Free for academic non-profit institutions. Other users need a Commercial license

Aliases for AMZ1 Gene

Aliases for AMZ1 Gene

  • Archaelysin Family Metallopeptidase 1 2 3
  • Archeobacterial Metalloproteinase-Like Protein 1 3 4
  • Archaemetzincin-1 2 3
  • KIAA1950 4 6
  • Metalloproteinase-Like Protein 3
  • EC 3.4.-.- 4

External Ids for AMZ1 Gene

Previous GeneCards Identifiers for AMZ1 Gene

  • GC07P002493
  • GC07P002685

Summaries for AMZ1 Gene

GeneCards Summary for AMZ1 Gene

AMZ1 (Archaelysin Family Metallopeptidase 1) is a Protein Coding gene. GO annotations related to this gene include metallopeptidase activity. An important paralog of this gene is AMZ2.

UniProtKB/Swiss-Prot for AMZ1 Gene

  • Zinc metalloprotease. Exhibits aminopeptidase activity against neurogranin in vitro. Does not hydrolyze angiotensin-2.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AMZ1 Gene

Genomics for AMZ1 Gene

Regulatory Elements for AMZ1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for AMZ1 Gene

Start:
2,679,522 bp from pter
End:
2,775,500 bp from pter
Size:
95,979 bases
Orientation:
Plus strand

Genomic View for AMZ1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for AMZ1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AMZ1 Gene

Proteins for AMZ1 Gene

  • Protein details for AMZ1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q400G9-AMZ1_HUMAN
    Recommended name:
    Archaemetzincin-1
    Protein Accession:
    Q400G9
    Secondary Accessions:
    • B3KRS0
    • Q8TF51

    Protein attributes for AMZ1 Gene

    Size:
    498 amino acids
    Molecular mass:
    54924 Da
    Cofactor:
    Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Note=Binds 2 Zn(2+) ions per subunit. One is catalytic, whereas the other seems to have a structural role.;
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB85536.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for AMZ1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for AMZ1 Gene

Proteomics data for AMZ1 Gene at MOPED

Post-translational modifications for AMZ1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for AMZ1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for AMZ1 Gene

Domains for AMZ1 Gene

Protein Domains for AMZ1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q400G9

UniProtKB/Swiss-Prot:

AMZ1_HUMAN :
  • Q400G9
Family:
  • Belongs to the peptidase M54 family.
genes like me logo Genes that share domains with AMZ1: view

No data available for Gene Families for AMZ1 Gene

Function for AMZ1 Gene

Molecular function for AMZ1 Gene

UniProtKB/Swiss-Prot BiophysicochemicalProperties: pH dependence: Optimum pH is 8.0. {ECO:0000269 PubMed:15972818};
UniProtKB/Swiss-Prot EnzymeRegulation: Inhibited by the general metalloprotease inhibitors o-phenanthroline and batimastat. Also significantly inhibited by amastatin, which is an inhibitor of aminopeptidases. Not inhibited by 4-(2-aminoethyl)-benzenesulfonyl fluoride, E-64, and TIMPS (tissue inhibitors of metalloproteinases), which are inhibitors of serine, cysteine, and matrix metalloproteases, respectively.
UniProtKB/Swiss-Prot Function: Zinc metalloprotease. Exhibits aminopeptidase activity against neurogranin in vitro. Does not hydrolyze angiotensin-2.

Enzyme Numbers (IUBMB) for AMZ1 Gene

Gene Ontology (GO) - Molecular Function for AMZ1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008237 metallopeptidase activity IEA --
GO:0008270 zinc ion binding IEA --
genes like me logo Genes that share ontologies with AMZ1: view

Animal Model Products

CRISPR Products

miRNA for AMZ1 Gene

miRTarBase miRNAs that target AMZ1

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for AMZ1

In Situ Assay Products

Flow Cytometry Products

No data available for Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for AMZ1 Gene

Localization for AMZ1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for AMZ1 Gene COMPARTMENTS Subcellular localization image for AMZ1 gene
Compartment Confidence
cytosol 2
nucleus 2
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for AMZ1 Gene

Pathways for AMZ1 Gene

SuperPathways for AMZ1 Gene

No Data Available

Interacting Proteins for AMZ1 Gene

Gene Ontology (GO) - Biological Process for AMZ1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006508 proteolysis IEA --
genes like me logo Genes that share ontologies with AMZ1: view

No data available for Pathways by source for AMZ1 Gene

Transcripts for AMZ1 Gene

mRNA/cDNA for AMZ1 Gene

(4) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AMZ1 Gene

Archaelysin family metallopeptidase 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for AMZ1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for AMZ1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for AMZ1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9
SP1: - -
SP2: - -
SP3: -

Relevant External Links for AMZ1 Gene

GeneLoc Exon Structure for
AMZ1
ECgene alternative splicing isoforms for
AMZ1

Expression for AMZ1 Gene

mRNA expression in normal human tissues for AMZ1 Gene

mRNA differential expression in normal tissues according to GTEx for AMZ1 Gene

This gene is overexpressed in Brain - Amygdala (5.3), Brain - Nucleus accumbens (basal ganglia) (4.6), and Brain - Putamen (basal ganglia) (4.3).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for AMZ1 Gene

SOURCE GeneReport for Unigene cluster for AMZ1 Gene Hs.42221

mRNA Expression by UniProt/SwissProt for AMZ1 Gene

Q400G9-AMZ1_HUMAN
Tissue specificity: Predominantly expressed in heart and liver. Also expressed at lower level in kidney, pancreas and testis. Expressed in fetal tissues such as kidney, liver, lung and brain.
genes like me logo Genes that share expressions with AMZ1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for AMZ1 Gene

Orthologs for AMZ1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for AMZ1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia AMZ1 35
  • 98.8 (n)
  • 99 (a)
AMZ1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia AMZ1 35
  • 81.6 (n)
  • 77.8 (a)
AMZ1 36
  • 76 (a)
OneToOne
dog
(Canis familiaris)
Mammalia AMZ1 35
  • 81.99 (n)
  • 78.11 (a)
AMZ1 36
  • 77 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Amz1 35
  • 78.07 (n)
  • 74.04 (a)
Amz1 16
Amz1 36
  • 73 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia AMZ1 36
  • 67 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia AMZ1 36
  • 68 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Amz1 35
  • 77.33 (n)
  • 75.86 (a)
chicken
(Gallus gallus)
Aves AMZ1 35
  • 69.9 (n)
  • 66.67 (a)
AMZ1 36
  • 65 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia AMZ1 36
  • 64 (a)
OneToOne
Species with no ortholog for AMZ1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for AMZ1 Gene

ENSEMBL:
Gene Tree for AMZ1 (if available)
TreeFam:
Gene Tree for AMZ1 (if available)

Paralogs for AMZ1 Gene

Paralogs for AMZ1 Gene

Selected SIMAP similar genes for AMZ1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with AMZ1: view

Variants for AMZ1 Gene

Sequence variations from dbSNP and Humsavar for AMZ1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs376048 -- 2,679,565(-) TGGGC(A/G/T)CTCAA utr-variant-5-prime
rs390142 -- 2,679,772(-) GGAGC(A/C)GCAGC intron-variant
rs390778 -- 2,679,584(-) TGCAA(A/T)GTCCA utr-variant-5-prime
rs421249 -- 2,679,255(+) CGGGC(A/G)CCGGC upstream-variant-2KB
rs422614 -- 2,678,683(-) TTTGC(C/T)GTGTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for AMZ1 Gene

Variant ID Type Subtype PubMed ID
nsv471227 CNV Loss 18288195
dgv401n21 CNV Loss 19592680
dgv7121n71 CNV Loss 21882294
dgv7122n71 CNV Loss 21882294
nsv464257 CNV Loss 19166990
nsv464258 CNV Loss 19166990
nsv887312 CNV Loss 21882294
esv2670827 CNV Deletion 23128226

Relevant External Links for AMZ1 Gene

HapMap Linkage Disequilibrium report
AMZ1
Human Gene Mutation Database (HGMD)
AMZ1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for AMZ1 Gene

Disorders for AMZ1 Gene

Relevant External Links for AMZ1

Genetic Association Database (GAD)
AMZ1
genes like me logo Genes that share disorders with AMZ1: view

No data available for UniProtKB/Swiss-Prot for AMZ1 Gene

Publications for AMZ1 Gene

  1. Identification and characterization of human archaemetzincin-1 and - 2, two novel members of a family of metalloproteases widely distributed in Archaea. (PMID: 15972818) Diaz-Perales A. … Lopez-Otin C. (J. Biol. Chem. 2005) 2 3 4 23
  2. Prediction of the coding sequences of unidentified human genes. XXII. The complete sequences of 50 new cDNA clones which code for large proteins. (PMID: 11853319) Nagase T. … Ohara O. (DNA Res. 2001) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. (PMID: 23563607) Berndt S.I. … Ingelsson E. (Nat. Genet. 2013) 3
  5. Many sequence variants affecting diversity of adult human height. (PMID: 18391951) Gudbjartsson D.F. … Stefansson K. (Nat. Genet. 2008) 48

Products for AMZ1 Gene

Sources for AMZ1 Gene

Back to Top

Content