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Aliases & Descriptions for ALOX12B
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| 12R-LOX 1, 2, 3 | | 12R-lipoxygenase 3 | | EC 1.13.11.- 3 |
| | | Descriptions |
|---|
| Epidermis-type lipoxygenase 12 2, 3 | | arachidonate 12-lipoxygenase, 12R type 2 |
|
| | Search outside databases for aliases for ALOX12B genePrevious GC identifers: GC17P008465 GC17M008847 GC17M007918 GC17M008176 |
Summaries for ALOX12B(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ALOX12B: This gene encodes an enzyme involved in the converstion of arachidonic acid to 12R-hydroxyeicosatetraenoic acid. Mutations in this gene are associated with nonbullous congenital ichthyosiform erythroderma. [provided by RefSeq] UniProtKB/Swiss-Prot: LX12B_HUMAN, O75342Function: Converts arachidonic acid to 12R-hydroperoxyeicosatetraenoic acid (12R-HPETE)Gene Wiki entry for ALOX12B |
Genomic Location for ALOX12B
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ALOX12B gene 
Entrez Gene cytogenetic band: 17p13.1 Ensembl cytogenetic band: 17p13.1 HGNC cytogenetic band: 17p13.1ALOX12B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure GeneLoc location for GC17M007916:
(about GC identifiers)
Start:
|
7,916,679 bp from pter |
End:
|
7,931,746 bp from pter |
Size:
|
15,068 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000017.9 NT_010718.15
| Proteins for ALOX12B
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: LX12B_HUMAN, O75342 (See
protein sequence)Recommended Name: Arachidonate 12-lipoxygenase, 12R type Size: 701 amino acids; 80356 Da
Cofactor: Binds 1 iron ion per subunit (By similarity)REFSEQ proteins: NP_001130.1
ENSEMBL proteins: ENSP00000315167
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
Antibodies for ALOX12B: Assays for ALOX12B: | Protein
Domains/ Families for ALOX12B(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry O75342
ProtoNet protein and cluster: O75342 3 Blocks protein families: IPB000907 Lipoxygenase IPB001024 Lipoxygenase IPB001885 Mammalian lipoxygenase signature
UniProtKB/Swiss-Prot: LX12B_HUMAN, O75342Similarity: Belongs to the lipoxygenase familySimilarity: Contains 1 lipoxygenase domainSimilarity: Contains 1 PLAT domain | Gene Function for ALOX12B
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001139
Applied Biosystems Silencer® siRNAs for ALOX12B
Sigma-Aldrich siRNA and siRNA Panels for ALOX12B  Sigma-Aldrich shRNA for ALOX12B  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001139                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001139                                  untagged cDNA clone in CMV expression vector: NM_001139 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001139
UniProtKB/Swiss-Prot: LX12B_HUMAN, O75342Function: Converts arachidonic acid to 12R-hydroperoxyeicosatetraenoic acid (12R-HPETE)Enzyme Number (IUBMB): EC 1.13.11.- 4 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Alox12b):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ALOX12B
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
3 Sigma-Aldrich "Your Favorite Gene" Pathways for ALOX12B (Your Favorite Gene powered by Ingenuity) 
UniProtKB/Swiss-Prot: LX12B_HUMAN, O75342Pathway: Lipid metabolism; leukotriene D4 biosynthesis4 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for ALOX12B(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for ALOX12B |
Browse Tocris compounds for ALOX12B 2 Novoseek chemical compound relationships for ALOX12B gene
About this table
|
Transcripts for ALOX12B(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001139
Sigma-Aldrich siRNA and siRNA Panels for ALOX12B  Sigma-Aldrich shRNA for ALOX12B  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001139 REFSEQ mRNAs for ALOX12B gene: NM_001139.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001139               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001139                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001139                                  untagged cDNA clone in CMV expression vector: NM_001139  Additional cDNA sequence: AF038461.1 AF059250.1 BC041058.1 6 DOTS entries: DT.91785069 DT.97792515 DT.97826992 DT.100695991 DT.102821098 DT.97791482 15 AceView cDNA sequences:AF038461 AF059250 BX348205 NM_001139 BC041058 BX095379 BI667266 BG436629 BG698713 BX331920 BE715737 BM727907 BG946103 AA649213 BM563254
highest scoring ESTs for ALOX12B:AF059250 AF038461 BC041058 BM563254 AA649213 BE715737 BG698713 BI667266 NM_001139 BG436629 Unigene Cluster for ALOX12B: Arachidonate 12-lipoxygenase, 12R type Hs.136574 [show with all ESTs]Unigene Representative Sequence: NM_001139
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for ALOX12B
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ALOX12B
1 Ensembl transcript including schematic representation: ENST00000319144
|
Expression for ALOX12B
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ALOX12B expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ALOX12B
1 / 2 / 3 3 probe-sets matching ALOX12B gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GACACGTTGC
SOURCE GeneReport for Unigene cluster: Hs.136574
Expression variation in blood from EXPOLDB for ALOX12B UniProtKB/Swiss-Prot: LX12B_HUMAN, O75342Tissue specificity: Expressed in B-cells, hair follicles, foreskin keratinocytes and adult skin. Also expressed in psoriatic tissue |
Orthologs for ALOX12B
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ALOX12B gene from 5 species
About this table Species with no ortholog for ALOX12B
ENSEMBL Gene Tree for ALOX12B | Paralogs for ALOX12B(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ALOX12B gene
- ALOX52 ALOXE32
|
SNPs/Variants for ALOX12B(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ALOX12B (up to first 250kb)
|
Disorders & Mutations for ALOX12B
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 603741 disorders: 242100 UniProtKB/Swiss-Prot: LX12B_HUMAN, O75342
Defects in ALOX12B are a cause of non-bullous congenital ichthyosiform erythroderma (NCIE) [MIM:242100]. NCIE is a non-bullous ichthyosis, a skin disorder characterized by abnormal cornification of the epidermis. Most affected individuals are born with a tight, shiny, translucent covering called collodion membrane. The collodion membrane subsequently evolves into generalized scaling and intense redness of the skin. Clinical features are milder than in lamellar ichthyoses and demonstrate a greater variability in the intensity of erythema, size and type of scales. In contrast to lamellar ichthyoses, scales are usually white, fine and powdery, and palms and soles are severely affected. Patients suffer from palmoplantar keratoderma, often with painful fissures, digital contractures, and loss of pulp volume5 Novoseek disease relationships for ALOX12B gene
About this table
GeneTests: ALOX12B Autosomal Recessive Congenital Ichthyosis Human Gene Mutation Database: ALOX12B Human Genome Epidemiology Navigator: ALOX12B (5 documents)
|
Medical News for ALOX12B(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ALOX12B (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/31 PubMed articles for ALOX12B gene (see all 31
):- A 12R-lipoxygenase in human skin: mechanistic evidence, molecular cloning, and expression. (PubMed id 9618483)1, 2, 3, 4 Boeglin W.E.... Brash A.R. (1998)
- A gene cluster encoding human epidermis-type lipoxygenases at chromosome 17p13.1: cloning, physical mapping, and expression. (PubMed id 11350124)1, 3, 4 Krieg P.... Fuerstenberger G. (2001)
- Lipoxygenase-3 (ALOXE3) and 12(R)-lipoxygenase (ALOX12B) are mutated in non-bullous congenital ichthyosiform erythroderma (NCIE) linked to chromosome 17p13.1. (PubMed id 11773004)1, 3, 4 Jobard F.... Fischer J. (2002)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Human 12(R)-lipoxygenase and the mouse ortholog. Molecular cloning, expression, and gene chromosomal assignment. (PubMed id 9837935)3, 4 Sun D.... Funk C.D. (1998)
- Mutations associated with a congenital form of ichthyosis (NCIE) inactivate the epidermal lipoxygenases 12R-LOX and eLOX3. (PubMed id 15629692)1, 3 Yu Z....Brash A.R. (2005)
- Detection and cellular localization of 12R-lipoxygenase in human tonsils. (PubMed id 11368351)1, 3 Schneider C....Brash A.R. (2001)
- Self-healing collodion membrane and mild nonbullous congenital ichthyosiform erythroderma due to 2 novel mutations in the ALOX12B gene. (PubMed id 18347291)1, 3 Harting M....Levy M.L. (2008)
- Novel mutations in ALOX12B in patients with autosomal recessive congenital ichthyosis and evidence for genetic heterogeneity on chromosome 17p13. (PubMed id 17139268)1, 3 Lesueur F....Fischer J. (2007)
- Epidermal lipoxygenase products of the hepoxilin pathway selectively activate the nuclear receptor PPARalpha. (PubMed id 17436029)1, 3 Yu Z....Brash A.R. (2007)
|
Search for ALOX12B
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ALOX12B
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ALOX12B
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ALOX12B(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| GeneReviews | http://www.genetests.org/query?gene=ALOX12B |
|
| | | About This Section
| --
| Services for ALOX12B(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ALOX12B:

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