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Aliases for ALOX12P2 Gene

Aliases for ALOX12P2 Gene

  • Arachidonate 12-Lipoxygenase Pseudogene 2 2 3 5
  • Hair And Skin Epidermal-Type 12-Lipoxygenase-Related Pseudogene 3
  • 12-Lipoxygenase-Related Protein 3
  • ALOX12E 3

External Ids for ALOX12P2 Gene

Previous GeneCards Identifiers for ALOX12P2 Gene

  • GC17P007185
  • GC17P007528
  • GC17P006701
  • GC17U900075
  • GC17P006997
  • GC17P006737
  • GC17P006759

Summaries for ALOX12P2 Gene

GeneCards Summary for ALOX12P2 Gene

ALOX12P2 (Arachidonate 12-Lipoxygenase Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALOX12P2 Gene

Genomics for ALOX12P2 Gene

Regulatory Elements for ALOX12P2 Gene

Promoters for ALOX12P2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ALOX12P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for ALOX12P2 Gene

Chromosome:
17
Start:
6,853,576 bp from pter
End:
6,954,107 bp from pter
Size:
100,532 bases
Orientation:
Plus strand

Genomic View for ALOX12P2 Gene

Genes around ALOX12P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALOX12P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALOX12P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALOX12P2 Gene

Proteins for ALOX12P2 Gene

Post-translational modifications for ALOX12P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALOX12P2 Gene

Domains & Families for ALOX12P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ALOX12P2 Gene

Function for ALOX12P2 Gene

Molecular function for ALOX12P2 Gene

GENATLAS Biochemistry:
arachidonate-12-lipoxygenase,epidermal type,expressed pseudogene

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALOX12P2 Gene

Localization for ALOX12P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ALOX12P2 Gene

Pathways & Interactions for ALOX12P2 Gene

SuperPathways for ALOX12P2 Gene

No Data Available

Interacting Proteins for ALOX12P2 Gene

Gene Ontology (GO) - Biological Process for ALOX12P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ALOX12P2 Gene

Drugs & Compounds for ALOX12P2 Gene

No Compound Related Data Available

Transcripts for ALOX12P2 Gene

Unigene Clusters for ALOX12P2 Gene

Arachidonate 12-lipoxygenase pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ALOX12P2 Gene

No ASD Table

Relevant External Links for ALOX12P2 Gene

GeneLoc Exon Structure for
ALOX12P2
ECgene alternative splicing isoforms for
ALOX12P2

Expression for ALOX12P2 Gene

mRNA expression in normal human tissues for ALOX12P2 Gene

mRNA differential expression in normal tissues according to GTEx for ALOX12P2 Gene

This gene is overexpressed in Pituitary (x8.3) and Liver (x8.1).

SOURCE GeneReport for Unigene cluster for ALOX12P2 Gene Hs.378695

genes like me logo Genes that share expression patterns with ALOX12P2: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for ALOX12P2 Gene

Orthologs for ALOX12P2 Gene

Evolution for ALOX12P2 Gene

ENSEMBL:
Gene Tree for ALOX12P2 (if available)
TreeFam:
Gene Tree for ALOX12P2 (if available)

No data available for Orthologs for ALOX12P2 Gene

Paralogs for ALOX12P2 Gene

No data available for Paralogs for ALOX12P2 Gene

Variants for ALOX12P2 Gene

Sequence variations from dbSNP and Humsavar for ALOX12P2 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs191101 -- 6,896,149(-) CATGA(C/G)TGATG intron-variant
rs191102 -- 6,895,832(-) ATgtt(C/T)tcaat intron-variant
rs167476 -- 6,895,612(-) gttga(A/G)aaacc intron-variant
rs167477 -- 6,895,569(-) CTGGA(A/G)ATGGG intron-variant
rs167478 -- 6,895,427(-) TTGAA(A/G)AACAC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for ALOX12P2 Gene

Variant ID Type Subtype PubMed ID
nsv907630 CNV Gain 21882294
esv2422288 CNV Deletion 17116639
nsv521515 CNV Loss 19592680
esv2715590 CNV Deletion 23290073
nsv518777 CNV Gain 19592680
esv21524 CNV Loss 19812545

Relevant External Links for ALOX12P2 Gene

HapMap Linkage Disequilibrium report
ALOX12P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ALOX12P2 Gene

Disorders for ALOX12P2 Gene

Relevant External Links for ALOX12P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ALOX12P2

No disorders were found for ALOX12P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALOX12P2 Gene

Publications for ALOX12P2 Gene

  1. Cloning of a human "epidermal-type" 12-lipoxygenase-related gene and chromosomal localization to 17p13. (PMID: 9691181) Sun D. … Funk C.D. (Cytogenet. Cell Genet. 1998) 2 3 67
  2. Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2. (PMID: 24322204) Winham S.J. … Biernacka J.M. (Mol. Psychiatry 2013) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Characterization of human 12-lipoxygenase genes. (PMID: 1570320) Funk C.D. … Samuelsson B. (Proc. Natl. Acad. Sci. U.S.A. 1992) 3

Products for ALOX12P2 Gene

Sources for ALOX12P2 Gene

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