Aliases for ANKFN1 Gene
External Ids for ANKFN1 Gene
- HGNC: 26766
- Entrez Gene: 162282
- Ensembl: ENSG00000153930
- UniProtKB: Q8N957
Previous GeneCards Identifiers for ANKFN1 Gene
- GC17P051586
- GC17P054230
- GC17P049590
- GC17P056110
- GC17P055965
Summaries for ANKFN1 Gene
GeneCards Summary for ANKFN1 Gene
ANKFN1 (Ankyrin Repeat And Fibronectin Type III Domain Containing 1) is a Protein Coding gene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKFN1 Gene
Genomics for ANKFN1 Gene
Regulatory Elements for ANKFN1 Gene
Enhancers for ANKFN1 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH17G056129 | 1.2 | VISTA | 11.7 | +247.9 | 247911 | 1.7 | ANKFN1 GC17M056076 GC17P056185 | |
| GH17G056171 | 0.8 | Ensembl ENCODE | 11.7 | +292.1 | 292146 | 6.3 | ZNF263 CTCF STAT1 SMARCA4 RAD21 EGR2 | ANKFN1 GC17P056185 GC17M056076 |
| GH17G056440 | 0.7 | ENCODE | 12 | +558.4 | 558371 | 0.8 | TBP STAT1 PKNOX1 JUN CEBPB KLF4 EP300 RFX5 GATA3 JUND | ANKFN1 GC17M056424 GC17P056429 |
| GH17G056320 | 0.7 | ENCODE dbSUPER | 10.8 | +438.4 | 438384 | 1.2 | MNT GABPA | ANKFN1 GC17M056335 GC17P056274 |
| GH17G056276 | 0.4 | dbSUPER | 10.3 | +396.1 | 396089 | 3.4 | NFE2 | ANKFN1 GC17P056274 GC17M056335 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around ANKFN1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for ANKFN1 Gene
- Chromosome:
- 17
- Start:
- 55,882,301 bp from pter
- End:
- 56,511,659 bp from pter
- Size:
- 629,359 bases
- Orientation:
- Plus strand
Genomic View for ANKFN1 Gene
Genes around ANKFN1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 17q22 by Ensembl
- 17q22 by Entrez Gene
- 17q22 by HGNC
ANKFN1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for ANKFN1 Gene
Proteins for ANKFN1 Gene
-
Protein details for ANKFN1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q8N957-ANKF1_HUMAN
- Recommended name:
- Ankyrin repeat and fibronectin type-III domain-containing protein 1
- Protein Accession:
- Q8N957
Protein attributes for ANKFN1 Gene
- Size:
- 763 amino acids
- Molecular mass:
- 87604 Da
- Quaternary structure:
- No Data Available
Protein Expression for ANKFN1 Gene
Post-translational modifications for ANKFN1 Gene
Other Protein References for ANKFN1 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for ANKFN1
- Invitrogen Antibodies for ANKFN1
- Search GeneTex for Antibodies for ANKFN1
Protein Products
-
OriGene Purified Proteins for ANKFN1
- Search Origene for MassSpec and Protein Over-expression Lysates for ANKFN1
- Origene Custom Protein Services for ANKFN1
- Search GeneTex for Proteins for ANKFN1
Assay Products
No data available for DME Specific Peptides for ANKFN1 Gene
Domains & Families for ANKFN1 Gene
Gene Families for ANKFN1 Gene
Protein Domains for ANKFN1 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for ANKFN1 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
No data available for UniProtKB/Swiss-Prot for ANKFN1 Gene
Function for ANKFN1 Gene
Phenotypes for ANKFN1 Gene
- MGI mutant phenotypes for ANKFN1:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for ANKFN1:
Animal Model Products
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-
-
ViGene Biosciences lentiviral particle packaged cDNA for ANKFN1 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for ANKFN1 gene
- Search ViGene Biosciences for ANKFN1
CRISPR Products
-
OriGene CRISPR knockouts for ANKFN1
-
Santa Cruz Biotechnology (SCBT) CRISPR for ANKFN1
- GenScript: Design CRISPR guide RNA sequences for ANKFN1
miRNA Products
- Search ViGene Biosciences for ANKFN1
Inhibitory RNA Products
- Origene RNAi, shRNA, and siRNA products in human, mouse, rat for ANKFN1
- Browse OriGene Inhibitory RNA Products For ANKFN1
-
ViGene Biosciences ready-to-package AAV shRNAs for ANKFN1 gene
Clone Products
-
OriGene ORF clones in human for ANKFN1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- VectorBuilder custom plasmid, inducible vectors for ANKFN1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ANKFN1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for ANKFN1
-
ViGene Biosciences adenoviral particle packaged cDNA for ANKFN1 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for ANKFN1 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for ANKFN1 gene
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKFN1 Gene
Localization for ANKFN1 Gene
| Compartment | Confidence |
|---|---|
| nucleus | 3 |
| cytosol | 2 |
| mitochondrion | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ANKFN1 Gene
Drugs & Compounds for ANKFN1 Gene
| Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
|---|---|---|---|---|---|---|
| Hydrochlorothiazide | Approved, Vet_approved | Pharma | Inhibition, Inhibitor | 413 |
Transcripts for ANKFN1 Gene
mRNA/cDNA for ANKFN1 Gene
- (16) REFSEQ mRNAs :
- (3) Additional mRNA sequences :
- (26) Selected AceView cDNA sequences:
- (9) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for ANKFN1 Gene
CRISPR Products
-
OriGene CRISPR knockouts for ANKFN1
-
Santa Cruz Biotechnology (SCBT) CRISPR for ANKFN1
- GenScript: Design CRISPR guide RNA sequences for ANKFN1
miRNA Products
- Search ViGene Biosciences for ANKFN1
Inhibitory RNA Products
- Origene RNAi, shRNA, and siRNA products in human, mouse, rat for ANKFN1
- Browse OriGene Inhibitory RNA Products For ANKFN1
-
ViGene Biosciences ready-to-package AAV shRNAs for ANKFN1 gene
Clone Products
-
OriGene ORF clones in human for ANKFN1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- VectorBuilder custom plasmid, inducible vectors for ANKFN1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ANKFN1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for ANKFN1 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
mRNA differential expression in normal tissues according to GTEx for ANKFN1 Gene
This gene is overexpressed in Cervix - Endocervix (x5.0) and Skin - Sun Exposed (Lower leg) (x4.4).
This gene is overexpressed in Heart (69.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ANKFN1 Gene
NURSA nuclear receptor signaling pathways regulating expression of ANKFN1 Gene:
ANKFN1SOURCE GeneReport for Unigene cluster for ANKFN1 Gene:
Hs.673040Primer Products
-
OriGene qPCR primer pairs for ANKFN1
No data available for mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKFN1 Gene
Orthologs for ANKFN1 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | ANKFN1 35 34 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | ANKFN1 34 35 |
|
||
| cow (Bos Taurus) |
Mammalia | ANKFN1 34 35 |
|
||
| mouse (Mus musculus) |
Mammalia | Ankfn1 34 16 35 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | ANKFN1 35 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | ANKFN1 35 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | ANKFN1 34 35 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | ANKFN1 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | LOC100490095 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | LOC557615 34 |
|
||
| ANKFN1 (1 of 3) 35 |
|
OneToMany | |||
| AL935268.1 35 |
|
OneToMany | |||
| ANKFN1 (3 of 3) 35 |
|
OneToMany | |||
| African malaria mosquito (Anopheles gambiae) |
Insecta | AgaP_AGAP001726 34 |
|
||
| fruit fly (Drosophila melanogaster) |
Insecta | CG6954 34 35 |
|
||
| worm (Caenorhabditis elegans) |
Secernentea | R07E4.1 35 |
|
OneToOne |
- Species where no ortholog for ANKFN1 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for ANKFN1 Gene
No data available for Paralogs for ANKFN1 Gene
Variants for ANKFN1 Gene
| SNP ID | Clin | Chr 17 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000001995 | -- | 56,481,510(+) | CACAC(A/G)CGCAC | intron-variant | |
| rs1000012961 | -- | 56,397,892(+) | TAGGG(A/G)ATAAG | intron-variant | |
| rs1000013511 | -- | 56,468,959(+) | ATACA(C/T)TAATC | intron-variant | |
| rs1000033684 | -- | 56,383,133(+) | TCTCT(C/G)AGACC | intron-variant | |
| rs1000039632 | -- | 56,417,615(+) | CTGCC(G/T)TTTTT | intron-variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2406695 | CNV | deletion | 18987734 |
| esv2716060 | CNV | deletion | 23290073 |
| esv2716061 | CNV | deletion | 23290073 |
| esv2716063 | CNV | deletion | 23290073 |
| esv2716064 | CNV | deletion | 23290073 |
| esv2716065 | CNV | deletion | 23290073 |
| esv3377290 | CNV | insertion | 20981092 |
| esv3554576 | CNV | deletion | 23714750 |
| esv3582828 | CNV | loss | 25503493 |
| esv3640848 | CNV | loss | 21293372 |
| nsv1152564 | CNV | duplication | 26484159 |
| nsv2100 | CNV | deletion | 18451855 |
| nsv2102 | CNV | insertion | 18451855 |
| nsv2103 | CNV | insertion | 18451855 |
| nsv575691 | CNV | gain | 21841781 |
| nsv575714 | CNV | gain | 21841781 |
| nsv833493 | CNV | loss | 17160897 |
| nsv833494 | CNV | gain | 17160897 |
| nsv960507 | CNV | duplication | 23825009 |
Residual Variation Intolerance Score:
31.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
7.02;
80.16% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for ANKFN1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- ANKFN1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ANKFN1 Gene
Disorders for ANKFN1 Gene
Relevant External Links for ANKFN1
No disorders were found for ANKFN1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKFN1 Gene
Publications for ANKFN1 Gene
- A genome-wide association study of DSM-IV cannabis dependence. (PMID: 21668797) Agrawal A. … Bierut L.J. (Addict Biol 2011) 3 46 64
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
- Identification of ten loci associated with height highlights new biological pathways in human growth. (PMID: 18391950) Lettre G. … Hirschhorn J.N. (Nat. Genet. 2008) 3 46 64
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
- Human gingiva transcriptome during wound healing. (PMID: 28005267) Wang Y. … Tatakis D.N. (J. Clin. Periodontol. 2017) 3 64
Products for ANKFN1 Gene
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- OriGene qPCR primer pairs for ANKFN1
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- Novus Biologicals Antibodies for ANKFN1
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- Invitrogen Antibodies for ANKFN1
- ViGene Biosciences adenoviral particle packaged cDNA for ANKFN1 gene
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- Search ViGene Biosciences for ANKFN1
- Horizon Cell Lines for ANKFN1
- Cyagen custom Knockout/knockin (KOKI) mouse models for ANKFN1
- VectorBuilder custom plasmid, inducible vectors for ANKFN1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ANKFN1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for ANKFN1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
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- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
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- (136) ViGene Biosciences
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- (141) ENCODE
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- (146) Cyagen
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- (148) SNPedia
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- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer