Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ANKMY1 Gene

Aliases for ANKMY1 Gene

  • Ankyrin Repeat And MYND Domain Containing 1 2 3
  • Zinc Finger MYND Domain-Containing Protein 13 3 4
  • Testis-Specific Ankyrin-Like Protein 1 3 4
  • ZMYND13 3 4
  • Ankyrin Repeat And MYND Domain-Containing Protein 1 3
  • Testis Specific Ankyrin-Like Protein 1 3
  • TSAL1 4

External Ids for ANKMY1 Gene

Summaries for ANKMY1 Gene

GeneCards Summary for ANKMY1 Gene

ANKMY1 (Ankyrin Repeat And MYND Domain Containing 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKMY1 Gene

Genomics for ANKMY1 Gene

Genomic Location for ANKMY1 Gene

Start:
240,479,422 bp from pter
End:
240,569,209 bp from pter
Size:
89,788 bases
Orientation:
Minus strand

Genomic View for ANKMY1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ANKMY1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKMY1 Gene

Regulatory Elements for ANKMY1 Gene

Proteins for ANKMY1 Gene

  • Protein details for ANKMY1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9P2S6-ANKY1_HUMAN
    Recommended name:
    Ankyrin repeat and MYND domain-containing protein 1
    Protein Accession:
    Q9P2S6
    Secondary Accessions:
    • B2RB78
    • Q4ZFV3
    • Q8IYX5
    • Q8NDK5
    • Q9H0V8
    • Q9NX10

    Protein attributes for ANKMY1 Gene

    Size:
    941 amino acids
    Molecular mass:
    105516 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ANKMY1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ANKMY1 Gene

Proteomics data for ANKMY1 Gene at MOPED

Post-translational modifications for ANKMY1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ANKMY1 Gene

Domains for ANKMY1 Gene

Gene Families for ANKMY1 Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing
  • ZMYND :Zinc fingers, MYND-type

Protein Domains for ANKMY1 Gene

UniProtKB/Swiss-Prot:

ANKY1_HUMAN
Similarity:
  • Contains 7 ANK repeats.:
    • Q9P2S6
  • Contains 3 MORN repeats.:
    • Q9P2S6
  • Contains 1 MYND-type zinc finger.:
    • Q9P2S6
genes like me logo Genes that share domains with ANKMY1: view

Function for ANKMY1 Gene

Gene Ontology (GO) - Molecular Function for ANKMY1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ANKMY1: view

Phenotypes for ANKMY1 Gene

GenomeRNAi human phenotypes for ANKMY1:
genes like me logo Genes that share phenotypes with ANKMY1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ANKMY1 Gene

Localization for ANKMY1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ANKMY1 Gene COMPARTMENTS Subcellular localization image for ANKMY1 gene
Compartment Confidence
cytosol 2
nucleus 2

No data available for Gene Ontology (GO) - Cellular Components for ANKMY1 Gene

Pathways for ANKMY1 Gene

SuperPathways for ANKMY1 Gene

No Data Available

Interacting Proteins for ANKMY1 Gene

Gene Ontology (GO) - Biological Process for ANKMY1 Gene

None

No data available for Pathways by source for ANKMY1 Gene

Transcripts for ANKMY1 Gene

mRNA/cDNA for ANKMY1 Gene

(29) REFSEQ mRNAs :
(15) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(24) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ANKMY1 Gene

Ankyrin repeat and MYND domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ANKMY1 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19
SP1: - - - -
SP2: - - - - - - -
SP3: - - - - - - -
SP4: - - - -
SP5: - -
SP6:

Relevant External Links for ANKMY1 Gene

GeneLoc Exon Structure for
ANKMY1
ECgene alternative splicing isoforms for
ANKMY1

Expression for ANKMY1 Gene

mRNA expression in normal human tissues for ANKMY1 Gene

mRNA differential expression in normal tissues according to GTEx for ANKMY1 Gene

This gene is overexpressed in Testis (6.2).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ANKMY1 Gene

SOURCE GeneReport for Unigene cluster for ANKMY1 Gene Hs.656615

genes like me logo Genes that share expressions with ANKMY1: view

Orthologs for ANKMY1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ANKMY1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ANKMY1 36
  • 97.88 (n)
  • 97.8 (a)
ANKMY1 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ANKMY1 37
  • 69 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ANKMY1 36
  • 77.62 (n)
  • 71.36 (a)
ANKMY1 37
  • 71 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ankmy1 36
  • 73.58 (n)
  • 68.13 (a)
Ankmy1 37
  • 62 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ANKMY1 37
  • 44 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 48 (a)
OneToMany
-- 37
  • 65 (a)
OneToMany
-- 37
  • 56 (a)
OneToMany
-- 37
  • 26 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Ankmy1 36
  • 71.96 (n)
  • 66.27 (a)
chicken
(Gallus gallus)
Aves ANKMY1 36
  • 58.56 (n)
  • 53.32 (a)
ANKMY1 37
  • 49 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ANKMY1 37
  • 41 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ankmy1 36
  • 56.46 (n)
  • 51.25 (a)
zebrafish
(Danio rerio)
Actinopterygii ankmy1 36
  • 49.5 (n)
  • 41.42 (a)
ankmy1 37
  • 35 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 37 (a)
OneToOne
Species with no ortholog for ANKMY1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ANKMY1 Gene

ENSEMBL:
Gene Tree for ANKMY1 (if available)
TreeFam:
Gene Tree for ANKMY1 (if available)

Paralogs for ANKMY1 Gene

genes like me logo Genes that share paralogs with ANKMY1: view

No data available for Paralogs for ANKMY1 Gene

Variants for ANKMY1 Gene

Sequence variations from dbSNP and Humsavar for ANKMY1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs3796118 - 240,524,098(+) ACACG(A/T)CCTCA reference, missense, intron-variant
rs3796119 -- 240,524,222(+) GCCCT(C/T)GTGGC missense, reference, intron-variant
rs3796120 -- 240,529,536(+) CCGAG(A/G)AGAGA intron-variant
rs3821348 - 240,524,036(+) ACACA(A/C)GTTGG reference, missense, intron-variant
rs4073020 -- 240,479,507(-) GGCAT(G/T)TCTGC utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for ANKMY1 Gene

Variant ID Type Subtype PubMed ID
nsv876116 CNV Loss 21882294
nsv876125 CNV Loss 21882294
nsv508899 CNV Insertion 20534489
nsv876127 CNV Loss 21882294
dgv1295e1 CNV Complex 17122850
nsv876132 CNV Loss 21882294
nsv876133 CNV Loss 21882294
essv1993 CNV CNV 17122850
nsv876136 CNV Loss 21882294
nsv834586 CNV Loss 17160897
nsv3239 CNV Insertion 18451855
nsv10226 CNV Gain 18304495
nsv515975 CNV Gain 19592680
esv2721934 CNV Deletion 23290073
dgv4471n71 CNV Loss 21882294
nsv876138 CNV Gain 21882294
nsv438384 CNV Loss 16468122
esv5720 OTHER Inversion 19470904
dgv4472n71 CNV Loss 21882294
nsv819352 CNV Loss 19587683
nsv876144 CNV Loss 21882294
esv1184193 CNV Insertion 17803354
dgv4473n71 CNV Loss 21882294
nsv876148 CNV Loss 21882294
dgv4474n71 CNV Loss 21882294
dgv4475n71 CNV Loss 21882294
nsv876157 CNV Loss 21882294
nsv821937 CNV Gain 20364138
nsv876160 CNV Loss 21882294

Relevant External Links for ANKMY1 Gene

HapMap Linkage Disequilibrium report
ANKMY1

Disorders for ANKMY1 Gene

Relevant External Links for ANKMY1

Genetic Association Database (GAD)
ANKMY1
Human Genome Epidemiology (HuGE) Navigator
ANKMY1
genes like me logo Genes that share disorders with ANKMY1: view

No data available for UniProtKB/Swiss-Prot for ANKMY1 Gene

Publications for ANKMY1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 49
  4. New gene functions in megakaryopoiesis and platelet formation. (PMID: 22139419) Gieger C. … Soranzo N. (Nature 2011) 3 49
  5. Genetic analysis of Alzheimer's disease in the Uppsala Longitudinal Study of Adult Men. (PMID: 19141999) Giedraitis V. … Glaser A. (Dement Geriatr Cogn Disord 2009) 49

Products for ANKMY1 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate ANKMY1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ANKMY1
    • Block miRNA regulation of ANKMY1 using miScript Target Protectors

    Sources for ANKMY1 Gene

    Back to Top

    Content