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Aliases for AMMECR1-IT1 Gene

Subcategory (RNA class) for AMMECR1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for AMMECR1-IT1 Gene

  • AMMECR1 Intronic Transcript 1 2 3 5
  • AMMECR1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for AMMECR1-IT1 Gene

Previous GeneCards Identifiers for AMMECR1-IT1 Gene

  • GC00U933059
  • GC0XM109549

Summaries for AMMECR1-IT1 Gene

GeneCards Summary for AMMECR1-IT1 Gene

AMMECR1-IT1 (AMMECR1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for AMMECR1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AMMECR1-IT1 Gene

Genomics for AMMECR1-IT1 Gene

Regulatory Elements for AMMECR1-IT1 Gene

Enhancers for AMMECR1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH110315 1 ENCODE 0.4 -10.3 -10278 3 SIN3A FEZF1 GLI4 ZNF2 YY1 ZNF766 GLIS2 ELK1 ATF7 YY2 RTL9 LOC105373312 AMMECR1-IT1
GH0XH110282 0.9 Ensembl ENCODE 0.3 +22.2 22154 4 STAT1 RFX1 JUN MAX USF2 CEBPB JUNB CEBPG BATF EP300 AMMECR1-IT1 SNORD96B GC0XM110227
GH0XH110229 1.2 Ensembl ENCODE 0.2 +77.3 77326 1 HDAC1 ATF1 RB1 NFRKB ZNF76 KLF17 SIN3A YY1 EGR1 FOS GC0XM110227 SNORD96B AMMECR1-IT1
GH0XH110281 0.5 ENCODE 0.3 +26.1 26094 0 OSR2 PKNOX1 PRDM6 BCL11A BCL11B AMMECR1-IT1 GC0XM110227 SNORD96B
GH0XH110236 0.4 ENCODE 0.2 +69.2 69228 2 FOXK2 ZNF24 GC0XM110227 SNORD96B AMMECR1-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AMMECR1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for AMMECR1-IT1 Gene

Chromosome:
X
Start:
110,305,420 bp from pter
End:
110,307,221 bp from pter
Size:
1,802 bases
Orientation:
Minus strand

Genomic View for AMMECR1-IT1 Gene

Genes around AMMECR1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AMMECR1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AMMECR1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for AMMECR1-IT1 Gene

Proteins for AMMECR1-IT1 Gene

Post-translational modifications for AMMECR1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AMMECR1-IT1 Gene

Domains & Families for AMMECR1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AMMECR1-IT1 Gene

Function for AMMECR1-IT1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for AMMECR1-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AMMECR1-IT1 Gene

Localization for AMMECR1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AMMECR1-IT1 Gene

Pathways & Interactions for AMMECR1-IT1 Gene

SuperPathways for AMMECR1-IT1 Gene

No Data Available

Interacting Proteins for AMMECR1-IT1 Gene

Gene Ontology (GO) - Biological Process for AMMECR1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AMMECR1-IT1 Gene

Drugs & Compounds for AMMECR1-IT1 Gene

No Compound Related Data Available

Transcripts for AMMECR1-IT1 Gene

mRNA/cDNA for AMMECR1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for AMMECR1-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for AMMECR1-IT1 Gene

No ASD Table

Relevant External Links for AMMECR1-IT1 Gene

GeneLoc Exon Structure for
AMMECR1-IT1
ECgene alternative splicing isoforms for
AMMECR1-IT1

Expression for AMMECR1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AMMECR1-IT1 Gene

genes like me logo Genes that share expression patterns with AMMECR1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AMMECR1-IT1 Gene

Orthologs for AMMECR1-IT1 Gene

Evolution for AMMECR1-IT1 Gene

ENSEMBL:
Gene Tree for AMMECR1-IT1 (if available)
TreeFam:
Gene Tree for AMMECR1-IT1 (if available)

No data available for Orthologs for AMMECR1-IT1 Gene

Paralogs for AMMECR1-IT1 Gene

No data available for Paralogs for AMMECR1-IT1 Gene

Variants for AMMECR1-IT1 Gene

Relevant External Links for AMMECR1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AMMECR1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AMMECR1-IT1 Gene

Disorders for AMMECR1-IT1 Gene

No disorders were found for AMMECR1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AMMECR1-IT1 Gene

Publications for AMMECR1-IT1 Gene

No publications were found for AMMECR1-IT1 Gene.

Products for AMMECR1-IT1 Gene

Sources for AMMECR1-IT1 Gene

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