Free for academic non-profit institutions. Other users need a Commercial license

AMZ2P1 Gene(Pseudogene)

Archaelysin Family Metallopeptidase 2 Pseudogene 1

GCID:
GC17M064966
GIFtS:
22
Genes Participants
UDN Logo

Aliases for AMZ2P1 Gene

Aliases for AMZ2P1 Gene

  • Archaelysin Family Metallopeptidase 2 Pseudogene 1 2 3 5

External Ids for AMZ2P1 Gene

Previous GeneCards Identifiers for AMZ2P1 Gene

  • GC17M062963
  • GC17M058355

Summaries for AMZ2P1 Gene

GeneCards Summary for AMZ2P1 Gene

AMZ2P1 (Archaelysin Family Metallopeptidase 2 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AMZ2P1 Gene

Genomics for AMZ2P1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for AMZ2P1 Gene

Enhancers for AMZ2P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G064983 1.9 FANTOM5 Ensembl ENCODE dbSUPER 42.9 -9.8 -9787 4.5 HDGF PKNOX1 FOXA2 ATF1 SIN3A YBX1 ZBTB7B GATA2 ZNF143 ZNF207 AMZ2P1 GNA13 DDX5 CEP95 RGS9 LRRC37A3 GC17P064985
GH17G064988 1.7 FANTOM5 Ensembl ENCODE dbSUPER 42.7 -13.4 -13423 2.0 HDGF SUZ12 ZIC2 FOSL1 ZNF121 MTA3 SCRT2 ZNF207 FOSL2 FOS AMZ2P1 GNA13 DDX5 CEP95 GC17P064985 ENSG00000266598
GH17G064973 1.4 ENCODE dbSUPER 42.5 +0.3 338 3.1 HNRNPUL1 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B AMZ2P1 GNA13 SLC16A6P1
GH17G065061 1.8 FANTOM5 Ensembl ENCODE dbSUPER 27 -88.0 -88027 3.7 HDGF FOXA2 ARID4B SIN3A DMAP1 ZBTB7B ZNF766 GATA2 ZNF207 FOS AMZ2P1 RGS9 GNA13 GC17M064881 GC17P065064
GH17G064995 1 FANTOM5 dbSUPER 37.9 -20.1 -20099 0.4 HDAC1 L3MBTL2 NR2F1 ZEB2 FOXA1 ZFHX2 EGR1 IKZF1 NR2C1 KDM1A AMZ2P1 GNA13 DDX5 CEP95 GC17P064985 ENSG00000266598
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AMZ2P1 on UCSC Golden Path with GeneCards custom track

Promoters for AMZ2P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000097052 -215 1201 HNRNPUL1 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B

Genomic Location for AMZ2P1 Gene

Chromosome:
17
Start:
64,966,550 bp from pter
End:
64,975,585 bp from pter
Size:
9,036 bases
Orientation:
Minus strand

Genomic View for AMZ2P1 Gene

Genes around AMZ2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AMZ2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AMZ2P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for AMZ2P1 Gene

Proteins for AMZ2P1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for AMZ2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AMZ2P1 Gene

Domains & Families for AMZ2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AMZ2P1 Gene

Function for AMZ2P1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for AMZ2P1 Gene

GenomeRNAi human phenotypes for AMZ2P1:
genes like me logo Genes that share phenotypes with AMZ2P1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AMZ2P1 Gene

Localization for AMZ2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AMZ2P1 Gene

Pathways & Interactions for AMZ2P1 Gene

SuperPathways for AMZ2P1 Gene

PathCards logo More details on SuperPathways for AMZ2P1
No Data Available

Interacting Proteins for AMZ2P1 Gene

Gene Ontology (GO) - Biological Process for AMZ2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AMZ2P1 Gene

Drugs & Compounds for AMZ2P1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for AMZ2P1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for AMZ2P1 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(109) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AMZ2P1 Gene

Archaelysin family metallopeptidase 2 pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for AMZ2P1 Gene

No ASD Table

Relevant External Links for AMZ2P1 Gene

GeneLoc Exon Structure for
AMZ2P1
ECgene alternative splicing isoforms for
AMZ2P1

Expression for AMZ2P1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AMZ2P1 Gene

mRNA expression in normal human tissues for AMZ2P1 Gene
mRNA expression by GTEx for AMZ2P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of AMZ2P1 Gene:

AMZ2P1

SOURCE GeneReport for Unigene cluster for AMZ2P1 Gene:

Hs.396447
genes like me logo Genes that share expression patterns with AMZ2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AMZ2P1 Gene

Orthologs for AMZ2P1 Gene

Evolution for AMZ2P1 Gene

ENSEMBL:
Gene Tree for AMZ2P1 (if available)
TreeFam:
Gene Tree for AMZ2P1 (if available)

No data available for Orthologs for AMZ2P1 Gene

Paralogs for AMZ2P1 Gene

No data available for Paralogs for AMZ2P1 Gene

Variants for AMZ2P1 Gene

Sequence variations from dbSNP and Humsavar for AMZ2P1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000354728 -- 64,971,303(+) CCACG(C/T)CTCCA intron-variant
rs1000501208 -- 64,967,041(+) AAATG(A/G)CTTAA nc-transcript-variant, upstream-variant-2KB
rs1000964855 -- 64,972,850(+) CAAGC(A/G)ATAGA nc-transcript-variant
rs1001102889 -- 64,973,210(+) AAAAC(C/T)GAACC intron-variant
rs1001501365 -- 64,968,454(+) CATTG(A/G)CTTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AMZ2P1 Gene

Variant ID Type Subtype PubMed ID
dgv3274n100 CNV gain 25217958
dgv45n68 CNV loss 17160897
nsv1066765 CNV gain 25217958
nsv1120054 OTHER inversion 24896259
nsv960522 CNV duplication 23825009

Relevant External Links for AMZ2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AMZ2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AMZ2P1 Gene

Disorders for AMZ2P1 Gene

Relevant External Links for AMZ2P1

Genetic Association Database (GAD)
AMZ2P1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AMZ2P1

No disorders were found for AMZ2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AMZ2P1 Gene

Publications for AMZ2P1 Gene

  1. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PMID: 22990118) Woods N.T. … Monteiro A.N. (Sci Signal 2012) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for AMZ2P1 Gene

Sources for AMZ2P1 Gene

Content
Loading form....