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Aliases for AMMECR1L Gene

Aliases for AMMECR1L Gene

  • AMMECR1-Like 2 3
  • AMME Chromosomal Region Gene 1-Like 2

External Ids for AMMECR1L Gene

Previous GeneCards Identifiers for AMMECR1L Gene

  • GC02M128336
  • GC02M128619
  • GC02M120925

Summaries for AMMECR1L Gene

GeneCards Summary for AMMECR1L Gene

AMMECR1L (AMMECR1-Like) is a Protein Coding gene. An important paralog of this gene is AMMECR1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AMMECR1L Gene

Genomics for AMMECR1L Gene

Regulatory Elements for AMMECR1L Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for AMMECR1L Gene

Start:
127,861,630 bp from pter
End:
127,885,940 bp from pter
Size:
24,311 bases
Orientation:
Minus strand

Genomic View for AMMECR1L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for AMMECR1L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AMMECR1L Gene

Proteins for AMMECR1L Gene

  • Protein details for AMMECR1L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6DCA0-AMERL_HUMAN
    Recommended name:
    AMMECR1-like protein
    Protein Accession:
    Q6DCA0
    Secondary Accessions:
    • B4E276

    Protein attributes for AMMECR1L Gene

    Size:
    310 amino acids
    Molecular mass:
    34499 Da
    Quaternary structure:
    No Data Available

neXtProt entry for AMMECR1L Gene

Proteomics data for AMMECR1L Gene at MOPED

Post-translational modifications for AMMECR1L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for AMMECR1L Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for AMMECR1L Gene

Domains for AMMECR1L Gene

Protein Domains for AMMECR1L Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for AMMECR1L Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6DCA0

UniProtKB/Swiss-Prot:

AMERL_HUMAN :
  • Q6DCA0
Domain:
  • Contains 1 AMMECR1 domain.
genes like me logo Genes that share domains with AMMECR1L: view

No data available for Gene Families for AMMECR1L Gene

Function for AMMECR1L Gene

Phenotypes for AMMECR1L Gene

GenomeRNAi human phenotypes for AMMECR1L:
genes like me logo Genes that share phenotypes with AMMECR1L: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for AMMECR1L

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for AMMECR1L Gene

Localization for AMMECR1L Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for AMMECR1L Gene COMPARTMENTS Subcellular localization image for AMMECR1L gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for AMMECR1L Gene

Pathways for AMMECR1L Gene

SuperPathways for AMMECR1L Gene

No Data Available

Interacting Proteins for AMMECR1L Gene

STRING Interaction Network Preview (showing 5 interactants - click image to see 6)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000272647%0d%0a9606.ENSP00000263925%0d%0a9606.ENSP00000362931%0d%0a9606.ENSP00000377262%0d%0a9606.ENSP00000385269%0d%0a9606.ENSP00000358622%0d%0a
Selected Interacting proteins: ENSP00000272647 Q6DCA0-AMERL_HUMAN for AMMECR1L Gene via STRING I2D

Gene Ontology (GO) - Biological Process for AMMECR1L Gene

None

No data available for Pathways by source for AMMECR1L Gene

Transcripts for AMMECR1L Gene

Unigene Clusters for AMMECR1L Gene

AMMECR1-like:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for AMMECR1L

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for AMMECR1L Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10a · 10b
SP1: - -
SP2: -
SP3:
SP4: -

Relevant External Links for AMMECR1L Gene

GeneLoc Exon Structure for
AMMECR1L
ECgene alternative splicing isoforms for
AMMECR1L

Expression for AMMECR1L Gene

mRNA expression in normal human tissues for AMMECR1L Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for AMMECR1L Gene

SOURCE GeneReport for Unigene cluster for AMMECR1L Gene Hs.546449

genes like me logo Genes that share expressions with AMMECR1L: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for AMMECR1L Gene

Orthologs for AMMECR1L Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for AMMECR1L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia AMMECR1L 35
  • 100 (n)
  • 100 (a)
AMMECR1L 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia AMMECR1L 35
  • 95.59 (n)
  • 99.68 (a)
AMMECR1L 36
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia AMMECR1L 35
  • 97.53 (n)
  • 99.68 (a)
AMMECR1L 36
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ammecr1l 35
  • 94.3 (n)
  • 98.39 (a)
Ammecr1l 16
Ammecr1l 36
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia AMMECR1L 36
  • 98 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia AMMECR1L 36
  • 91 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ammecr1l 35
  • 94.95 (n)
  • 98.71 (a)
chicken
(Gallus gallus)
Aves AMMECR1L 35
  • 88.39 (n)
  • 96.13 (a)
AMMECR1L 36
  • 96 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia AMMECR1L 36
  • 95 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ammecr1l 35
  • 74.34 (n)
  • 80.22 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.13202 35
fruit fly
(Drosophila melanogaster)
Insecta CG5902 36
  • 55 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea R166.3 36
  • 43 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes -- 36
  • 27 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.9118 36
  • 45 (a)
OneToMany
Species with no ortholog for AMMECR1L:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for AMMECR1L Gene

ENSEMBL:
Gene Tree for AMMECR1L (if available)
TreeFam:
Gene Tree for AMMECR1L (if available)

Paralogs for AMMECR1L Gene

Paralogs for AMMECR1L Gene

Selected SIMAP similar genes for AMMECR1L Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for AMMECR1L Gene

genes like me logo Genes that share paralogs with AMMECR1L: view

Variants for AMMECR1L Gene

Sequence variations from dbSNP and Humsavar for AMMECR1L Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs893171 -- 127,868,070(+) GGTTT(C/T)GCCAC intron-variant
rs1045832 -- 127,863,520(-) TTCTG(C/T)CAGGA utr-variant-3-prime
rs1550175 -- 127,864,327(+) GGCAT(C/T)TCCAT utr-variant-3-prime
rs1808801 -- 127,868,781(+) GTGTA(A/G)TGGCA intron-variant
rs2118203 -- 127,863,562(+) CATTT(C/T)GGAAA utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for AMMECR1L Gene

Variant ID Type Subtype PubMed ID
nsv834367 CNV Loss 17160897
esv268180 CNV Insertion 20981092
esv272652 CNV Insertion 20981092

Relevant External Links for AMMECR1L Gene

HapMap Linkage Disequilibrium report
AMMECR1L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for AMMECR1L Gene

Disorders for AMMECR1L Gene

Relevant External Links for AMMECR1L

Genetic Association Database (GAD)
AMMECR1L
genes like me logo Genes that share disorders with AMMECR1L: view

No data available for UniProtKB/Swiss-Prot for AMMECR1L Gene

Publications for AMMECR1L Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  4. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 3
  5. Expanding the substantial interactome of NEMO using protein microarrays. (PMID: 20098747) Fenner B.J. … Prehn J.H. (PLoS ONE 2010) 3

Products for AMMECR1L Gene

Sources for AMMECR1L Gene

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