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Aliases & Descriptions for ALPL
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases AP-TNAP 2 , 3 EC 3.1.3.1 3 FLJ40094 2 FLJ93059 2 HOPS 2 , 5 MGC161443 2 MGC167935 2 OTTHUMP00000002971 2 OTTHUMP00000002972 2 TNAP 2 TNSALP 1 , 2 , 3 , 5 glycerophosphatase 2
Descriptions Alkaline phosphatase liver/bone/kidney isozyme 3 alkaline phosphatase, liver/bone/kidney 2 alkaline phosphatase, tissue-nonspecific isozyme 2 alkaline phosphomonoesterase 2 liver/bone/kidney-type alkaline phosphatase 2 tissue-nonspecific ALP 2 tissue-nonspecific alkaline phosphatase 2
Search outside databases for aliases for ALPL genePrevious GC identifers: GC01P021405 GC01P020871 GC01P020981 GC01P021305 GC01P021581
Summaries for ALPL (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ALPL : There are at least four distinct but related alkaline phosphatases: intestinal, placental,placental-like, and liver/bone/kidney (tissue non-specific). The first three are located togetheron chromosome 2, while the tissue non-specific form is located on chromosome 1. The product ofthis gene is a membrane bound glycosylated enzyme that is not expressed in any particular tissueand is, therefore, referred to as the tissue-nonspecific form of the enzyme. The exactphysiological function of the alkaline phosphatases is not known. A proposed function of this formof the enzyme is matrix mineralization; however, mice that lack a functional form of this enzymeshow normal skeletal development. This enzyme has been linked directly to hypophosphatasia, adisorder that is characterized by hypercalcemia and includes skeletal defects. The character ofthis disorder can vary, however, depending on the specific mutation since this determines age ofonset and severity of symptoms. Alternatively spliced transcript variants, which encode the sameprotein, have been identified for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: PPBT_HUMAN, P05186 Function : This isozyme may play a role in skeletal mineralization
Gene Wiki entry for ALPL
Genomic Location for ALPL
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ALPL gene Entrez Gene cytogenetic band: 1p36.12 Ensembl cytogenetic band: 1p36.12 HGNC cytogenetic band: 1p36.12 ALPL Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P021708:
(about GC identifiers )
Start:
21,708,445 bp from pter
End:
21,777,492 bp from pter
Size:
69,048 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000001.9 NT_004610.18 Proteins for ALPL
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: PPBT_HUMAN, P05186 (See
protein sequence )Recommended Name: Alkaline phosphatase, tissue-nonspecific isozyme precursor Size : 524 amino acids; 57305 Da
Cofactor : Binds 1 magnesium ion (By similarity)
Cofactor : Binds 2 zinc ions (By similarity)
Subunit : Homodimer
Subcellular location : Cell membrane; Lipid-anchor, GPI-anchor
Miscellaneous : In most mammals there are four different isozymes: placental, placental-like,intestinal and tissue non-specific (liver/bone/kidney)
Secondary accessions : A1A4E7 B2RMP8 O75090 Q2TAI7 Q59EJ7 Q5BKZ5 Q5VTG5 Q6NZI8 Q8WU32 Q9UBK0
Post-translational modifications:
Glycosylated1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_000469.3 NP_001120973.1 ENSEMBL proteins: ENSP00000363973 ENSP00000363962 ENSP00000363965 ENSP00000363963 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ALPL: Assays for ALPL:
Protein
Domains/ Families for ALPL(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P05186 ProtoNet protein and cluster: P05186
1 Blocks protein family : IPB001952 Alkaline phosphatase UniProtKB/Swiss-Prot: PPBT_HUMAN, P05186 Similarity : Belongs to the alkaline phosphatase family
Gene Function for ALPL
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000478 Applied Biosystems Silencer ® siRNAs for ALPL Sigma-Aldrich siRNA and siRNA Panels for ALPL Sigma-Aldrich shRNA for ALPL Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000478                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000478                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_000478  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001127501 UniProtKB/Swiss-Prot: PPBT_HUMAN, P05186 Function : This isozyme may play a role in skeletal mineralizationCatalytic activity : A phosphate monoester + H(2)O = an alcohol + phosphateEnzyme Number (IUBMB): EC 3.1.3.1
Genatlas biochemistry entry for ALPL :phosphatase alkaline,liver/bone/kidney,non specific
15/17 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Alpl) (see all 17
):4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for ALPL
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for ALPL (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for ALPL 5/77 Interacting proteins for ALPL (ENSP00000363965 3 ) via UniProtKB, MINT, and/or STRING (see all 77
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for ALPL (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ALPL 8 Novoseek chemical compound relationships for ALPL gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
phosphoethanolamine
80.41
8
7706447 (3), 17539739 (1), 9814474 (1), 16205618 (1)
pyrophosphate
75.92
17
17906411 (3), 16546821 (2), 17241478 (1), 12162492 (1) (see all 9 )
alizarin
53.63
3
19302812 (1), 18027839 (1)
phenylalanine
17.59
1
18422967 (1)
oligonucleotide
14.30
2
10502677 (1), 9914325 (1)
calcium
9.15
9
9403706 (2), 12944372 (1), 11395499 (1), 17669706 (1)
sucrose
0.00
2
10839996 (1), 18422967 (1)
histidine
0.00
1
10502677 (1)
About this table
Transcripts for ALPL(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000478 Sigma-Aldrich siRNA and siRNA Panels for ALPL Sigma-Aldrich shRNA for ALPL Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000478 NM_001127501
REFSEQ mRNAs for ALPL gene (2 alternative transcripts): NM_000478.3 NM_001127501.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000478 NM_001127501
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000478                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000478                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_000478  
Additional cDNA sequence: AB011406.1 AB012643.1 AB209814.1 AK097413.1 AK293184.1 AK295608.1 AK298085.1 AK312667.1 BC021289.2 BC066116.1 BC090861.1 BC110909.1 BC126165.1 BC136325.1 S76738.1
10 DOTS entries : DT.91783068 DT.97803014 DT.95278667 DT.95278658 DT.95278671 DT.121436718 DT.91783108 DT.121436683 DT.99963505 DT.121436696
24/142 AceView cDNA sequences (see all 142
):X95994 BE466536 BF850182 BQ636503 Y07598 R72822 BF849501 BQ636473 BF849484 S76738 BC021289 AI968129 BX956183 BI818885 BQ639223 BQ056305 AK097413 BC066116 AU141847 BQ896667 CK904725 BI554198 AU127665 AV692891
highest scoring ESTs for ALPL :AB011406 AB012643 BC021289 BC066116 BI554198 X14174 AA203177 AA219602 AA689343 AA761076
Unigene Cluster for ALPL: Alkaline phosphatase, liver/bone/kidney Hs.75431 [show with all ESTs ] Unigene Representative Sequence: NM_000478 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for ALPL ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15a · 15b · 15c SP1 :   -     -                     -   -             SP2 :                         -   -   -             SP3 :                                         SP4 :                             -             SP5 :                                        
About this scheme ECgene alternative splicing isoforms for ALPL 4 Ensembl transcripts including schematic representations : ENST00000374840
ENST00000374829
ENST00000374832
ENST00000374830
Expression for ALPL
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ALPL expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ALPL 1 / 2 / 3
4 probe-sets matching ALPL gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TCCCTGTCCCSOURCE GeneReport for Unigene cluster: Hs.75431 Expression variation in blood from EXPOLDB for ALPL
Orthologs for ALPL
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ALPL gene from 5/10 species (see all 10
)
About this table Species with no ortholog for ALPL ENSEMBL Gene Tree for ALPL Paralogs for ALPL (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ALPL gene ALPPL2 2 ALPP 2 ALPI 2
SNPs/Variants for ALPL (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ALPL (up to first 250kb)
Disorders & Mutations for ALPL
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 171760 disorders : 241500 241510 146300 UniProtKB/Swiss-Prot: PPBT_HUMAN, P05186
Defects in ALPL are a cause of hypophosphatasia infantile (hypophosphatasia) [MIM:241500];an inherited metabolic bone disease characterized by defective skeletal mineralization. Fourhypophosphatasia forms are distinguished, depending on the age of onset: perinatal, infantile,childhood and adult type. The perinatal form is the most severe and is almost always fatal.Patients with only premature loss of deciduous teeth, but with no bone disease are regarded ashaving odontohypophosphatasia (odonto) Defects in ALPL are a cause of hypophosphatasia childhood (hypophosphatasia) [MIM:241510] Defects in ALPL are a cause of hypophosphatasia adult type (hypophosphatasia) [MIM:146300]
10/22 Novoseek disease relationships for ALPL gene (see all 22
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
hypophosphatasia
98.92
205
9403706 (5), 1409720 (4), 1360878 (4), 10737975 (3) (see all 84 )
hypophosphatasia, childhood
95.81
5
12638946 (1), 15671102 (1), 9781036 (1), 10495141 (1)
hypophosphatasia, infantile
95.37
10
16769381 (2), 10834525 (1), 8096553 (1), 17395561 (1) (see all 8 )
hypophosphatasia, mild
85.54
2
10679946 (1)
anaplastic meningioma
70.85
2
9432670 (1), 9258258 (1)
rickets
62.52
5
11547844 (1), 12674323 (1), 17395561 (1), 9403706 (1)
osteomalacia
62.52
3
16815919 (1), 9403706 (1)
skeletal disorder
60.33
8
17539739 (1), 8060771 (1), 18724009 (1), 15824850 (1)
cleidocranial dysplasia
49.64
1
12424591 (1)
meningioma
46.27
13
9258258 (3), 10589773 (3), 9432670 (1), 16040297 (1) (see all 5 )
About this table GeneTests: ALPL Hypophosphatasia Human Gene Mutation Database : ALPL Genetic Association Database: ALPL Human Genome Epidemiology Navigator: ALPL (10 documents)
Medical News for ALPL (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ALPL (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/204 PubMed articles for ALPL gene (see all 204
): Severe hypercalcaemia and respiratory insufficiency associated with infantile hypophosphatasia caused by two novel mutations of the tissue-nonspecific alkaline phosphatase gene. (PubMed id 10834525) 1, 3, 4, 6 Mochizuki H.... Ozono K. (2000) Isolation and characterization of a cDNA encoding a human liver/bone/kidney-type alkaline phosphatase. (PubMed id 3532105) 2, 3, 4 Weiss M.J....Harris H. (1986) Functional analysis of the single nucleotide polymorphism (787T>C) in the tissue-nonspecific alkaline phosphatase gene associated with BMD. (PubMed id 15824850) 1, 3, 6 Goseki-Sone M....Hosoi T. (2005) Denaturing gradient gel electrophoresis analysis of the tissue nonspecific alkaline phosphatase isoenzyme gene in hypophosphatasia. (PubMed id 11855933) 1, 3, 4 Mumm S....Whyte M.P. (2002) Perinatal hypophosphatasia: radiology, pathology and molecular biology studies in a family harboring a splicing mutation (648+1A) and a novel missense mutation (N400S) in the tissue-nonspecific alkaline phosphatase (TNSALP) gene. (PubMed id 11745997) 1, 3, 4 Sergi C.... Voigtlaender T. (2001) A novel point mutation (C571T) in the tissue-non-specific alkaline phosphatase gene in a case of adult-type hypophosphatasia. (PubMed id 11834095) 1, 3, 4 Watanabe H....Ishikawa I. (2001) Identification of fifteen novel mutations in the tissue-nonspecific alkaline phosphatase (TNSALP) gene in European patients with severe hypophosphatasia. (PubMed id 9781036) 1, 3, 4 Mornet E.... Simon-Bouy B. (1998) Different missense mutations at the tissue-nonspecific alkaline phosphatase gene locus in autosomal recessively inherited forms of mild and severe hypophosphatasia. (PubMed id 1409720) 1, 3, 4 Henthorn P.S.... Whyte M.P. (1992) Twelve novel mutations in the tissue-nonspecific alkaline phosphatase gene (ALPL) in patients with various forms of hypophosphatasia. (PubMed id 11438998) 1, 3, 4 Taillandier A.... Mornet E. (2001) Fifteen new mutations (-195C>T, L-12X, 298-2A>G, T117N, A159T, R229S, 997+2T>A, E274X, A331T, H364R, D389G, 1256delC, R433H, N461I, C472S) in the tissue-nonspecific alkaline phosphatase (TNSALP) gene in patients with hypophosphatasia. (PubMed id 10679946) 1, 3, 4 Taillandier A.... Mornet E. (2000)
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Genome Databases showing ALPL
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ALPL
(According to HUGE )
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Specialized Databases showing ALPL (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
ATLAS Chromosomes in Cancer entry for ALPL Genetics and Cytogenetics in Oncology and Haematology ALPL http://www.sesep.uvsq.fr/Database.html GeneReviews http://www.genetests.org/query?gene=ALPL Wikipedia http://en.wikipedia.org/wiki/Alkaline_phosphatase
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-- Services for ALPL (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for ALPL:
Search Tocris compounds for ALPL
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009