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Aliases & Descriptions for ALOX15B
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases 15-LOX-2 1 , 2 , 3 15S-lipoxygenase 2 EC 1.13.11.33 3 OTTHUMP00000135321 2
Descriptions 15-lipoxygenase 2 3 arachidonate 15-lipoxygenase 2 2 arachidonate 15-lipoxygenase, second type 1 , 2 arachidonate 15-lipoxygenase, type B 2 arachidonate omega(6) lipoxygenase 2
Search outside databases for aliases for ALOX15B genePrevious GC identifers: GC17P008408 GC17P008813 GC17P007884 GC17P008142
Summaries for ALOX15B (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ALOX15B : This gene encodes a member of the lipoxygenase family of structurally related nonheme irondioxygenases involved in the production of fatty acid hydroperoxides. The encoded protein convertsarachidonic acid exclusively to 15S-hydroperoxyeicosatetraenoic acid, while metabolizing linoleicacid less effectively. This gene is located in a cluster of related genes and a pseudogene thatspans approximately 100 kilobases on the short arm of chromosome 17. Alternatively splicedtranscript variants encoding different isoforms have been described. [provided by RefSeq] UniProtKB/Swiss-Prot: LX15B_HUMAN, O15296 Function : Converts arachidonic acid exclusively to 15S-hydroperoxyeicosatetraenoic acid, whilelinoleic acid is less well metabolized
Gene Wiki entry for ALOX15B
Genomic Location for ALOX15B
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ALOX15B gene Entrez Gene cytogenetic band: 17p13.1 Ensembl cytogenetic band: 17p13.1 HGNC cytogenetic band: 17p13.1 ALOX15B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P007883:
(about GC identifiers )
Start:
7,883,083 bp from pter
End:
7,893,177 bp from pter
Size:
10,095 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000017.9 NT_010718.15 Proteins for ALOX15B
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: LX15B_HUMAN, O15296 (See
protein sequence )Recommended Name: Arachidonate 15-lipoxygenase type II Size : 676 amino acids; 75885 Da
Cofactor : Binds 1 iron ion per subunit (By similarity)
Subcellular location : Cytoplasm (By similarity)
Secondary accessions : Q8IYQ2 Q8TEV3 Q8TEV4 Q8TEV5 Q8TEV6 Q9UKM4Alternative splicing : 4 isoforms : O15296-1 O15296-2 O15296-3 O15296-4
REFSEQ proteins (3 alternative transcripts):
NP_001034219.1 NP_001034220.1 NP_001132.2 ENSEMBL proteins: ENSP00000369520 ENSP00000369530 ENSP00000344337 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ALOX15B: Assays for ALOX15B:
Protein
Domains/ Families for ALOX15B(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry O15296 ProtoNet protein and cluster: O15296
3 Blocks protein families : IPB000907 Lipoxygenase IPB001024 Lipoxygenase IPB001885 Mammalian lipoxygenase signature UniProtKB/Swiss-Prot: LX15B_HUMAN, O15296 Similarity : Belongs to the lipoxygenase familySimilarity : Contains 1 lipoxygenase domainSimilarity : Contains 1 PLAT domain
Gene Function for ALOX15B
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001039130 Applied Biosystems Silencer ® siRNAs for ALOX15B Sigma-Aldrich siRNA and siRNA Panels for ALOX15B Sigma-Aldrich shRNA Panels and shRNA for ALOX15B Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001039130                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001039130                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001039130  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001141 UniProtKB/Swiss-Prot: LX15B_HUMAN, O15296 Function : Converts arachidonic acid exclusively to 15S-hydroperoxyeicosatetraenoic acid, whilelinoleic acid is less well metabolized Catalytic activity : Arachidonate + O(2) =(5Z,8Z,11Z,13E)-(15S)-15-hydroperoxyicosa-5,8,11,13-tetraenoate Enzyme Number (IUBMB): EC 1.13.11.33
5 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for ALOX15B
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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3 Sigma-Aldrich "Your Favorite Gene" Pathways for ALOX15B (Your Favorite Gene powered by Ingenuity) UniProtKB/Swiss-Prot: LX15B_HUMAN, O15296 Pathway : Lipid metabolism; leukotriene D4 biosynthesis
Gene Network CentralTM Interacting Genes and Proteins Network for ALOX15B 5/11 Gene Ontology (GO) biological process terms (links to tree view) (see all 11
):
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Drugs & Compounds for ALOX15B (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for ALOX15B
Browse Tocris compounds for ALOX15B 5 Novoseek chemical compound relationships for ALOX15B gene
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Transcripts for ALOX15B(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001039130 Sigma-Aldrich siRNA and siRNA Panels for ALOX15B Sigma-Aldrich shRNA Panels and shRNA for ALOX15B Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001039130 NM_001039131 NM_001141
REFSEQ mRNAs for ALOX15B gene (3 alternative transcripts): NM_001039130.1 NM_001039131.1 NM_001141.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001039130 NM_001039131 NM_001141
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001039130                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001039130                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001039130  
Additional cDNA sequence: AF468051.1 AF468052.1 AF468053.1 AF468054.1 AK292779.1 AK298095.1 AK300554.1 BC033294.1 BC035217.1 BC063647.1 U78294.1
7 DOTS entries : DT.108481 DT.101981385 DT.97790313 DT.97836298 DT.102822610 DT.92419921 DT.99958412
24/63 AceView cDNA sequences (see all 63
):CB051073 BG739709 AI474406 AI695749 AI817643 AI829771 BG740579 CA307212 BG675395 CA405703 AW294456 BX106451 BG740763 BC063647 BG741964 BG698185 BG697910 BG696031 BC033294 BG675344 AF468051 BG739941 BX343731 BG696804
highest scoring ESTs for ALOX15B :U78294 AA228916 AA229624 AA468451 AA470333 AA595521 AF468051 AF468052 AF468053 AF468054
Unigene Cluster for ALOX15B: Arachidonate 15-lipoxygenase, type B Hs.111256 [show with all ESTs ] Unigene Representative Sequence: BC033294 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for ALOX15B ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12a · 12b ^ 13 ^ 14a · 14b SP1 :         -                       -           SP2 :         -               -         -           SP3 :         -               -     -   -   -           SP4 :                                         SP5 :                                        
About this scheme ECgene alternative splicing isoforms for ALOX15B 3 Ensembl transcripts including schematic representations : ENST00000380173
ENST00000380183
ENST00000339694
Expression for ALOX15B
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ALOX15B expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ALOX15B 1 / 2 / 3
4 probe-sets matching ALOX15B gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CCCATAATCCSOURCE GeneReport for Unigene cluster: Hs.111256 Expression variation in blood from EXPOLDB for ALOX15B
UniProtKB/Swiss-Prot: LX15B_HUMAN, O15296 Tissue specificity : Expressed in hair, prostate, lung and cornea
Orthologs for ALOX15B
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ALOX15B gene from 5/6 species (see all 6
)
About this table Species with no ortholog for ALOX15B ENSEMBL Gene Tree for ALOX15B Paralogs for ALOX15B (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ALOX15B gene ALOX12P2 2 ALOX15 2 ALOX12 2
SNPs/Variants for ALOX15B (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ALOX15B (up to first 250kb)
Disorders & Mutations for ALOX15B
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 603697 10/12 Novoseek disease relationships for ALOX15B gene (see all 12
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
prostate carcinoma
56.83
9
11014584 (2), 11212240 (1), 15257547 (1), 12189136 (1) (see all 5 )
prostatic adenocarcinoma
54.71
9
10393855 (4), 11014584 (1), 11442747 (1)
prostatic intraepithelial neoplasia
46.99
1
11014584 (1)
hnscc
41.44
2
16874012 (1)
prostate cancer
35.65
15
11839751 (5), 12189136 (2), 12085962 (1), 17164141 (1) (see all 6 )
premalignant
26.37
1
12659684 (1)
tumors
25.90
54
11014584 (7), 12704195 (3), 15257547 (3), 15799828 (3) (see all 12 )
carcinoma squamous cell
17.19
3
16581564 (1), 16874012 (1)
carcinoma
16.61
10
16874012 (5), 16581564 (1), 15257547 (1), 11442747 (1)
cancer
0.00
8
12659684 (3), 15799828 (2), 12189136 (1), 16682954 (1)
About this table Human Genome Epidemiology Navigator: ALOX15B (1 document)
Medical News for ALOX15B (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ALOX15B (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/61 PubMed articles for ALOX15B gene (see all 61
): Discovery of a second 15S-lipoxygenase in humans. (PubMed id 9177185) 1, 2, 3, 4 Brash A.R.... Chang M.S. (1997) Evidence that arachidonate 15-lipoxygenase 2 is a negative cell cycle regulator in normal prostate epithelial cells. (PubMed id 11839751) 1, 3, 4 Tang S.... Tang D.G. (2002) A gene cluster encoding human epidermis-type lipoxygenases at chromosome 17p13.1: cloning, physical mapping, and expression. (PubMed id 11350124) 1, 3, 4 Krieg P.... Fuerstenberger G. (2001) Differential characteristics of human 15-lipoxygenase isozymes and a novel splice variant of 15S-lipoxygenase. (PubMed id 10542053) 1, 3, 4 Kilty I.... Vickers P.J. (1999) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Subcellular localization and tumor-suppressive functions of 15-lipoxygenase 2 (15-LOX2) and its splice variants. (PubMed id 12704195) 1, 3 Bhatia B....Tang D.G. (2003) Reduction of isoforms of 15-lipoxygenase (15-LOX)-1 and 15-LOX-2 in human breast cancer. (PubMed id 16556493) 1, 3 Jiang W.G....Mansel R.E. (2006) Evidence that Sp1 positively and Sp3 negatively regulate and androgen does not directly regulate functional tumor suppressor 15-lipoxygenase 2 (15-LOX2) gene expression in normal human prostate epithelial cells. (PubMed id 15247906) 1, 3 Tang S....Tang D.G. (2004) 15-Lipoxygenase-2 gene regulation by its product 15-(S)-hydroxyeicosatetraenoic acid through a negative feedback mechanism that involves peroxisome proliferator-activated receptor gamma. (PubMed id 16682954) 1, 3 Subbarayan V....Menter D.G. (2006) Inverse relationship between 15-lipoxygenase-2 and PPAR-gamma gene expression in normal epithelia compared with tumor epithelia. (PubMed id 15799828) 1, 3 Subbarayan V....Menter D.G. (2005)
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Genome Databases showing ALOX15B
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ALOX15B
(According to HUGE )
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Specialized Databases showing ALOX15B (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for ALOX15B (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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