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Aliases for ALPK3 Gene

Aliases for ALPK3 Gene

  • Alpha Kinase 3 2 3 5
  • Myocyte Induction Differentiation Originator 2 3
  • Muscle Alpha-Protein Kinase 3 4
  • Muscle Alpha-Kinase 2 3
  • MAK 3 4
  • Alpha-Protein Kinase 3 3
  • EC 2.7.11.- 4
  • KIAA1330 4
  • MIDORI 3

External Ids for ALPK3 Gene

Previous GeneCards Identifiers for ALPK3 Gene

  • GC15P083161
  • GC15P085359
  • GC15P061446

Summaries for ALPK3 Gene

GeneCards Summary for ALPK3 Gene

ALPK3 (Alpha Kinase 3) is a Protein Coding gene. GO annotations related to this gene include transferase activity, transferring phosphorus-containing groups and protein serine/threonine kinase activity. An important paralog of this gene is ALPK2.

UniProtKB/Swiss-Prot for ALPK3 Gene

  • Kinase that recognizes phosphorylation sites in which the surrounding peptides have an alpha-helical conformation. Plays a role in cardiomyocyte differentiation (By similarity).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALPK3 Gene

Genomics for ALPK3 Gene

Regulatory Elements for ALPK3 Gene

Enhancers for ALPK3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F084766 0.5 ENCODE 25.3 -49.9 -49899 0.2 ZNF366 MAX PRDM1 ZKSCAN1 ALPK3 SEC11A NMB WDR73 ENSG00000200991 ENSG00000259415 PIR36328
GH15F084833 1 Ensembl ENCODE 22.4 +21.3 21277 10.4 HDGF ATF1 PKNOX1 ARID4B SIN3A GLI4 FEZF1 ZNF2 YY1 GLIS2 NMB ALPK3 WDR73 ZNF592 GOLGA6L5P GOLGA6L4 LINC00933 CSPG4P11 SCAND2P ENSG00000259683
GH15F084816 1.2 FANTOM5 Ensembl ENCODE 17.9 +4.7 4728 9.6 ELF3 HDGF HDAC1 PKNOX1 ARNT ARID4B DMAP1 ZSCAN9 ZBTB40 RAD21 WDR73 ZNF592 ALPK3 NMB GOLGA6L5P ENSG00000200991 SLC28A1 GOLGA6L3 SEC11A ENSG00000259683
GH15F084827 0.7 Ensembl ENCODE 17.8 +12.0 11966 2.3 HLF NRF1 BHLHE40 ZIC2 FOXK2 ZNF366 EMSY MGA GOLGA6L4 ALPK3 ENSG00000200991 ZNF592 GC15P084852
GH15F084733 0.6 Ensembl ENCODE 16.6 -81.4 -81364 4.2 HDGF PKNOX1 ARNT CREB3L1 SIN3A ZNF2 ZNF207 FOS ZNF263 SP3 NMB ALPK3 WDR73 GOLGA6L5P DNM1P51 EFTUD1P1 RN7SL331P ENSG00000259683 UBE2Q2P1 GC15P084731
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ALPK3 on UCSC Golden Path with GeneCards custom track

Promoters for ALPK3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000412701 720 1201 CTCF RAD51 CBX5 POLR2A ZBED1

Genomic Location for ALPK3 Gene

Chromosome:
15
Start:
84,816,680 bp from pter
End:
84,873,482 bp from pter
Size:
56,803 bases
Orientation:
Plus strand

Genomic View for ALPK3 Gene

Genes around ALPK3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALPK3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALPK3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALPK3 Gene

Proteins for ALPK3 Gene

  • Protein details for ALPK3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96L96-ALPK3_HUMAN
    Recommended name:
    Alpha-protein kinase 3
    Protein Accession:
    Q96L96
    Secondary Accessions:
    • Q9P2L6

    Protein attributes for ALPK3 Gene

    Size:
    1907 amino acids
    Molecular mass:
    201272 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ALPK3 Gene

Post-translational modifications for ALPK3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ALPK3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ALPK3 Gene

Domains & Families for ALPK3 Gene

Suggested Antigen Peptide Sequences for ALPK3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96L96

UniProtKB/Swiss-Prot:

ALPK3_HUMAN :
  • Contains 1 alpha-type protein kinase domain.
  • Belongs to the protein kinase superfamily. Alpha-type protein kinase family. ALPK subfamily.
Domain:
  • Contains 1 alpha-type protein kinase domain.
  • Contains 2 Ig-like (immunoglobulin-like) domains.
Family:
  • Belongs to the protein kinase superfamily. Alpha-type protein kinase family. ALPK subfamily.
genes like me logo Genes that share domains with ALPK3: view

Function for ALPK3 Gene

Molecular function for ALPK3 Gene

UniProtKB/Swiss-Prot Function:
Kinase that recognizes phosphorylation sites in which the surrounding peptides have an alpha-helical conformation. Plays a role in cardiomyocyte differentiation (By similarity).

Enzyme Numbers (IUBMB) for ALPK3 Gene

Gene Ontology (GO) - Molecular Function for ALPK3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004674 protein serine/threonine kinase activity IEA --
GO:0005524 ATP binding IEA --
GO:0016301 kinase activity IEA --
GO:0016740 transferase activity IEA --
genes like me logo Genes that share ontologies with ALPK3: view
genes like me logo Genes that share phenotypes with ALPK3: view

Animal Models for ALPK3 Gene

MGI Knock Outs for ALPK3:

Animal Model Products

  • Taconic Biosciences Mouse Models for ALPK3

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ALPK3 Gene

Localization for ALPK3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ALPK3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ALPK3 Gene COMPARTMENTS Subcellular localization image for ALPK3 gene
Compartment Confidence
nucleus 5
cytosol 2
peroxisome 1

Gene Ontology (GO) - Cellular Components for ALPK3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA,ISS --
genes like me logo Genes that share ontologies with ALPK3: view

Pathways & Interactions for ALPK3 Gene

SuperPathways for ALPK3 Gene

No Data Available

Interacting Proteins for ALPK3 Gene

Selected Interacting proteins: Q96L96-ALPK3_HUMAN for ALPK3 Gene via IID

Gene Ontology (GO) - Biological Process for ALPK3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006468 protein phosphorylation IEA --
GO:0007275 multicellular organism development IEA --
GO:0007507 heart development ISS --
GO:0016310 phosphorylation IEA --
genes like me logo Genes that share ontologies with ALPK3: view

No data available for Pathways by source and SIGNOR curated interactions for ALPK3 Gene

Transcripts for ALPK3 Gene

mRNA/cDNA for ALPK3 Gene

Unigene Clusters for ALPK3 Gene

Alpha-kinase 3:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ALPK3 Gene

No ASD Table

Relevant External Links for ALPK3 Gene

GeneLoc Exon Structure for
ALPK3
ECgene alternative splicing isoforms for
ALPK3

Expression for ALPK3 Gene

mRNA expression in normal human tissues for ALPK3 Gene

mRNA differential expression in normal tissues according to GTEx for ALPK3 Gene

This gene is overexpressed in Muscle - Skeletal (x19.3) and Heart - Left Ventricle (x7.5).

Protein differential expression in normal tissues from HIPED for ALPK3 Gene

This gene is overexpressed in Cervix (62.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ALPK3 Gene



Protein tissue co-expression partners for ALPK3 Gene

NURSA nuclear receptor signaling pathways regulating expression of ALPK3 Gene:

ALPK3

SOURCE GeneReport for Unigene cluster for ALPK3 Gene:

Hs.459183
genes like me logo Genes that share expression patterns with ALPK3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for ALPK3 Gene

Orthologs for ALPK3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ALPK3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ALPK3 34 35
  • 96.44 (n)
dog
(Canis familiaris)
Mammalia ALPK3 34 35
  • 83.18 (n)
cow
(Bos Taurus)
Mammalia ALPK3 34 35
  • 81.23 (n)
rat
(Rattus norvegicus)
Mammalia Alpk3 34
  • 79.84 (n)
mouse
(Mus musculus)
Mammalia Alpk3 34 16 35
  • 79.18 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia ALPK3 35
  • 70 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ALPK3 35
  • 55 (a)
OneToOne
chicken
(Gallus gallus)
Aves ALPK3 35
  • 39 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ALPK3 35
  • 38 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii alpk3a 35
  • 27 (a)
OneToMany
BX001033.2 35
  • 20 (a)
OneToMany
Species where no ortholog for ALPK3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ALPK3 Gene

ENSEMBL:
Gene Tree for ALPK3 (if available)
TreeFam:
Gene Tree for ALPK3 (if available)

Paralogs for ALPK3 Gene

Paralogs for ALPK3 Gene

genes like me logo Genes that share paralogs with ALPK3: view

Variants for ALPK3 Gene

Sequence variations from dbSNP and Humsavar for ALPK3 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
VAR_041526 A lung large cell carcinoma sample
VAR_041531 A metastatic melanoma sample
rs10625181 -- 84,838,600(+) CTCCC(-/ATT/ATTATTATT)ATTAT intron-variant
rs10775243 -- 84,833,530(+) CCTCT(C/G)TGTGA intron-variant
rs10852091 -- 84,838,704(+) AACCT(C/T)GGACT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ALPK3 Gene

Variant ID Type Subtype PubMed ID
dgv322n27 CNV gain 19166990
dgv4690n54 CNV gain 21841781
esv2672879 CNV deletion 23128226
esv2760049 CNV loss 17122850
esv3637099 CNV gain 21293372
nsv471257 CNV gain 18288195
nsv524050 CNV loss 19592680

Variation tolerance for ALPK3 Gene

Residual Variation Intolerance Score: 39% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.55; 91.19% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ALPK3 Gene

Human Gene Mutation Database (HGMD)
ALPK3
SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALPK3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ALPK3 Gene

Disorders for ALPK3 Gene

Relevant External Links for ALPK3

Genetic Association Database (GAD)
ALPK3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ALPK3

No disorders were found for ALPK3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALPK3 Gene

Publications for ALPK3 Gene

  1. Alpha-kinases: a new class of protein kinases with a novel catalytic domain. (PMID: 10021370) Ryazanov A.G. … Dorovkov M.V. (Curr. Biol. 1999) 2 3 4 64
  2. Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10718198) Nagase T. … Ohara O. (DNA Res. 2000) 3 4 64
  3. Biallelic Truncating Mutations in ALPK3 Cause Severe Pediatric Cardiomyopathy. (PMID: 26846950) Almomani R. … van de Laar I.M. (J. Am. Coll. Cardiol. 2016) 3 64
  4. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low S.K. … Nakamura Y. (Cancer Sci. 2013) 3 64
  5. Genome-wide association analysis of age-at-onset in Alzheimer's disease. (PMID: 22005931) Kamboh M.I. … Lopez O.L. (Mol. Psychiatry 2012) 3 64

Products for ALPK3 Gene

Sources for ALPK3 Gene

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