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Aliases for ALPK3 Gene

Aliases for ALPK3 Gene

  • Alpha Kinase 3 2 3 5
  • Myocyte Induction Differentiation Originator 2 3
  • Muscle Alpha-Protein Kinase 3 4
  • Muscle Alpha-Kinase 2 3
  • MAK 3 4
  • Alpha-Protein Kinase 3 3
  • EC 2.7.11.- 4
  • KIAA1330 4
  • MIDORI 3

External Ids for ALPK3 Gene

Previous GeneCards Identifiers for ALPK3 Gene

  • GC15P083161
  • GC15P085359
  • GC15P061446

Summaries for ALPK3 Gene

GeneCards Summary for ALPK3 Gene

ALPK3 (Alpha Kinase 3) is a Protein Coding gene. GO annotations related to this gene include transferase activity, transferring phosphorus-containing groups and protein serine/threonine kinase activity. An important paralog of this gene is ALPK2.

UniProtKB/Swiss-Prot for ALPK3 Gene

  • Kinase that recognizes phosphorylation sites in which the surrounding peptides have an alpha-helical conformation. Plays a role in cardiomyocyte differentiation (By similarity).

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALPK3 Gene

Genomics for ALPK3 Gene

Regulatory Elements for ALPK3 Gene

Enhancers for ALPK3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G084832 1.6 Ensembl ENCODE dbSUPER 22.4 +21.3 21277 10.4 HDGF PKNOX1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF143 ZNF207 FOS NMB ALPK3 ZNF592 GOLGA6L5P GOLGA6L4 LINC00933 CSPG4P11 WDR73 SCAND2P ENSG00000259683
GH15G084816 1.8 FANTOM5 Ensembl ENCODE dbSUPER 17.9 +4.7 4728 9.6 HDGF PKNOX1 FOXA2 CREB3L1 ARNT ARID4B DMAP1 YY1 SLC30A9 CBX5 WDR73 ZNF592 ALPK3 NMB GOLGA6L5P ENSG00000200991 SLC28A1 GOLGA6L3 SEC11A ENSG00000259683
GH15G084786 1 dbSUPER 27 -27.0 -26996 5.7 ZFP64 ARID4B SIN3A DMAP1 ZNF48 YY1 CBX5 ELK1 ZNF143 DEK NMB GOLGA6L5P WDR73 GOLGA6L4 ALPK3 LINC00933 GOLGA6L3 LOC103171574 UBE2Q2P1 SEC11A
GH15G084733 1.6 Ensembl ENCODE dbSUPER 16.6 -81.3 -81287 4.1 HDGF PKNOX1 CREB3L1 ARNT SIN3A ZNF2 ZNF143 ZNF207 FOS ZNF263 NMB ALPK3 WDR73 GOLGA6L5P RN7SL331P ENSG00000259683 UBE2Q2P1 GC15P084731 GC15P084740
GH15G084714 1.4 ENCODE dbSUPER 15.9 -100.7 -100719 3.4 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF548 SP3 NFYC TBX21 NMB ALPK3 ENSG00000259683 GOLGA6L3 GOLGA6L5P DNM1P51 CSPG4P12 UBE2Q2L WDR73 LOC103171574
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ALPK3 on UCSC Golden Path with GeneCards custom track

Promoters for ALPK3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000080458 720 401 CTCF POLR2A RBBP5

Genomic Location for ALPK3 Gene

Chromosome:
15
Start:
84,816,680 bp from pter
End:
84,873,482 bp from pter
Size:
56,803 bases
Orientation:
Plus strand

Genomic View for ALPK3 Gene

Genes around ALPK3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALPK3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALPK3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALPK3 Gene

Proteins for ALPK3 Gene

  • Protein details for ALPK3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96L96-ALPK3_HUMAN
    Recommended name:
    Alpha-protein kinase 3
    Protein Accession:
    Q96L96
    Secondary Accessions:
    • Q9P2L6

    Protein attributes for ALPK3 Gene

    Size:
    1907 amino acids
    Molecular mass:
    201272 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ALPK3 Gene

Post-translational modifications for ALPK3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ALPK3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ALPK3 Gene

Domains & Families for ALPK3 Gene

Suggested Antigen Peptide Sequences for ALPK3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96L96

UniProtKB/Swiss-Prot:

ALPK3_HUMAN :
  • Belongs to the protein kinase superfamily. Alpha-type protein kinase family. ALPK subfamily.
Family:
  • Belongs to the protein kinase superfamily. Alpha-type protein kinase family. ALPK subfamily.
genes like me logo Genes that share domains with ALPK3: view

Function for ALPK3 Gene

Molecular function for ALPK3 Gene

UniProtKB/Swiss-Prot Function:
Kinase that recognizes phosphorylation sites in which the surrounding peptides have an alpha-helical conformation. Plays a role in cardiomyocyte differentiation (By similarity).

Enzyme Numbers (IUBMB) for ALPK3 Gene

Gene Ontology (GO) - Molecular Function for ALPK3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004674 protein serine/threonine kinase activity IEA --
GO:0005524 ATP binding IEA --
GO:0016301 kinase activity IEA --
GO:0016740 transferase activity IEA --
genes like me logo Genes that share ontologies with ALPK3: view
genes like me logo Genes that share phenotypes with ALPK3: view

Animal Models for ALPK3 Gene

MGI Knock Outs for ALPK3:

Animal Model Products

  • Taconic Biosciences Mouse Models for ALPK3

Inhibitory RNA Products

Clone Products

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ALPK3 Gene

Localization for ALPK3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ALPK3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ALPK3 gene
Compartment Confidence
nucleus 5
cytosol 2
peroxisome 1

Gene Ontology (GO) - Cellular Components for ALPK3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA,ISS --
genes like me logo Genes that share ontologies with ALPK3: view

Pathways & Interactions for ALPK3 Gene

SuperPathways for ALPK3 Gene

No Data Available

Interacting Proteins for ALPK3 Gene

Selected Interacting proteins: Q96L96-ALPK3_HUMAN for ALPK3 Gene via IID

Gene Ontology (GO) - Biological Process for ALPK3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006468 protein phosphorylation IEA --
GO:0007275 multicellular organism development IEA --
GO:0007507 heart development ISS --
GO:0016310 phosphorylation IEA --
genes like me logo Genes that share ontologies with ALPK3: view

No data available for Pathways by source and SIGNOR curated interactions for ALPK3 Gene

Drugs & Compounds for ALPK3 Gene

No Compound Related Data Available

Transcripts for ALPK3 Gene

mRNA/cDNA for ALPK3 Gene

Unigene Clusters for ALPK3 Gene

Alpha-kinase 3:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ALPK3 Gene

No ASD Table

Relevant External Links for ALPK3 Gene

GeneLoc Exon Structure for
ALPK3
ECgene alternative splicing isoforms for
ALPK3

Expression for ALPK3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ALPK3 Gene

mRNA differential expression in normal tissues according to GTEx for ALPK3 Gene

This gene is overexpressed in Muscle - Skeletal (x19.3) and Heart - Left Ventricle (x7.5).

Protein differential expression in normal tissues from HIPED for ALPK3 Gene

This gene is overexpressed in Cervix (62.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ALPK3 Gene



Protein tissue co-expression partners for ALPK3 Gene

NURSA nuclear receptor signaling pathways regulating expression of ALPK3 Gene:

ALPK3

SOURCE GeneReport for Unigene cluster for ALPK3 Gene:

Hs.459183

Evidence on tissue expression from TISSUES for ALPK3 Gene

  • Nervous system(4.2)
  • Muscle(3.2)
  • Heart(2.5)
genes like me logo Genes that share expression patterns with ALPK3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALPK3 Gene

Orthologs for ALPK3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ALPK3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ALPK3 34 35
  • 96.44 (n)
dog
(Canis familiaris)
Mammalia ALPK3 34 35
  • 83.18 (n)
cow
(Bos Taurus)
Mammalia ALPK3 34 35
  • 81.23 (n)
rat
(Rattus norvegicus)
Mammalia Alpk3 34
  • 79.84 (n)
mouse
(Mus musculus)
Mammalia Alpk3 34 16 35
  • 79.18 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia ALPK3 35
  • 70 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ALPK3 35
  • 55 (a)
OneToOne
chicken
(Gallus gallus)
Aves ALPK3 35
  • 39 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ALPK3 35
  • 38 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii alpk3a 35
  • 27 (a)
OneToMany
BX001033.2 35
  • 20 (a)
OneToMany
Species where no ortholog for ALPK3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ALPK3 Gene

ENSEMBL:
Gene Tree for ALPK3 (if available)
TreeFam:
Gene Tree for ALPK3 (if available)

Paralogs for ALPK3 Gene

Paralogs for ALPK3 Gene

genes like me logo Genes that share paralogs with ALPK3: view

Variants for ALPK3 Gene

Sequence variations from dbSNP and Humsavar for ALPK3 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
VAR_041526 A lung large cell carcinoma sample
VAR_041531 A metastatic melanoma sample
rs1057518517 Uncertain significance 84,823,341(+) AAGCA(A/C)CCGGT intron-variant, reference, missense
rs1000019396 -- 84,842,314(+) CAGGC(A/G)TGAGC intron-variant
rs1000055778 -- 84,871,149(+) GGTAA(A/C)GTCTA utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for ALPK3 Gene

Variant ID Type Subtype PubMed ID
dgv322n27 CNV gain 19166990
dgv4690n54 CNV gain 21841781
esv2672879 CNV deletion 23128226
esv2760049 CNV loss 17122850
esv3637099 CNV gain 21293372
nsv471257 CNV gain 18288195
nsv524050 CNV loss 19592680

Variation tolerance for ALPK3 Gene

Residual Variation Intolerance Score: 39% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.55; 91.19% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ALPK3 Gene

Human Gene Mutation Database (HGMD)
ALPK3
SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALPK3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ALPK3 Gene

Disorders for ALPK3 Gene

Relevant External Links for ALPK3

Genetic Association Database (GAD)
ALPK3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ALPK3

No disorders were found for ALPK3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALPK3 Gene

Publications for ALPK3 Gene

  1. Alpha-kinases: a new class of protein kinases with a novel catalytic domain. (PMID: 10021370) Ryazanov A.G. … Dorovkov M.V. (Curr. Biol. 1999) 2 3 4 64
  2. Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10718198) Nagase T. … Ohara O. (DNA Res. 2000) 3 4 64
  3. A Potential Oligogenic Etiology of Hypertrophic Cardiomyopathy: A Classic Single-Gene Disorder. (PMID: 28223422) Li L. … Marian A.J. (Circ. Res. 2017) 3 64
  4. Exome-wide association study reveals novel susceptibility genes to sporadic dilated cardiomyopathy. (PMID: 28296976) Esslinger U. … Villard E. (PLoS ONE 2017) 3 64
  5. Biallelic Truncating Mutations in ALPK3 Cause Severe Pediatric Cardiomyopathy. (PMID: 26846950) Almomani R. … van de Laar I.M. (J. Am. Coll. Cardiol. 2016) 3 64

Products for ALPK3 Gene

Sources for ALPK3 Gene

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