NP_001017563.2 
    fruit fly
    (Drosophila melanogaster)
    Insecta pain6
    painless
    7(a)
    1 ↔ 1
    2R(20809028-20815798)


    ENSEMBL Gene Tree for ANKRD16 (if available)
    TreeFam Gene Tree for ANKRD16 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ANKRD16 gene
    TRPA12  
    4 SIMAP similar genes for ANKRD16 using alignment to 1 protein entry:     ANR16_HUMAN:
    ANKDD1A    IkBa    DKFZp761E1322    MTPN

    ANKRD16 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ANKRD16 (see all 722)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 10 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs562641541,2
    C--5836482(+) AAAAA-/AAAAA 
     
    /AAAAAA
    GGAAG
    6 -- int1 cds11NA 2
    rs1394794141,2
    --5903263(+) GCGCAC/TGGTGG 1 -- ds50010--------
    rs1824048181,2
    --5903349(+) TGAGCC/TGAGAT 1 -- ds50010--------
    rs1452787941,2
    --5903379(+) CTGGGC/TGGCAG 1 -- ds50010--------
    rs1472220341,2
    C--5903380(+) TGGGCA/GGCAGA 1 -- ds50010--------
    rs1404611531,2
    --5903381(+) GGGCGA/GCAGAG 1 -- ds50010--------
    rs748819201,2
    C,F--5903395(+) CTCTGA/TCTCAT 1 -- ds50011Minor allele frequency- T:0.12WA 118
    rs70849041,2
    C,F--5903504(+) TGCTAC/TAAAGT 1 -- ds50019Minor allele frequency- T:0.15NA WA EA 370
    rs70715361,2
    C,F,H--5903518(+) AAGCAG/TGAACA 1 -- ds500121Minor allele frequency- T:0.17NS EA NA WA 2234
    rs1996219971,2
    C--5903523(+) GGAAC-/AGGGGC 1 -- ds50010--------

    HapMap Linkage Disequilibrium report for ANKRD16 (5903580 - 5931869 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 9 variations for ANKRD16:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2676037CNV Deletion23128226
    esv2668731CNV Deletion23128226
    nsv519773CNV Loss19592680
    nsv437655CNV Loss16327808
    nsv831775CNV Loss17160897
    dgv1e49CNV Loss18971310
    nsv5654CNV Loss18451855
    nsv520941CNV Loss19592680
    nsv825229CNV Gain20364138

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    2 diseases for ANKRD16:    About MalaCards
    obesity    breast cancer


    ANKRD16 for disorders           About GeneDecksing


    Export disorders for ANKRD16 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ANKRD16 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with ANKRD16)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    2. The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)1, 2 Deloukas P.... Rogers J. (Nature 2004)
    3. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PubMed id 23251661)1 Comuzzie A.G....Butte N.F. (PLoS ONE 2012)
    4. Genome-wide association study identifies five new breast cancer susceptibility loci. (PubMed id 20453838)1 Turnbull C....Easton D.F. (Nat. Genet. 2010)
    5. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332)2 Mayya V.... Han D.K. (Sci. Signal. 2009)
    6. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (Genomics 2007)
    7. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (BMC Genomics 2007)
    8. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (Nat. Genet. 2004)
    9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 54522 HGNC: 23471 AceView: ANKRD16 Ensembl:ENSG00000134461 euGenes: HUgn54522
    ECgene: ANKRD16 H-InvDB: ANKRD16

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ANKRD16 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ANKRD16 gene:
    Search GeneIP for patents involving ANKRD16

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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