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Aliases & Descriptions for ANK3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ANK-3 3 ANKYRIN-G 2 Ankyrin-G 3 FLJ45464 2
Descriptions ankyrin 3 2 ankyrin 3, node of Ranvier (ankyrin G) 2 ankyrin G119 2 ankyrin-3, node of Ranvier 2
Search outside databases for aliases for ANK3 genePrevious GC identifers: GC10M060584 GC10M060813 GC10M061680 GC10M061132
Summaries for ANK3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ANK3 : Ankyrins are a family of proteins that are believed to link the integral membrane proteins to theunderlying spectrin-actin cytoskeleton and play key roles in activities such as cell motility,activation, proliferation, contact, and the maintenance of specialized membrane domains. Multipleisoforms of ankyrin with different affinities for various target proteins are expressed in atissue-specific, developmentally regulated manner. Most ankyrins are typically composed of threestructural domains: an amino-terminal domain containing multiple ankyrin repeats; a central regionwith a highly conserved spectrin binding domain; and a carboxy-terminal regulatory domain which isthe least conserved and subject to variation. Ankyrin 3 is an immunologically distinct geneproduct from ankyrins 1 and 2, and was originally found at the axonal initial segment and nodes ofRanvier of neurons in the central and peripheral nervous systems. Alternatively spliced variantsmay be expressed in other tissues. Although multiple transcript variants encoding severaldifferent isoforms have been found for this gene, the full-length nature of only two have beencharacterized. [provided by RefSeq] UniProtKB/Swiss-Prot: ANK3_HUMAN, Q12955 Function : Membrane-cytoskeleton linker. The neural-specific isoforms may participate in themaintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier andaxonal initial segments
Genomic Location for ANK3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
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UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ANK3 gene Entrez Gene cytogenetic band: 10q21 Ensembl cytogenetic band: 10q21.2 HGNC cytogenetic band: 10q21 ANK3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10M061458:
(about GC identifiers )
Start:
61,458,165 bp from pter
End:
61,819,494 bp from pter
Size:
361,330 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000010.9 NT_008583.16 Proteins for ANK3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ANK3_HUMAN, Q12955 (See
protein sequence )Recommended Name: Ankyrin-3 Size : 4372 amino acids; 479853 Da
Subunit : Neural-specific isoforms may be a constituent of a neurofascin/NRCAM/ankyrin G complex.Interacts with RHBG
Subcellular location : Cytoplasm, cytoskeleton
Secondary accessions : Q5VXD5Alternative splicing : 2 isoforms : Q12955-1 Q12955-2 (A number of isoforms are produced)
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001140.2 NP_066267.2 ENSEMBL proteins: ENSP00000378715 ENSP00000378713 ENSP00000362933 ENSP00000280772 ENSP00000347436 ENSP00000362921 ENSP00000362923 ENSP00000362926 ENSP00000378707 ENSP00000378711 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ANK3: Assays for ANK3:
Protein
Domains/ Families for ANK3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q12955 ProtoNet protein and cluster: Q12955
3 Blocks protein families : IPB000488 Death domain IPB000906 ZU5 domain IPB002110 Ankyrin repeat signature UniProtKB/Swiss-Prot: ANK3_HUMAN, Q12955 Similarity : Contains 23 ANK repeatsSimilarity : Contains 1 death domainSimilarity : Contains 1 ZU5 domain
Gene Function for ANK3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_020987 Applied Biosystems Silencer ® siRNAs for ANK3 Sigma-Aldrich siRNA and siRNA Panels for ANK3 Sigma-Aldrich shRNA Panels and shRNA for ANK3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001149                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001149                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001149  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_020987 UniProtKB/Swiss-Prot: ANK3_HUMAN, Q12955 Function : Membrane-cytoskeleton linker. The neural-specific isoforms may participate in themaintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier andaxonal initial segments
Genatlas biochemistry entry for ANK3 :ankyrin 3,non erythrocytic,intermediate filament associated protein (IFAP,type III),expressed inthe axonal initial segment and Ranvier nodes in the central and peripheral nervous system
3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Ank3) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for ANK3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for ANK3 5/16 Interacting proteins for ANK3 (ENSP00000280772 3 ) via UniProtKB, MINT, and/or STRING (see all 16
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for ANK3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ANK3 2 Novoseek chemical compound relationships for ANK3 gene
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Transcripts for ANK3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_020987 Sigma-Aldrich siRNA and siRNA Panels for ANK3 Sigma-Aldrich shRNA Panels and shRNA for ANK3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001149 NM_020987
REFSEQ mRNAs for ANK3 gene (2 alternative transcripts): NM_001149.2 NM_020987.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001149 NM_020987
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001149                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001149                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001149  
Additional cDNA sequence: AB209308.1 AK092361.1 AK092527.1 AK124230.1 AK126851.1 AK128763.1 AK128784.1 AK292927.1 AK295661.1 AL136710.1 BX537917.1 BX648574.1 EF139850.1 U13616.1
24/32 DOTS entries (see all 32
): DT.118237 DT.91946173 DT.92474267 DT.95308106 DT.95201870 DT.100679148 DT.121283958 DT.40302436 DT.95190384 DT.121284083 DT.100740021 DT.91864328 DT.70100610 DT.86850267 DT.97823089 DT.97862772 DT.100788278 DT.40207447 DT.97782497 DT.449043 DT.95157943 DT.100814663 DT.121283897 DT.121284018
24/285 AceView cDNA sequences (see all 285
):CB853599 BX486657 BF436099 AA677185 AA866119 AA995085 AI084306 AA460992 AI131275 H87682 BX108319 AI050977 AI339255 AI740514 AA838714 AA788785 BE328825 BM689667 W39432 CD676253 BM718793 BQ022190 Z38220 CF529946
highest scoring ESTs for ANK3 :U13616 BX537917 BX648574 AA001682 AA021643 AA027295 AA027296 AA037355 AA318318 AA350542
Unigene Cluster for ANK3: Ankyrin 3, node of Ranvier (ankyrin G) Hs.499725 [show with all ESTs ] Unigene Representative Sequence: NM_020987 GeneLoc Exon Structure 5/13 Alternative Splicing Database (ASD) splice patterns (SP) for ANK3 (see all 13
) ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16 ^ 17 ^ 18a · 18b ^ 19 ^ 20 ^ 21 ^ 22a · 22b ^ 23 ^ SP1 :                                   -   -   -   -   -     -       SP2 :                                     -   -   -   -           SP3 :                                         -   -           SP4 :                                                     SP5 :                                                    
ExUns: 24a · 24b ^ 25 ^ 26 ^ 27a · 27b ^ 28 ^ 29 ^ 30 ^ 31a · 31b ^ 32 ^ 33 ^ 34a · 34b ^ 35 ^ 36a · 36b ^ 37 ^ 38a · 38b · 38c ^ 39 ^ 40a · 40b · 40c ^ SP1 :     -                     -                             SP2 :     -                     -     -           -               SP3 :     -                                                 SP4 :                             -           -               SP5 :                                                    
ExUns: 41 ^ 42a · 42b SP1 :       SP2 :       SP3 :       SP4 :       SP5 :      
About this scheme ECgene alternative splicing isoforms for ANK3 10 Ensembl transcripts including schematic representations : ENST00000395304
ENST00000395302
ENST00000373827
ENST00000280772
ENST00000355288
ENST00000373815
ENST00000373817
ENST00000373820
ENST00000395293
ENST00000395299
Expression for ANK3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ANK3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ANK3 1 / 2 / 3
10 probe-sets matching ANK3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TGTATCACCTSOURCE GeneReport for Unigene cluster: Hs.499725 Expression variation in blood from EXPOLDB for ANK3
UniProtKB/Swiss-Prot: ANK3_HUMAN, Q12955 Tissue specificity : Expressed in brain and other tissues. Isoform 1 is neural-specific
Orthologs for ANK3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ANK3 gene from 5/11 species (see all 11
)
About this table Species with no ortholog for ANK3 ENSEMBL Gene Tree for ANK3 Paralogs for ANK3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ANK3 gene ANK1 2 ANK2 2
SNPs/Variants for ANK3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ANK3 (up to first 250kb)
Disorders & Mutations for ANK3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 600465 2 Novoseek disease relationships for ANK3 gene
About this table Human Genome Epidemiology Navigator: ANK3 (5 documents)
Medical News for ANK3 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ANK3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/64 PubMed articles for ANK3 gene (see all 64
): The ammonium transporter RhBG: requirement of a tyrosine-based signal and ankyrin-G for basolateral targeting and membrane anchorage in polarized kidney epithelial cells. (PubMed id 15611082) 3, 4 Lopez C.... Colin Y. (2005) Chromosomal localization of the ankyrinG gene (ANK3/Ank3) to human 10q21 and mouse 10. (PubMed id 7665168) 2, 3 Kapfhamer D....Burmeister M. (1995) AnkyrinG. A new ankyrin gene with neural-specific isoforms localized at the axonal initial segment and node of Ranvier. (PubMed id 7836469) 3, 4 Kordeli E.... Bennett V. (1995) Painful neuromas: a potential role for a structural transmembrane protein, ankyrin G. (PubMed id 12507143) 1, 3 Kretschmer T....Kline D.G. (2002) The smaller isoforms of ankyrin 3 bind to the p85 subunit of phosphatidylinositol 3'-kinase and enhance platelet-derived growth factor receptor down-regulation. (PubMed id 16377635) 1, 3 Ignatiuk A....Anderson D.H. (2006) Lateral membrane biogenesis in human bronchial epithelial cells requires 190-kDa ankyrin-G. (PubMed id 14757759) 1, 3 Kizhatil K. and Bennett V. (2004) Ankyrin-G regulates inactivation gating of the neuronal sodium channel, Nav1.6. (PubMed id 16775201) 1, 3 Shirahata E....Hayasaka K. (2006) Ankyrin-G and beta2-spectrin collaborate in biogenesis of lateral membrane of human bronchial epithelial cells. (PubMed id 17074766) 1, 3 Kizhatil K....Bennett V. (2007) Ankyrin G and voltage gated sodium channels colocalize in human neuroma--key proteins of membrane remodeling after axonal injury. (PubMed id 11950515) 1, 3 Kretschmer T....Kline D.G. (2002) Phosphorylation and ankyrin-G binding of the C-terminal domain regulate targeting and function of the ammonium transporter RhBG. (PubMed id 18635543) 1, 3 Sohet F....Lopez C. (2008)
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Genome Databases showing ANK3
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ANK3
(According to HUGE )
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Specialized Databases showing ANK3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
Wikipedia http://en.wikipedia.org/wiki/Ankyrin
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-- Services for ANK3 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for ANK3:
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009