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Aliases & Descriptions for ALPP
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| ALP 2 | | EC 3.1.3.1 3 | | FLJ61142 2 | | PALP 2 | | PLAP 2, 3 | | PLAP-1 3 | | glycerophosphatase 2 |
| | | Descriptions |
|---|
| Alkaline phosphatase Regan isozyme 3 | | alkaline phosphatase, placental (Regan isozyme) 2 | | alkaline phosphomonoesterase 2 | | placental alkaline phosphatase 2 |
|
| | Search outside databases for aliases for ALPP genePrevious GC identifers: GC02P231300 GC02P231972 GC02P233207 GC02P233445 GC02P233068 |
Summaries for ALPP(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ALPP: There are at least four distinct but related alkaline phosphatases: intestinal, placental, placental-like, and liver/bone/kidney (tissue non-specific). The first three are located together on chromosome 2 while the tissue non-specific form is located on chromosome 1. The product of this gene is a membrane bound glycosylated enzyme, also referred to as the heat stable form, that is expressed primarily in the placenta although it is closely related to the intestinal form of the enzyme as well as to the placental-like form. The coding sequence for this form of alkaline phosphatase is unique in that the 3' untranslated region contains multiple copies of an Alu family repeat. In addition, this gene is polymorphic and three common alleles (type 1, type 2 and type 3) for this form of alkaline phosphatase have been well characterized. [provided by RefSeq] Gene Wiki entry for ALPP |
Genomic Location for ALPP
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ALPP gene 
Entrez Gene cytogenetic band: 2q37 Ensembl cytogenetic band: 2q37.1 HGNC cytogenetic band: 2q37.1ALPP Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02P232951:
(about GC identifiers)
Start:
|
232,951,592 bp from pter |
End:
|
232,955,843 bp from pter |
Size:
|
4,252 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000002.10 NT_005403.16
| Proteins for ALPP
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: PPB1_HUMAN, P05187 (See
protein sequence)Recommended Name: Alkaline phosphatase, placental type precursor Size: 535 amino acids; 57954 Da
Cofactor: Binds 1 magnesium ion (By similarity)
Cofactor: Binds 2 zinc ions (By similarity)
Subunit: Homodimer
Subcellular location: Cell membrane; Lipid-anchor, GPI-anchor
Miscellaneous: In most mammals there are four different isozymes: placental, placental-like, intestinal and tissue non-specific (liver/bone/kidney)
PDB structures from and Proteopedia :1EW2 (3D)
 1ZEB (3D)
 1ZED (3D)
 1ZEF (3D)
 2GLQ (3D)
 
Secondary accessions: P05188 P06861 Q53S78 Q96DB7Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001623.3
ENSEMBL proteins: ENSP00000375881
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ALPP: Assays for ALPP: | Protein
Domains/ Families for ALPP(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P05187
ProtoNet protein and cluster: P05187 1 Blocks protein family: IPB001952 Alkaline phosphatase
UniProtKB/Swiss-Prot: PPB1_HUMAN, P05187Similarity: Belongs to the alkaline phosphatase family | Gene Function for ALPP
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001632
Applied Biosystems Silencer® siRNAs for ALPP
Sigma-Aldrich siRNA and siRNA Panels for ALPP  Sigma-Aldrich shRNA Panels and shRNA for ALPP  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001632                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001632                                  untagged cDNA clone in CMV expression vector: NM_001632 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001632
UniProtKB/Swiss-Prot: PPB1_HUMAN, P05187Catalytic activity: A phosphate monoester + H(2)O = an alcohol + phosphateEnzyme Number (IUBMB): EC 3.1.3.1 Genatlas biochemistry entry for ALPP:phosphatase alkaline,placental (Regan isozyme)4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ALPP
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for ALPP (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for ALPP 
5/41 Interacting proteins for ALPP (P051872) via UniProtKB, MINT, and/or STRING (see all 41
)About this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0008152 | metabolic process |
IEA | -- | About this table
|
Drugs & Compounds for ALPP(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  | Sigma-Aldrich Small Molecules for ALPP: Inhibitor |
Browse Tocris compounds for ALPP 10/39 Novoseek chemical compound relationships for ALPP gene (see all 39
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| alizarin |
79.05 |
29 |
16546826 (2), 16845965 (2), 18228270 (2), 16530029 (1) (see all 21) |
| p-nitrophenyl phosphate |
72.70 |
28 |
15895474 (2), 11816056 (1), 8222223 (1), 8034777 (1) (see all 19) |
| deoxypyridinoline |
69.73 |
71 |
15050907 (4), 8911707 (3), 14727010 (2), 15166484 (2) (see all 33) |
| akermanite |
69.41 |
2 |
16904740 (1) |
| hydroxyapatite |
65.63 |
60 |
12740096 (3), 18270806 (2), 19012271 (2), 17380293 (2) (see all 33) |
| amppd |
65.03 |
7 |
18402780 (1), 18452138 (1), 16643808 (1), 17719901 (1) |
| pyridinoline |
63.64 |
33 |
10541322 (1), 15860920 (1), 9738702 (1), 14727010 (1) (see all 15) |
| phenylphosphate |
61.63 |
7 |
15620894 (1), 9823722 (1), 9140440 (1), 17723415 (1) (see all 5) |
| titanium |
61.36 |
26 |
16857255 (3), 15735901 (3), 19290435 (2), 12656459 (2) (see all 12) |
| cd 2019 |
60.68 |
3 |
8216300 (3) |
About this table
|
Transcripts for ALPP(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001632
Sigma-Aldrich siRNA and siRNA Panels for ALPP  Sigma-Aldrich shRNA Panels and shRNA for ALPP  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001632 REFSEQ mRNAs for ALPP gene: NM_001632.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001632               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001632                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001632                                  untagged cDNA clone in CMV expression vector: NM_001632  Additional cDNA sequence: AF217992.1 AK075432.1 BC009647.1 BC068501.1 BC094743.1 CR599162.1 CR621490.1 M12551.1 M14169.1 M14170.1 6 DOTS entries: DT.100687963 DT.100748673 DT.87016630 DT.95156278 DT.95156286 DT.95156280 24/152 AceView cDNA sequences (see all 152
):AL554586 BM742455 CR599162 BX095665 AL553983 AF217992 BM742176 BX439339 R31098 M14169 BM744140 BC068501 CR621490 AL553521 BE549393 X55958 CB959579 H04758 AL549703 M12551 T29404 BM773091 R64663 BG832086
highest scoring ESTs for ALPP:AA156691 AA367819 AF217992 AI457757 AK075432 AL568578 AL573803 AL576494 AL576838 BC009647 Unigene Cluster for ALPP: Alkaline phosphatase, placental (Regan isozyme) Hs.284255 [show with all ESTs]Unigene Representative Sequence: NM_001632
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000392027
|
Expression for ALPP
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ALPP expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ALPP
1 / 2 / 3 4 probe-sets matching ALPP gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CCAATTTCAG
SOURCE GeneReport for Unigene cluster: Hs.284255
|
Orthologs for ALPP
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ALPP gene from 5/6 species (see all 6
)
About this table Species with no ortholog for ALPP
ENSEMBL Gene Tree for ALPP | Paralogs for ALPP(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ALPP gene
- ALPPL21 2 ALPL2 ALPI2
|
SNPs/Variants for ALPP(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| UniProtKB/Swiss-Prot: PPB1_HUMAN, P05187Polymorphism: Placental ALP is highly polymorphic, there are at least three common alleles
HapMap Linkage Disequilibrium images for ALPP (up to first 250kb)
|
Disorders & Mutations for ALPP
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 171800
10/94 Novoseek disease relationships for ALPP gene (see all 94
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| hypophosphatasia |
84.28 |
26 |
10451522 (2), 9536930 (2), 2079838 (1), 8675582 (1) (see all 19) |
| seminoma |
78.87 |
102 |
2273701 (5), 8653285 (4), 1646453 (3), 17629966 (3) (see all 41) |
| alkaline phosphatase, elevated serum |
78.81 |
17 |
19212310 (1), 7723166 (1), 7780263 (1), 11142449 (1) (see all 16) |
| germinoma |
70.62 |
24 |
19106497 (2), 1723169 (2), 1966857 (1), 8615089 (1) (see all 14) |
| osteosarcoma |
63.29 |
40 |
1651438 (2), 1702922 (2), 9914326 (2), 1611300 (1) (see all 27) |
| biliary cirrhosis primary |
60.91 |
6 |
1934501 (1), 1541936 (1), 18084701 (1), 10535881 (1) (see all 6) |
| yolk sac tumor |
59.67 |
4 |
10469400 (1), 1690172 (1), 8757478 (1) |
| bone diseases |
59.17 |
17 |
1458597 (1), 1940065 (1), 9283233 (1), 7923809 (1) (see all 14) |
| calcification |
57.74 |
70 |
16958693 (3), 15974530 (3), 11401534 (3), 18160010 (2) (see all 48) |
| osteoporosis |
56.58 |
5 |
12634938 (2), 15207757 (1), 9633020 (1), 18581891 (1) |
About this table
Genetic Association Database: ALPP Human Genome Epidemiology Navigator: ALPP (1 document)
|
Medical News for ALPP(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ALPP (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/1268 PubMed articles for ALPP gene (see all 1268
):- Products of two common alleles at the locus for human placental alkaline phosphatase differ by seven amino acids. (PubMed id 3461452)2, 3, 4 Henthorn P.S....Harris H. (1986)
- Cloning, sequencing, and chromosomal localization of human term placental alkaline phosphatase cDNA. (PubMed id 3001717)2, 3, 4 Kam W.... Rutter W.J. (1985)
- Enzyme polymorphisms, smoking, and human reproduction. A study of human placental alkaline phosphatase. (PubMed id 14595869)1, 3, 6 Magrini A....Bottini E. (2003)
- Crystal structure of alkaline phosphatase from human placenta at 1.8 A resolution. Implication for a substrate specificity. (PubMed id 11124260)1, 3, 4 Le Du M.H.... Stura E.A. (2001)
- Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)3, 4 Hillier L.W....Wilson R.K. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Function assignment to conserved residues in mammalian alkaline phosphatases. (PubMed id 11937510)3, 4 Kozlenkov A.... Millan J.L. (2002)
- Site-specific mutations in the COOH-terminus of placental alkaline phosphatase: a single amino acid change converts a phosphatidylinositol-glycan-anchored protein to a secreted protein. (PubMed id 1730777)3, 4 Lowe M.E. (1992)
- Selectivity of the cleavage/attachment site of phosphatidylinositol- glycan-anchored membrane proteins determined by site-specific mutagenesis at Asp-484 of placental alkaline phosphatase. (PubMed id 2153284)3, 4 Micanovic R.... Udenfriend S. (1990)
- Aspartic acid-484 of nascent placental alkaline phosphatase condenses with a phosphatidylinositol glycan to become the carboxyl terminus of the mature enzyme. (PubMed id 3422741)3, 4 Micanovic R.... Udenfriend S. (1988)
|
Search for ALPP
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ALPP
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ALPP
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ALPP(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| Wikipedia | http://en.wikipedia.org/wiki/Alkaline_phosphatase |
|
| | | About This Section
| --
| Services for ALPP(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ALPP:

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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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