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ALOXE3 Gene

protein-coding   GIFtS: 57

GC17M007939
arachidonate lipoxygenase 3
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
E-LOX 1, 2
EC 1.13.11.- 3
MGC119694 2
MGC119695 2
MGC119696 2
e-LOX-3 3
eLOX3 1, 2
lipoxygenase-3 2
Descriptions
arachidonate lipoxygenase 3 2
epidermal lipoxygenase 2
External Ids
HGNC: 137431
Entrez Gene: 593442
UniProtKB: Q9BYJ13
Ensembl: ENSG000001791487
Search outside databases for aliases for ALOXE3 gene

Previous GC identifers: GC17P008434 GC17M009087 GC17M007941 GC17M008199

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for ALOXE3:
The leukotrienes constitute a group of arachidonic acid-derived compounds with biologic activities
suggesting important roles in inflammation and immediate hypersensitivity. These compounds are
catabolized, in part, by lipoxygenases. Epidermis-type lipoxygenases, a distinct subclass within
the multigene family of mammalian lipoxygenases, are novel isoenzymes isolated from human and
mouse skin including human ALOX15B (MIM 603697), human and mouse ALOX12B (MIM 603741), mouse
8S-LOX, and mouse e-LOX-3.[supplied by OMIM]

UniProtKB/Swiss-Prot: LOXE3_HUMAN, Q9BYJ1
Function: Introduces molecular oxygen into polyunsaturated fatty acids. Exact substrate is not
known

Gene Wiki entry for ALOXE3

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the ALOXE3 gene  

Entrez Gene cytogenetic band: 17p13.1   Ensembl cytogenetic band:  17p13.1   HGNC cytogenetic band: 17p13.1

ALOXE3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M007939:     (about GC identifiers)

Start:
7,939,943 bp from pter
End:
7,962,532 bp from pter
Size:
22,590 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000017.9  NT_010718.15  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: LOXE3_HUMAN, Q9BYJ1 (See protein sequence)
Recommended Name: Epidermis-type lipoxygenase 3  
Size: 711 amino acids; 80543 Da
Cofactor: Binds 1 iron ion per subunit (By similarity)
Secondary accessions: B2R981 Q3ZB74 Q9H4F2 Q9HC22

REFSEQ proteins: NP_067641.2  

ENSEMBL proteins: 
ENSP00000369494 ENSP00000314879 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (ALOXE3)
Human Recombinant Proteins from Abnova (ALOXE3)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 


Antibodies for ALOXE3: 
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Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Browse Antibodies at Sigma-Aldrich
Browse R&D Systems for Antibodies
Antibodies from Abcam (ALOXE3), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (ALOXE3)
Novus Biologicals Antibodies for ALOXE3

Assays for ALOXE3: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

4 InterPro domains/families:
 IPR013819 LipOase_C
 IPR001024 LipOase_LH2
 IPR000907 LipOase
 IPR001885 LipOase_mml


   GeneDecks  ALOXE3 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry Q9BYJ1

ProtoNet protein and cluster: Q9BYJ1

3 Blocks protein families:
IPB000907 Lipoxygenase
IPB001024 Lipoxygenase
IPB001885 Mammalian lipoxygenase signature


UniProtKB/Swiss-Prot: LOXE3_HUMAN, Q9BYJ1
Similarity: Belongs to the lipoxygenase family
Similarity: Contains 1 lipoxygenase domain
Similarity: Contains 1 PLAT domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (ALOXE3)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (ALOXE3)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_021628

              Applied Biosystems Silencer® siRNAs for ALOXE3

              Sigma-Aldrich siRNA and siRNA Panels for ALOXE3  
                     Sigma-Aldrich shRNA for ALOXE3  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for ALOXE3
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_021628
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_021628
                                 untagged cDNA clone in CMV expression vector: NM_021628 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_021628

UniProtKB/Swiss-Prot: LOXE3_HUMAN, Q9BYJ1
Function: Introduces molecular oxygen into polyunsaturated fatty acids. Exact substrate is not
known
Enzyme Number (IUBMB): EC 1.13.11.- 

4 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005506 iron ion binding IEA--
GO:0016165 lipoxygenase activity IEA--
GO:0016491 oxidoreductase activity IEA--
GO:0046872 metal ion binding IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Millipore Pathway for ALOXE3
 Prostaglandin 2 biosynthesis and metabolism FM

   GeneDecks  ALOXE3 for the pathways selected above  
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for  ALOXE3  (Your Favorite Gene powered by Ingenuity) 
 Inositol Metabolism
 Linoleic Acid Metabolism

   GeneDecks  ALOXE3 for the pathways selected above  
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UniProtKB/Swiss-Prot: LOXE3_HUMAN, Q9BYJ1
Pathway: Lipid metabolism; leukotriene D4 biosynthesis


5 Interacting proteins for ALOXE3 (ENSP000003694943) via UniProtKB, MINT, and/or STRING

InteractantInteraction Details
GeneCardExternal ID(s)
LOXENSP000002310043STRING (score=.871)
HES7ENSP000003147743STRING (score=.868)
TGM1ENSP000002067653STRING (score=.795)
HES5ENSP000003677143STRING (score=.746)
--ENSP000003667933STRING (score=.865)
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2 Gene Ontology (GO) biological process terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0019370 leukotriene biosynthetic process IEA--
GO:0055114 oxidation reduction IEA--
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
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Enzo Life Sciences drugs & compounds for ALOXE3
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for ALOXE3
3 Novoseek chemical compound relationships for ALOXE3 gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
12(r)-hpete 98.11 4 15629692 (1), 18086569 (1), 17045234 (1)
arachidonic acid 57.30 5 10569809 (1), 17608720 (1), 17436029 (1)
lipid 13.15 1 18341575 (1)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (ALOXE3)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (ALOXE3)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_021628

              Sigma-Aldrich siRNA and siRNA Panels for ALOXE3  
                     Sigma-Aldrich shRNA for ALOXE3  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_021628  

REFSEQ mRNAs for ALOXE3 gene: 

NM_021628.2   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_021628  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_021628
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_021628
                                 untagged cDNA clone in CMV expression vector: NM_021628 

Additional cDNA sequence: 

AF182218.1 AJ269499.1 AK292732.1 AK296416.1 AK299742.1 AK313677.1 BC101938.1 BC101939.1 
BC103508.1 BC104724.1 

2 DOTS entries:

DT.101977866  DT.86840964 

14 AceView cDNA sequences:

BM714205 BM676593 AF182218 NM_021628 AJ269499 AW003512 AW613990 AW300461 
AK122822 AW593980 CD693403 BG959287 BQ300190 BQ367813 

highest scoring ESTs for ALOXE3:

AF182218 AJ269499 AK122822 AW300461 BG959287 BM676593 BM714205 BQ300190 BQ367813 CD693403 

Unigene Cluster for ALOXE3:

Arachidonate lipoxygenase 3
Hs.694602  [show with all ESTs]
Unigene Representative Sequence: AJ269499


GeneLoc Exon Structure

2 Alternative Splicing Database (ASD) splice patterns (SP) for ALOXE3

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16
SP1:                                                                                                            
SP2:                                                                                                            

About this scheme

ECgene alternative splicing isoforms for ALOXE3

2 Ensembl transcripts including schematic representations:
ENST00000380149  ENST00000318227  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

ALOXE3 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for ALOXE3

1 / 2 / 3

4 probe-sets matching ALOXE3 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

222383_s_at2, 3 U133-A 1 1.00 1.00 -- -- AW003512 0.40 1.00 0.76 1

207708_at2, 3 U133-A 1 1.00 1.00 -- -- NM_021628 0.60 1.00 0.82 1

222383_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

207708_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
About this table
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.694602

UniProtKB/Swiss-Prot: LOXE3_HUMAN, Q9BYJ1
Tissue specificity: Predominantly expressed in skin

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for ALOXE3 gene from 5/7 species (see all 7 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
ALOXE31   -- arachidonate lipoxygenase 3 88.75(n)
88.61(a)
489487  XM_546605.2  XP_546605.2 
cow
(Bos taurus)
ALOXE31   -- arachidonate lipoxygenase 3 89.08(n)
89.31(a)
517001  XM_595164.3  XP_595164.3 
rat
(Rattus norvegicus)
Aloxe31   -- arachidonate lipoxygenase 3 85.79(n)
87.9(a)
287424  XM_213336.4  XP_213336.4 
mouse
(Mus musculus)
Aloxe31, 5 11 (37.00 cM)5
arachidonate lipoxygenase 31, 5 86.5(n)1
88.47(a)1
238011  NM_011786.11  NP_035916.11 
 AK1410035  AL6455275  (see all 9)
chicken
(Gallus gallus)
ALOXE31   -- arachidonate lipoxygenase 3 60.32(n)
52.38(a)
425997  XM_423676.2  XP_423676.2 
About this table        Species with no ortholog for ALOXE3

ENSEMBL Gene Tree for ALOXE3
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for ALOXE3 gene
ALOX52  ALOX12B2  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/179 NCBI SNPs in ALOXE3 are shown (see all 179 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 112)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 17 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs38098821,2
A,C,F,H7940314(-) TCCCCC/AATCCC 1 -- ut31 ese35Minor allele frequency- A:0.37EA EU WA 1904
rs30272321,2
A,C,F,H7962790(+) GCGCCG/AGCAAA 1 -- ng3110Minor allele frequency- A:0.41EU EA WA 1016
rs10019571,2
A,F,H7939629(-) GGAAGG/TCTCAG 1 -- ng515Minor allele frequency- T:0.00MN EU EA WA 596
rs10019581,2
A,F,H7939534(-) CCACAC/TGGAGA 1 -- ng515Minor allele frequency- T:0.45MN EU EA WA 536
rs14428471,2
A,C7963890(+) ATCAGC/TATGTT 1 -- ng310--------
--
rs97470631,2
A,C7963784(+) AAGACA/CCCACG 1 -- ng310--------
--
rs97481891,2
A,C7963868(+) accttA/GaAGCT 1 -- ng310--------
--
rs97470621,2
A,C7963782(+) GAAAGA/CCACCA 1 -- ng310--------
rs30272291,2
C7962333(+) ATCAGC/GAGCCT 1 -- ut51 ese30--------
rs80795651,2
H7939864(+) CACTGC/ATGCCC 1 -- ng514Minor allele frequency- A:0.00EU EA WA 420
About this table

HapMap Linkage Disequilibrium images for ALOXE3 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 607206   disorders: 242100  

UniProtKB/Swiss-Prot: LOXE3_HUMAN, Q9BYJ1

  • Defects in ALOXE3 are a cause of non-bullous congenital ichthyosiform erythroderma (NCIE)
    [MIM:242100]. NCIE is a non-bullous ichthyosis, a skin disorder characterized by abnormal
    cornification of the epidermis. Most affected individuals are born with a tight, shiny,
    translucent covering called collodion membrane. The collodion membrane subsequently evolves into
    generalized scaling and intense redness of the skin. Clinical features are milder than in lamellar
    ichthyoses and demonstrate a greater variability in the intensity of erythema, size and type of
    scales. In contrast to lamellar ichthyoses, scales are usually white, fine and powdery, and palms
    and soles are severely affected. Patients suffer from palmoplantar keratoderma, often with painful
    fissures, digital contractures, and loss of pulp volume
  • 3 Novoseek disease relationships for ALOXE3 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    congenital ichthyosis 93.36 2 17608720 (1), 17139268 (1)
    ichthyosiform erythroderma congenital 92.15 7 11773004 (2), 15629692 (1), 16116617 (1)
    ichthyosis 89.07 3 15629692 (1), 17436029 (1), 18341575 (1)
    About this table

    GeneTests: ALOXE3
    Autosomal Recessive Congenital Ichthyosis

    Human Gene Mutation Database: ALOXE3
    Human Genome Epidemiology Navigator: ALOXE3 (2 documents)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/24 PubMed articles for ALOXE3 gene (see all 24 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 59344 HGNC: 13743 AceView: ALOXE3 Ensembl:ENSG00000179148 euGenes: HUgn59344
    ECgene: ALOXE3 H-InvDB: ALOXE3
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    GeneReviewshttp://www.genetests.org/query?gene=ALOXE3
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for ALOXE3:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for ALOXE3 Browse antibodies at Sigma-Aldrich
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for ALOXE3 Browse small molecules at Sigma-Aldrich
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     Drugs for ALOXE3
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     Antibodies for ALOXE3

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