ANGPTL6 Gene
protein-coding GIFtS: 53
GCID: GC19M010203
|
|
angiopoietin-like 6
| |
Aliases
for ANGPTL6 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Angiopoietin-Like 61 2 | | Angiopoietin-Related Growth Factor2 3 | | AGF1 2 3 5 | | Angiopoietin-Related Protein 52 3 | | ARP51 2 3 | | Angiopoietin-Related Protein 62 | | Angiopoietin-Like Protein 62 3 | | |
Export aliases for ANGPTL6 gene to outside databasesPrevious GC identifers: GC19M010048 GC19M010064 GC19M009783 |
Summaries
for ANGPTL6 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
UniProtKB/Swiss-Prot: ANGL6_HUMAN, Q8NI99Function: May play a role in the wound healing process. May promote epidermal proliferation, remodeling andregeneration. May promote the chemotactic activity of endothelial cells and induce neovascularization. May counteracthigh-fat diet-induced obesity and related insulin resistance through increased energy expenditure
|
Genomic Views
for ANGPTL6 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000019.9 NC_018930.1 NT_011295.11
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the ANGPTL6 gene promoter:
Pax-6 GATA-2 Max AREB6 FOXO1a LyF-1 Zic3 FOXO1 c-Myc
Other transcription factors
Search SABiosciences Chromatin IP Primers for ANGPTL6
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ANGPTL6 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 19p13.2 Ensembl cytogenetic band: 19p13.2 HGNC cytogenetic band: 19p13.2ANGPTL6 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19M010203: view genomic region
(about GC identifiers)
Start:
|
10,203,013 bp from pter |
End:
|
10,213,472 bp from pter |
Size:
|
10,460 bases |
Orientation:
|
minus strand |
|
Proteins
for ANGPTL6 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: ANGL6_HUMAN, Q8NI99 (See
protein sequence)Recommended Name: Angiopoietin-related protein 6 precursor Size: 470 amino acids; 51694 Da
Subcellular location: Secreted (Probable)
Secondary accessions: A5PKV7 Q9BZZ0Explore the universe of human proteins at neXtProt for ANGPTL6: NX_Q8NI99
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q8NI99
ANGPTL6 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_114123.2
ENSEMBL proteins: ENSP00000465597 ENSP00000467930 ENSP00000253109
Human Recombinant Protein Products for ANGPTL6:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005615 | extracellular space |
IEA | -- | | GO:0030141 | secretory granule |
IEA | -- |
ANGPTL6 for ontologies About GeneDecksing
ANGPTL6 Antibody Products:
Assay Products for ANGPTL6: |
Protein
Domains /
Families
for ANGPTL6 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
ANGPTL6 for domains About GeneDecksing
4 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q8NI99ProtoNet protein and cluster: Q8NI99 1 Blocks protein family: IPB002181 Fibrinogen
UniProtKB/Swiss-Prot: ANGL6_HUMAN, Q8NI99Similarity: Contains 1 fibrinogen C-terminal domain |
Function
for ANGPTL6 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Molecular Function:
UniProtKB/Swiss-Prot Summary: ANGL6_HUMAN, Q8NI99Function: May play a role in the wound healing process. May promote epidermal proliferation, remodeling andregeneration. May promote the chemotactic activity of endothelial cells and induce neovascularization. May counteracthigh-fat diet-induced obesity and related insulin resistance through increased energy expenditure Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005102 | receptor binding |
IEA | -- |
ANGPTL6 for ontologies About GeneDecksing
Phenotypes:
2 GenomeRNAi human phenotypes for ANGPTL6:
6 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Angptl6):
ANGPTL6 for phenotypes About GeneDecksing
Animal Models:
Mouse knock-out Angptl6tm1Yo for ANGPTL6
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ANGPTL6 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ANGPTL6
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: ANGPTL6 (NM_031917) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ANGPTL6 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ANGPTL6 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ANGPTL6 |
|
Pathways & Interactions
for ANGPTL6 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways - 5/12 super-pathways (see all 12) About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Apoptotic Pathways in Synovial Fibroblasts | | | 2 | GPCR Pathway | | | 3 | Rho Family GTPases | | | 4 | TGF-Beta Pathway | | | 5 | Nanog in Mammalian ESC Pluripotency | |
5/54 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for ANGPTL6 (see all 54)
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ANGPTL6
Gene Ontology (GO): 3 biological process terms (GO ID links to tree view): About this table
ANGPTL6 for ontologies About GeneDecksing
|
Drugs & Compounds
for ANGPTL6 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
ANGPTL6 for compounds About GeneDecksing
 Browse Tocris compounds for ANGPTL6
2 Novoseek chemical compound relationships for ANGPTL6 gene About this table
Search CenterWatch for drugs/clinical trials and news about ANGPTL6 / ANGL6
|
Transcripts
for ANGPTL6 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for ANGPTL6 gene: NM_031917.2 Unigene Cluster for ANGPTL6: Angiopoietin-like 6 Hs.712850 [show with all ESTs]Unigene Representative Sequence: AF2303304 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000589181 ENST00000592641 ENST00000253109(uc002mmx.2 uc002mmy.1)
ENST00000586910
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ANGPTL6 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ANGPTL6
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: ANGPTL6 (NM_031917) | | | DNA2.0 Custom Codon Optimized Gene
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Additional cDNA sequence: AB054064.1 AF230330.1 AY358276.1 BC142632.1 2 DOTS entries: DT.70102779 DT.99955688 24/31 AceView cDNA sequences (see all 31): AB054064 NM_031917 CR621970 CR591845 AY358276 CR617920 AF230330 BX364683 AI394424 BX364684 AL543746 BX402446 AI332587 AA919135 BX381710 AI806111 BX355859 AA313128 BX381709 BX406820 AW177634 D45688 BF848700 AL545641
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for ANGPTL6 About this scheme
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 |
|---|
|
| SP1: | | | - | | | | | | | | |
| SP2: | | | | | | | | | | | |
| SP3: | | | | | | | | | | |
ECgene alternative splicing isoforms for ANGPTL6
|
Expression
for ANGPTL6 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| ANGPTL6 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CTCATTCGGC
About this image
See ANGPTL6 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ANGPTL6
SOURCE GeneReport for Unigene cluster: Hs.712850
SABiosciences Custom PCR Arrays for ANGPTL6
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ANGPTL6
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat ANGPTL6 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ANGPTL6 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ANGPTL6 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ANGPTL6 |
Orthologs
for ANGPTL6 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for ANGPTL6 gene from 4/13 species (see all 13) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
mouse
(Mus musculus) |
Mammalia |
Angptl61 , 5 |
angiopoietin-like 61, 5 |
78.41(n)1
76.37(a)1 |
|
9 (7.66 cM)5
707261 NM_145154.21 NP_660136.11
208738095 |
lizard
(Anolis carolinensis) |
Reptilia |
ANGPTL66 |
-- |
45(a) |
1 ↔ 1 |
GL343414.1(511652-536409) |
African clawed frog
(Xenopus laevis) |
Amphibia |
Xl.125632 |
Xenopus laevis transcribed sequence with moderate similarity more |
75.13(n) |
|
BJ087915.1 |
zebrafish
(Danio rerio) |
Actinopterygii |
Dr.240202 |
Danio rerio cDNA clone IMAGE2640087, partial cds |
73.36(n) |
|
BC055229.1 |
ENSEMBL Gene Tree for ANGPTL6 (if available)
TreeFam Gene Tree for ANGPTL6 (if available) |
Paralogs
for ANGPTL6 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for ANGPTL6 gene
- FGL22 ANGPT42 FGA2 FGG2 ANGPTL22 ANGPTL42 ANGPT12 ANGPTL32
- ANGPTL12 ANGPTL72 FGB2 ANGPT22 FGL12
10 SIMAP similar genes for ANGPTL6 using alignment to 2 protein entries: ANGL6_HUMAN (see all proteins):ANGPTL2 ANGPTL1 ANGPTL7 ANGPT1 FGL1 FIBCD1
FCN3 FCN2 FGB FCN1
ANGPTL6 for paralogs About GeneDecksing
|
Genomic Variants
for ANGPTL6 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 19 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for ANGPTL6 (10203013 - 10213472 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 2 variations for ANGPTL6
2 CNVs: 5085 67464 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ANGPTL6 |
|
Disorders
/ Diseases
for ANGPTL6 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Novoseek,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
ANGPTL6 for disorders About GeneDecksing
OMIM gene information: 609336
OMIM disorders: --
12  diseases for ANGPTL6: About MalaCardsdental fluorosis dental caries enterobiasis gnathomiasis
angiostrongyliasis insulin resistance diabetes mellitus ischemia
obesity breast cancer adenocarcinoma pancreatitis
3 diseases from the University of Copenhagen DISEASES database for ANGPTL6:Enterobiasis Dental caries Gnathomiasis 1 Novoseek disease relationship for ANGPTL6 gene About this table
| Disease |
-log (P-Val) |
Hits |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| inflammation |
6.77 |
2 |
19057519 (1), 19303977 (1) |
Human Genome Epidemiology (HuGE) Navigator: ANGPTL6 (1 document)
Export disorders for ANGPTL6 gene to outside databases
|
Publications
for ANGPTL6 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for ANGPTL6 gene, integrated from 9 sources (see all 18):
(articles sorted by number of sources associating them with ANGPTL6) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Angiopoietin-related growth factor (AGF) promotes epidermal proliferation, remodeling, and regeneration. (PubMed id 12871997)1, 2, 3 Oike Y.... Suda T. (2003)
- Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952)1, 2 Liu T.... Smith R.D. (2005)
- The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2 Clark H.F.... Gray A.M. (2003)
- Angiopoietin-related growth factor (AGF) supports adhesion, spreading, and migration of keratinocytes, fibroblasts, and endothelial cells through interaction with RGD-binding integrins. (PubMed id 16806062)1, 9 Zhang Y....Gong Y. (2006)
- Serum levels of angiopoietin-related growth factor ar e increased in metabolic syndrome. (PubMed id 20673930)1 Namkung J....Yeh B.I. (2011)
- Evidence of a role of ANGPTL6 in resting metabolic ra te and its potential application in treatment of obesity. (PubMed id 21460784)1 Mirzaei K....Shahbazi S. (2011)
- Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry. (PubMed id 19159218)2 Chen R.... Zou H. (2009)
- Association between angiopoietin-like 6 (ANGPTL6) gen e polymorphisms and metabolic syndrome-related phenotypes in the French MONICA Study. (PubMed id 19447061)1 Legry V....Meirhaeghe A. (2009)
- A genome-wide association study identifies protein quantitative trait loci (pQTLs). (PubMed id 18464913)1 Melzer D....Ferrucci L. (2008)
- Angiopoietin-related growth factor (AGF) promotes angiogenesis. (PubMed id 14764539)1 Oike Y....Suda T. (2004)
|
External Searches for ANGPTL6 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing ANGPTL6 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ANGPTL6 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ANGPTL6 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for ANGPTL6 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for ANGPTL6 gene:
Search GeneIP for patents involving ANGPTL6
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ANGPTL6 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
 | |
 | |
 |
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ANGPTL6 |
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