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Aliases for AMY1C Gene

Aliases for AMY1C Gene

  • Amylase, Alpha 1C (Salivary) 2 3 5
  • 1,4-Alpha-D-Glucan Glucanohydrolase 1 3 4
  • Salivary Alpha-Amylase 3 4
  • EC 3.2.1.1 4 58
  • AMY1 3 4
  • Amylase, Alpha 1C; Salivary 2
  • Amylase, Salivary, Alpha-1C 3
  • Salivary Amylase Alpha 1C 3
  • AMY1A AMY1B AMY1C 4
  • Alpha-Amylase 1 3
  • Glycogenase 3

External Ids for AMY1C Gene

Previous HGNC Symbols for AMY1C Gene

  • AMY1

Previous GeneCards Identifiers for AMY1C Gene

  • GC01U990009
  • GC01P104093
  • GC01P104292

Summaries for AMY1C Gene

Entrez Gene Summary for AMY1C Gene

  • Amylases are secreted proteins that hydrolyze 1,4-alpha-glucoside bonds in oligosaccharides and polysaccharides, and thus catalyze the first step in digestion of dietary starch and glycogen. The human genome has a cluster of several amylase genes that are expressed at high levels in either salivary gland or pancreas. This gene encodes an amylase isoenzyme produced by the salivary gland. [provided by RefSeq, Jul 2008]

GeneCards Summary for AMY1C Gene

AMY1C (Amylase, Alpha 1C (Salivary)) is a Protein Coding gene. Diseases associated with AMY1C include Avoidant Personality Disorder. Among its related pathways are Metabolism and Galactose metabolism. GO annotations related to this gene include cation binding and alpha-amylase activity. An important paralog of this gene is AMY1B.

Additional gene information for AMY1C Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AMY1C Gene

Genomics for AMY1C Gene

Regulatory Elements for AMY1C Gene


Genomic Location for AMY1C Gene

Chromosome:
1
Start:
103,749,656 bp from pter
End:
103,758,692 bp from pter
Size:
9,037 bases
Orientation:
Plus strand

Genomic View for AMY1C Gene

Genes around AMY1C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AMY1C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AMY1C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AMY1C Gene

Proteins for AMY1C Gene

  • Protein details for AMY1C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P04745-AMY1_HUMAN
    Recommended name:
    Alpha-amylase 1
    Protein Accession:
    P04745
    Secondary Accessions:
    • A6NJS5
    • A8K8H6
    • Q13763
    • Q5T083

    Protein attributes for AMY1C Gene

    Size:
    511 amino acids
    Molecular mass:
    57768 Da
    Cofactor:
    Name=Ca(2+); Xref=ChEBI:CHEBI:29108;
    Cofactor:
    Name=chloride; Xref=ChEBI:CHEBI:17996;
    Quaternary structure:
    • Monomer.
    • Monomer.
    • Monomer.

    Three dimensional structures from OCA and Proteopedia for AMY1C Gene

neXtProt entry for AMY1C Gene

Selected DME Specific Peptides for AMY1C Gene

P04745:
  • LPAGTYCDV
  • SILTFWDAR
  • RVTEFKYGAKLGTVIRKWNGEKM
  • YMNHLID
  • GVRIYVD
  • AHFSISNS
  • QEVIDLGGE
  • DNHDNQR
  • GEKMSYLKNWGEGWG
  • RPWWERYQP
  • IVFNNDDW
  • CEHRWRQ
  • GFCWAQY
  • FMLAHPYG
  • YCDVISG
  • SNQVAFGRG
  • GFIVFNN
  • PAVPYSGWDFNDGKC
  • FRNVVDG
  • LDKLHNLN
  • AEDPFIAIH
  • QVRDCRL

Post-translational modifications for AMY1C Gene

  • Glycosylation at Asn427 and Asn476
  • Modification sites at PhosphoSitePlus

Other Protein References for AMY1C Gene

Domains & Families for AMY1C Gene

Gene Families for AMY1C Gene

Human Protein Atlas (HPA):
  • Enzymes
  • Predicted secreted proteins

Suggested Antigen Peptide Sequences for AMY1C Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P04745

UniProtKB/Swiss-Prot:

AMY1_HUMAN :
  • Belongs to the glycosyl hydrolase 13 family.
Family:
  • Belongs to the glycosyl hydrolase 13 family.
genes like me logo Genes that share domains with AMY1C: view

Function for AMY1C Gene

Molecular function for AMY1C Gene

GENATLAS Biochemistry:
amylase,alpha-1C,salivary,see AMY@
UniProtKB/Swiss-Prot CatalyticActivity:
Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.

Enzyme Numbers (IUBMB) for AMY1C Gene

Gene Ontology (GO) - Molecular Function for AMY1C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004556 alpha-amylase activity TAS,IEA --
GO:0005515 protein binding IPI 16203048
GO:0016787 hydrolase activity IEA --
GO:0016798 hydrolase activity, acting on glycosyl bonds IEA --
GO:0043169 cation binding IEA --
genes like me logo Genes that share ontologies with AMY1C: view

Phenotypes for AMY1C Gene

genes like me logo Genes that share phenotypes with AMY1C: view

Animal Model Products

CRISPR Products

miRNA for AMY1C Gene

miRTarBase miRNAs that target AMY1C

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for AMY1C
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for AMY1C Gene

Localization for AMY1C Gene

Subcellular locations from UniProtKB/Swiss-Prot for AMY1C Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for AMY1C gene
Compartment Confidence
extracellular 5

Gene Ontology (GO) - Cellular Components for AMY1C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005615 extracellular space IDA 16502470
GO:0070062 extracellular exosome IDA 19199708
genes like me logo Genes that share ontologies with AMY1C: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for AMY1C Gene

Pathways & Interactions for AMY1C Gene

genes like me logo Genes that share pathways with AMY1C: view

Gene Ontology (GO) - Biological Process for AMY1C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005975 carbohydrate metabolic process TAS,IEA --
GO:0007586 digestion TAS 2423416
GO:0008152 metabolic process IEA --
genes like me logo Genes that share ontologies with AMY1C: view

No data available for SIGNOR curated interactions for AMY1C Gene

Drugs & Compounds for AMY1C Gene

No Compound Related Data Available

Transcripts for AMY1C Gene

mRNA/cDNA for AMY1C Gene

(4) REFSEQ mRNAs :
(12) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AMY1C Gene

Amylase, alpha 1C (salivary):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for AMY1C
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for AMY1C Gene

No ASD Table

Relevant External Links for AMY1C Gene

GeneLoc Exon Structure for
AMY1C
ECgene alternative splicing isoforms for
AMY1C

Expression for AMY1C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AMY1C Gene

mRNA differential expression in normal tissues according to GTEx for AMY1C Gene

This gene is overexpressed in Pancreas (x42.2).

Protein differential expression in normal tissues from HIPED for AMY1C Gene

This gene is overexpressed in Saliva (54.0) and Salivary gland (11.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for AMY1C Gene



Protein tissue co-expression partners for AMY1C Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of AMY1C Gene:

AMY1C

SOURCE GeneReport for Unigene cluster for AMY1C Gene:

Hs.655232

Evidence on tissue expression from TISSUES for AMY1C Gene

  • Saliva(4.7)
  • Pancreas(4.4)
  • Thyroid gland(4)
  • Adrenal gland(2.6)
  • Nervous system(2.3)
genes like me logo Genes that share expression patterns with AMY1C: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for AMY1C Gene

Orthologs for AMY1C Gene

This gene was present in the common ancestor of animals.

Orthologs for AMY1C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia AMY1A 33
  • 99.02 (n)
dog
(Canis familiaris)
Mammalia -- 34
  • 90 (a)
ManyToMany
-- 34
  • 90 (a)
ManyToMany
-- 34
  • 90 (a)
ManyToMany
-- 34
  • 90 (a)
ManyToMany
-- 34
  • 88 (a)
ManyToMany
-- 34
  • 88 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia AMY2B 34
  • 86 (a)
ManyToMany
-- 34
  • 85 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 86 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Amy1 34
  • 85 (a)
ManyToMany
Amy2a2 34
  • 84 (a)
ManyToMany
Amy2a3 34
  • 84 (a)
ManyToMany
Amy2a4 34
  • 84 (a)
ManyToMany
Amy2a5 34
  • 84 (a)
ManyToMany
Amy2a1 34
  • 81 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 84 (a)
OneToMany
chicken
(Gallus gallus)
Aves AMY2A 34
  • 83 (a)
ManyToMany
AMY1A 34
  • 79 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 80 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii amy2a 34
  • 74 (a)
ManyToMany
zgc:92137 34
  • 69 (a)
ManyToMany
zgc:66313 34
  • 68 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta Amy-d 34
  • 55 (a)
ManyToMany
Amy-p 34
  • 55 (a)
ManyToMany
Amyrel 34
  • 49 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea C50B6.7 34
  • 33 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 54 (a)
OneToMany
Species where no ortholog for AMY1C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for AMY1C Gene

ENSEMBL:
Gene Tree for AMY1C (if available)
TreeFam:
Gene Tree for AMY1C (if available)

Paralogs for AMY1C Gene

Paralogs for AMY1C Gene

(4) SIMAP similar genes for AMY1C Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with AMY1C: view

Variants for AMY1C Gene

Sequence variations from dbSNP and Humsavar for AMY1C Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1002302238 -- 103,755,603(+) GAAGT(C/G)CGCTA intron-variant
rs1004948451 -- 103,747,560(+) ATCTT(-/GGTTTGA)GGTCT intron-variant
rs1008774139 -- 103,749,414(+) GATAT(G/T)CGACA intron-variant, upstream-variant-2KB
rs1010980411 -- 103,754,772(+) CGAGT(A/G)ATGTC reference, synonymous-codon
rs1015105309 -- 103,756,018(+) TAGCA(C/T)ATGTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AMY1C Gene

Variant ID Type Subtype PubMed ID
dgv13n111 CNV duplication 26073780
dgv151e59 CNV duplication 20981092
dgv1n31 CNV gain 19718026
dgv213n100 CNV gain 25217958
dgv217n100 CNV gain 25217958
dgv218n100 CNV gain 25217958
dgv219n100 CNV loss 25217958
dgv220n100 CNV gain+loss 25217958
dgv221n100 CNV gain+loss 25217958
dgv222n100 CNV gain 25217958
dgv223n100 CNV gain+loss 25217958
dgv224n100 CNV loss 25217958
dgv225n100 CNV gain 25217958
dgv226n100 CNV loss 25217958
dgv227n100 CNV gain+loss 25217958
dgv228n100 CNV loss 25217958
dgv229n100 CNV gain 25217958
dgv2e203 CNV gain+loss 21179565
dgv392n54 CNV gain 21841781
dgv395n54 CNV gain 21841781
dgv397n54 CNV loss 21841781
dgv3n14 CNV loss 18776910
dgv401n54 CNV loss 21841781
dgv404n54 CNV loss 21841781
dgv405n54 CNV loss 21841781
dgv408n54 CNV gain 21841781
dgv412n54 CNV gain+loss 21841781
dgv416n54 CNV loss 21841781
dgv420n54 CNV loss 21841781
dgv424n54 CNV gain 21841781
dgv430n54 CNV gain 21841781
dgv431n54 CNV gain 21841781
dgv433n54 CNV gain 21841781
dgv434n54 CNV loss 21841781
dgv435n54 CNV loss 21841781
dgv436n54 CNV loss 21841781
dgv437n54 CNV gain 21841781
dgv438n54 CNV loss 21841781
dgv442n54 CNV gain 21841781
dgv445n54 CNV loss 21841781
dgv58n67 CNV gain 20364138
dgv68e212 CNV gain 25503493
esv1003868 CNV gain 20482838
esv23292 CNV gain+loss 19812545
esv2715585 CNV deletion 23290073
esv2758954 CNV gain+loss 17122850
esv3325833 CNV duplication 20981092
esv3333467 CNV duplication 20981092
esv3349637 CNV duplication 20981092
esv3362783 CNV duplication 20981092
esv3363699 CNV duplication 20981092
esv3377623 CNV duplication 20981092
esv3440390 CNV duplication 20981092
esv3440685 CNV duplication 20981092
esv3893856 CNV gain+loss 25118596
esv3893867 CNV loss 25118596
nsv1007406 CNV gain 25217958
nsv1008015 CNV gain+loss 25217958
nsv1012949 CNV gain 25217958
nsv10428 CNV gain+loss 18304495
nsv1110133 CNV duplication 24896259
nsv1110134 CNV duplication 24896259
nsv1118436 CNV duplication 24896259
nsv1139485 CNV duplication 24896259
nsv1146460 CNV duplication 26484159
nsv1150659 CNV duplication 26484159
nsv1152675 CNV duplication 26484159
nsv1161046 CNV deletion 26073780
nsv2176 CNV deletion 18451855
nsv428157 CNV gain+loss 18775914
nsv469513 CNV gain 16826518
nsv471346 CNV gain 19718026
nsv471437 CNV gain 19718026
nsv471677 CNV gain+loss 15918152
nsv482059 CNV gain 20164927
nsv483008 CNV gain+loss 15286789
nsv511121 OTHER complex 20534489
nsv517215 CNV gain+loss 19592680
nsv526367 CNV gain 19592680
nsv546976 CNV gain 21841781
nsv547016 CNV gain+loss 21841781
nsv547116 CNV gain+loss 21841781
nsv547147 CNV loss 21841781
nsv547166 CNV loss 21841781
nsv547172 CNV loss 21841781
nsv547173 CNV gain 21841781
nsv547175 CNV loss 21841781
nsv547185 CNV gain+loss 21841781
nsv547197 CNV loss 21841781
nsv547200 CNV gain 21841781
nsv547204 CNV loss 21841781
nsv547205 CNV loss 21841781
nsv7179 OTHER inversion 18451855
nsv830915 CNV gain+loss 17160897
nsv945582 CNV duplication 23825009
nsv946110 CNV duplication 23825009
nsv946112 CNV duplication 23825009
nsv950526 CNV duplication 24416366
nsv950527 CNV duplication 24416366

Variation tolerance for AMY1C Gene

Gene Damage Index Score: 0.21; 4.69% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for AMY1C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AMY1C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for AMY1C Gene

Disorders for AMY1C Gene

MalaCards: The human disease database

(1) MalaCards diseases for AMY1C Gene - From: DISEASES

Disorder Aliases PubMed IDs
avoidant personality disorder
  • anxious personality disorder
- elite association - COSMIC cancer census association via MalaCards
Search AMY1C in MalaCards View complete list of genes associated with diseases

Relevant External Links for AMY1C

Genetic Association Database (GAD)
AMY1C
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AMY1C
genes like me logo Genes that share disorders with AMY1C: view

No data available for UniProtKB/Swiss-Prot and Genatlas for AMY1C Gene

Publications for AMY1C Gene

  1. Concerted evolution of human amylase genes. (PMID: 2452973) Gumucio DL … Meisler MH (Molecular and cellular biology 1988) 3 4 60
  2. Primary structure of human salivary alpha-amylase gene. (PMID: 2423416) Nishide T … Matsubara K (Gene 1986) 3 4 60
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  4. Salivary alpha amylase diurnal pattern and stress response are associated with body mass index in low-income preschool-aged children. (PMID: 25588701) Miller AL … Lumeng JC (Psychoneuroendocrinology 2015) 3 60
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 60

Products for AMY1C Gene

Sources for AMY1C Gene

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