 |
 | Services
| |
 |
Aliases & Descriptions for ALOXE3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| E-LOX 1, 2 | | EC 1.13.11.- 3 | | MGC119694 2 | | MGC119695 2 | | MGC119696 2 | | e-LOX-3 3 | | eLOX3 1, 2 | | lipoxygenase-3 2 |
| | | Descriptions |
|---|
| arachidonate lipoxygenase 3 2 | | epidermal lipoxygenase 2 |
|
| | Search outside databases for aliases for ALOXE3 genePrevious GC identifers: GC17P008434 GC17M009087 GC17M007941 GC17M008199 |
Summaries for ALOXE3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ALOXE3: The leukotrienes constitute a group of arachidonic acid-derived compounds with biologic activities suggesting important roles in inflammation and immediate hypersensitivity. These compounds are catabolized, in part, by lipoxygenases. Epidermis-type lipoxygenases, a distinct subclass within the multigene family of mammalian lipoxygenases, are novel isoenzymes isolated from human and mouse skin including human ALOX15B (MIM 603697), human and mouse ALOX12B (MIM 603741), mouse 8S-LOX, and mouse e-LOX-3.[supplied by OMIM] UniProtKB/Swiss-Prot: LOXE3_HUMAN, Q9BYJ1Function: Introduces molecular oxygen into polyunsaturated fatty acids. Exact substrate is not knownGene Wiki entry for ALOXE3 |
Genomic Location for ALOXE3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ALOXE3 gene 
Entrez Gene cytogenetic band: 17p13.1 Ensembl cytogenetic band: 17p13.1 HGNC cytogenetic band: 17p13.1ALOXE3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure GeneLoc location for GC17M007939:
(about GC identifiers)
Start:
|
7,939,943 bp from pter |
End:
|
7,962,532 bp from pter |
Size:
|
22,590 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000017.9 NT_010718.15
| Proteins for ALOXE3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: LOXE3_HUMAN, Q9BYJ1 (See
protein sequence)Recommended Name: Epidermis-type lipoxygenase 3 Size: 711 amino acids; 80543 Da
Cofactor: Binds 1 iron ion per subunit (By similarity)
Secondary accessions: B2R981 Q3ZB74 Q9H4F2 Q9HC22REFSEQ proteins: NP_067641.2
ENSEMBL proteins: ENSP00000369494 ENSP00000314879
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
Antibodies for ALOXE3: Assays for ALOXE3: | Protein
Domains/ Families for ALOXE3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9BYJ1
ProtoNet protein and cluster: Q9BYJ1 3 Blocks protein families: IPB000907 Lipoxygenase IPB001024 Lipoxygenase IPB001885 Mammalian lipoxygenase signature
UniProtKB/Swiss-Prot: LOXE3_HUMAN, Q9BYJ1Similarity: Belongs to the lipoxygenase familySimilarity: Contains 1 lipoxygenase domainSimilarity: Contains 1 PLAT domain | Gene Function for ALOXE3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_021628
Applied Biosystems Silencer® siRNAs for ALOXE3
Sigma-Aldrich siRNA and siRNA Panels for ALOXE3  Sigma-Aldrich shRNA for ALOXE3  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_021628                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_021628                                  untagged cDNA clone in CMV expression vector: NM_021628 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_021628
UniProtKB/Swiss-Prot: LOXE3_HUMAN, Q9BYJ1Function: Introduces molecular oxygen into polyunsaturated fatty acids. Exact substrate is not knownEnzyme Number (IUBMB): EC 1.13.11.- 4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ALOXE3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for ALOXE3 (Your Favorite Gene powered by Ingenuity) 
UniProtKB/Swiss-Prot: LOXE3_HUMAN, Q9BYJ1Pathway: Lipid metabolism; leukotriene D4 biosynthesis 5 Interacting proteins for ALOXE3 (ENSP000003694943) via UniProtKB, MINT, and/or STRINGAbout this table
2 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0019370 | leukotriene biosynthetic process |
IEA | -- | | GO:0055114 | oxidation reduction |
IEA | -- | About this table
|
Drugs & Compounds for ALOXE3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for ALOXE3 |
Browse Tocris compounds for ALOXE3 3 Novoseek chemical compound relationships for ALOXE3 gene
About this table
|
Transcripts for ALOXE3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_021628
Sigma-Aldrich siRNA and siRNA Panels for ALOXE3  Sigma-Aldrich shRNA for ALOXE3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_021628 REFSEQ mRNAs for ALOXE3 gene: NM_021628.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_021628               OriGene GFP tagged cDNA clone in CMV expression vector: NM_021628                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_021628                                  untagged cDNA clone in CMV expression vector: NM_021628  Additional cDNA sequence: AF182218.1 AJ269499.1 AK292732.1 AK296416.1 AK299742.1 AK313677.1 BC101938.1 BC101939.1 BC103508.1 BC104724.1 2 DOTS entries: DT.101977866 DT.86840964 14 AceView cDNA sequences:BM714205 BM676593 AF182218 NM_021628 AJ269499 AW003512 AW613990 AW300461 AK122822 AW593980 CD693403 BG959287 BQ300190 BQ367813
highest scoring ESTs for ALOXE3:AF182218 AJ269499 AK122822 AW300461 BG959287 BM676593 BM714205 BQ300190 BQ367813 CD693403 Unigene Cluster for ALOXE3: Arachidonate lipoxygenase 3 Hs.694602 [show with all ESTs]Unigene Representative Sequence: AJ269499
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for ALOXE3
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ALOXE3
2 Ensembl transcripts including schematic representations: ENST00000380149
ENST00000318227
|
Expression for ALOXE3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ALOXE3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ALOXE3
1 / 2 / 3 4 probe-sets matching ALOXE3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.694602 UniProtKB/Swiss-Prot: LOXE3_HUMAN, Q9BYJ1Tissue specificity: Predominantly expressed in skin |
Orthologs for ALOXE3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ALOXE3 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for ALOXE3
ENSEMBL Gene Tree for ALOXE3 | Paralogs for ALOXE3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ALOXE3 gene
- ALOX52 ALOX12B2
|
SNPs/Variants for ALOXE3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ALOXE3 (up to first 250kb)
|
Disorders & Mutations for ALOXE3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 607206 disorders: 242100 UniProtKB/Swiss-Prot: LOXE3_HUMAN, Q9BYJ1
Defects in ALOXE3 are a cause of non-bullous congenital ichthyosiform erythroderma (NCIE) [MIM:242100]. NCIE is a non-bullous ichthyosis, a skin disorder characterized by abnormal cornification of the epidermis. Most affected individuals are born with a tight, shiny, translucent covering called collodion membrane. The collodion membrane subsequently evolves into generalized scaling and intense redness of the skin. Clinical features are milder than in lamellar ichthyoses and demonstrate a greater variability in the intensity of erythema, size and type of scales. In contrast to lamellar ichthyoses, scales are usually white, fine and powdery, and palms and soles are severely affected. Patients suffer from palmoplantar keratoderma, often with painful fissures, digital contractures, and loss of pulp volume3 Novoseek disease relationships for ALOXE3 gene
About this table
GeneTests: ALOXE3 Autosomal Recessive Congenital Ichthyosis Human Gene Mutation Database: ALOXE3 Human Genome Epidemiology Navigator: ALOXE3 (2 documents)
|
Medical News for ALOXE3(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ALOXE3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/24 PubMed articles for ALOXE3 gene (see all 24
):- Lipoxygenase-3 (ALOXE3) and 12(R)-lipoxygenase (ALOX12B) are mutated in non-bullous congenital ichthyosiform erythroderma (NCIE) linked to chromosome 17p13.1. (PubMed id 11773004)1, 3, 4 Jobard F.... Fischer J. (2002)
- A gene cluster encoding human epidermis-type lipoxygenases at chromosome 17p13.1: cloning, physical mapping, and expression. (PubMed id 11350124)1, 3, 4 Krieg P.... Fuerstenberger G. (2001)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
- Human and mouse eLOX3 have distinct substrate specificities: implications for their linkage with lipoxygenases in skin. (PubMed id 17045234)1, 3 Yu Z....Brash A.R. (2006)
- Mutations associated with a congenital form of ichthyosis (NCIE) inactivate the epidermal lipoxygenases 12R-LOX and eLOX3. (PubMed id 15629692)1, 3 Yu Z....Brash A.R. (2005)
- Epidermal lipoxygenase products of the hepoxilin pathway selectively activate the nuclear receptor PPARalpha. (PubMed id 17436029)1, 3 Yu Z....Brash A.R. (2007)
- Novel mutations in ALOX12B in patients with autosomal recessive congenital ichthyosis and evidence for genetic heterogeneity on chromosome 17p13. (PubMed id 17139268)1, 3 Lesueur F....Fischer J. (2007)
- Molecular analysis of 250 patients with autosomal recessive congenital ichthyosis: evidence for mutation hotspots in ALOXE3 and allelic heterogeneity in ALOX12B. (PubMed id 19131948)1, 3 Eckl K.M....Hennies H.C. (2009)
- Polymorphism in the IL18 gene and epithelial ovarian cancer in non-Hispanic white women. (PubMed id 19064572)3 Palmieri R.T.... . (2008)
|
Search for ALOXE3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ALOXE3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ALOXE3
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ALOXE3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| GeneReviews | http://www.genetests.org/query?gene=ALOXE3 |
|
| | | About This Section
| --
| Services for ALOXE3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ALOXE3:

 | |
 | | | | |
|
 |  |  |
| | | | Search Tocris compounds for ALOXE3 |
|
 |
 | | | |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|