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Aliases for ALS2CR12 Gene

Aliases for ALS2CR12 Gene

  • Amyotrophic Lateral Sclerosis 2 Chromosome Region Candidate 12 2 3 5
  • Amyotrophic Lateral Sclerosis 2 (Juvenile) Chromosome Region, Candidate 12 2

External Ids for ALS2CR12 Gene

Previous GeneCards Identifiers for ALS2CR12 Gene

  • GC02M200370
  • GC02M200877
  • GC02M202117
  • GC02M202355
  • GC02M201978
  • GC02M201861
  • GC02M194001

Summaries for ALS2CR12 Gene

GeneCards Summary for ALS2CR12 Gene

ALS2CR12 (Amyotrophic Lateral Sclerosis 2 Chromosome Region Candidate 12) is a Protein Coding gene. Diseases associated with ALS2CR12 include amyotrophic lateral sclerosis 2, juvenile and lateral sclerosis.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALS2CR12 Gene

Genomics for ALS2CR12 Gene

Regulatory Elements for ALS2CR12 Gene

Genomic Location for ALS2CR12 Gene

Chromosome:
2
Start:
201,288,271 bp from pter
End:
201,357,398 bp from pter
Size:
69,128 bases
Orientation:
Minus strand

Genomic View for ALS2CR12 Gene

Genes around ALS2CR12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALS2CR12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALS2CR12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALS2CR12 Gene

Proteins for ALS2CR12 Gene

  • Protein details for ALS2CR12 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96Q35-AL2SB_HUMAN
    Recommended name:
    Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 12 protein
    Protein Accession:
    Q96Q35
    Secondary Accessions:
    • G5E9S3
    • Q53TT6
    • Q8N1B6

    Protein attributes for ALS2CR12 Gene

    Size:
    445 amino acids
    Molecular mass:
    52439 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ALS2CR12 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ALS2CR12 Gene

Proteomics data for ALS2CR12 Gene at MOPED

Post-translational modifications for ALS2CR12 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ALS2CR12 Gene

Domains & Families for ALS2CR12 Gene

Protein Domains for ALS2CR12 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for ALS2CR12 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ALS2CR12: view

No data available for Gene Families and UniProtKB/Swiss-Prot for ALS2CR12 Gene

Function for ALS2CR12 Gene

genes like me logo Genes that share phenotypes with ALS2CR12: view

Animal Model Products

CRISPR Products

miRNA for ALS2CR12 Gene

miRTarBase miRNAs that target ALS2CR12

Inhibitory RNA Products

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ALS2CR12 Gene

Localization for ALS2CR12 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ALS2CR12 Gene COMPARTMENTS Subcellular localization image for ALS2CR12 gene
Compartment Confidence
cytosol 2
mitochondrion 2
plasma membrane 2
nucleus 1

Gene Ontology (GO) - Cellular Components for ALS2CR12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0036126 sperm flagellum IEA --
genes like me logo Genes that share ontologies with ALS2CR12: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for ALS2CR12 Gene

Pathways & Interactions for ALS2CR12 Gene

SuperPathways for ALS2CR12 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ALS2CR12 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ALS2CR12 Gene

Drugs & Compounds for ALS2CR12 Gene

No Compound Related Data Available

Transcripts for ALS2CR12 Gene

Unigene Clusters for ALS2CR12 Gene

Amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ALS2CR12 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14a · 14b · 14c
SP1: -
SP2: -
SP3: - -

Relevant External Links for ALS2CR12 Gene

GeneLoc Exon Structure for
ALS2CR12
ECgene alternative splicing isoforms for
ALS2CR12

Expression for ALS2CR12 Gene

mRNA expression in normal human tissues for ALS2CR12 Gene

mRNA differential expression in normal tissues according to GTEx for ALS2CR12 Gene

This gene is overexpressed in Testis (x10.5).

Protein differential expression in normal tissues from HIPED for ALS2CR12 Gene

This gene is overexpressed in Fetal Brain (66.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ALS2CR12 Gene



SOURCE GeneReport for Unigene cluster for ALS2CR12 Gene Hs.107944

genes like me logo Genes that share expression patterns with ALS2CR12: view

Protein tissue co-expression partners for ALS2CR12 Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for ALS2CR12 Gene

Orthologs for ALS2CR12 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ALS2CR12 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ALS2CR12 35
  • 99.29 (n)
  • 98.34 (a)
ALS2CR12 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ALS2CR12 36
  • 74 (a)
OneToOne
ALS2CR12 35
  • 83.25 (n)
  • 76.81 (a)
dog
(Canis familiaris)
Mammalia ALS2CR12 35
  • 83.17 (n)
  • 74.4 (a)
ALS2CR12 36
  • 73 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Als2cr12 16
Als2cr12 36
  • 61 (a)
OneToOne
Als2cr12 35
  • 74.96 (n)
  • 62.7 (a)
oppossum
(Monodelphis domestica)
Mammalia ALS2CR12 36
  • 49 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ALS2CR12 36
  • 50 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Als2cr12 35
  • 77.22 (n)
  • 68.09 (a)
lizard
(Anolis carolinensis)
Reptilia ALS2CR12 36
  • 42 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia als2cr12 35
  • 46.61 (n)
  • 28.61 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 13 (a)
OneToOne
Species with no ortholog for ALS2CR12:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ALS2CR12 Gene

ENSEMBL:
Gene Tree for ALS2CR12 (if available)
TreeFam:
Gene Tree for ALS2CR12 (if available)

Paralogs for ALS2CR12 Gene

No data available for Paralogs for ALS2CR12 Gene

Variants for ALS2CR12 Gene

Sequence variations from dbSNP and Humsavar for ALS2CR12 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs13014235 - 201,350,769(+) TGGTA(C/G)AAGAG nc-transcript-variant, upstream-variant-2KB, reference, missense
rs1035142 -- 201,288,355(+) CAATA(G/T)GAAGA nc-transcript-variant, downstream-variant-500B, utr-variant-3-prime
rs1918881 -- 201,325,945(+) taacc(A/G)acccc intron-variant
rs1966423 -- 201,351,938(+) ACTTC(C/G)TCTCA intron-variant, upstream-variant-2KB
rs2080302 -- 201,300,358(+) caagg(C/T)agcag intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ALS2CR12 Gene

Variant ID Type Subtype PubMed ID
esv1004879 CNV Deletion 20482838
nsv507062 CNV Insertion 20534489
nsv875708 CNV Gain 21882294

Variation tolerance for ALS2CR12 Gene

Residual Variation Intolerance Score: 73.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.57; 30.37% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ALS2CR12 Gene

HapMap Linkage Disequilibrium report
ALS2CR12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ALS2CR12 Gene

Disorders for ALS2CR12 Gene

MalaCards: The human disease database

(3) MalaCards diseases for ALS2CR12 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
amyotrophic lateral sclerosis 2, juvenile
  • als, juvenile
lateral sclerosis
  • motor neuron disease
amyotrophic lateral sclerosis type 2
  • amyotrophic lateral sclerosis 2, juvenile
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for ALS2CR12

Genetic Association Database (GAD)
ALS2CR12
Human Genome Epidemiology (HuGE) Navigator
ALS2CR12
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ALS2CR12
genes like me logo Genes that share disorders with ALS2CR12: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ALS2CR12 Gene

Publications for ALS2CR12 Gene

  1. Genome-wide association study identifies three new melanoma susceptibility loci. (PMID: 21983787) Barrett J.H. … Bishop D.T. (Nat. Genet. 2011) 3 48 67
  2. Identification and characterization of novel associations in the CASP8/ALS2CR12 region on chromosome 2 with breast cancer risk. (PMID: 25168388) Lin W.Y. … Cox A. (Hum. Mol. Genet. 2015) 3
  3. New basal cell carcinoma susceptibility loci. (PMID: 25855136) Stacey S.N. … Stefansson K. (Nat Commun 2015) 3
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  5. Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations. (PMID: 25129146) Wu C. … Chanock S.J. (Nat. Genet. 2014) 3

Products for ALS2CR12 Gene

Sources for ALS2CR12 Gene

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