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Aliases for ALOX12-AS1 Gene

Subcategory (RNA class) for ALOX12-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ALOX12-AS1 Gene

  • ALOX12 Antisense RNA 1 2 3 5

External Ids for ALOX12-AS1 Gene

Summaries for ALOX12-AS1 Gene

GeneCards Summary for ALOX12-AS1 Gene

ALOX12-AS1 (ALOX12 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALOX12-AS1 Gene

Genomics for ALOX12-AS1 Gene

Regulatory Elements for ALOX12-AS1 Gene

Enhancers for ALOX12-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G006913 1 Ensembl ENCODE 12.7 +98.2 98208 0.9 CTCF RB1 RAD21 ZNF664 POLR2A ZNF143 SMC3 CREM EZH2 STAT1 ALOX12 ALOX12-AS1 RNASEK RNASEK-C17orf49 MIR195 BCL6B SLC16A11 C17orf100 MED31 SLC13A5
GH17G006843 0.7 ENCODE 11.9 +168.9 168893 0.2 CTCF ZFP64 RAD21 ZNF697 SMC3 RFX1 ZNF654 ZBTB11 ZNF426 REST NLGN2 DVL2 ALOX12 RNASEK-C17orf49 RNASEK ALOX12-AS1 MIR497HG SLC13A5 MED31 C17orf100
GH17G006919 0.7 FANTOM5 11.4 +92.6 92596 0.4 HDAC1 PKNOX1 TFAP4 ZNF175 CEBPG GABPA POLR2H ZNF589 SMARCA4 TARDBP ALOX12 ALOX12-AS1 RNASEK-C17orf49 RNASEK BCL6B SLC13A5 MIR195 SLC16A11 GC17M006933 GC17P006901
GH17G007004 0.8 ENCODE 0.4 +7.4 7383 0.2 HDGF CTCF FEZF1 ZNF2 RAD21 CTBP1 ARID3A GATA2 ZNF143 ZNF207 GC17M007005 ALOX12-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ALOX12-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ALOX12-AS1 Gene

Chromosome:
17
Start:
6,876,635 bp from pter
End:
7,012,349 bp from pter
Size:
135,715 bases
Orientation:
Minus strand

Genomic View for ALOX12-AS1 Gene

Genes around ALOX12-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALOX12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALOX12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALOX12-AS1 Gene

Proteins for ALOX12-AS1 Gene

Post-translational modifications for ALOX12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALOX12-AS1 Gene

Domains & Families for ALOX12-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ALOX12-AS1 Gene

Function for ALOX12-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALOX12-AS1 Gene

Localization for ALOX12-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ALOX12-AS1 gene
Compartment Confidence
extracellular 3
cytoskeleton 2
cytosol 2
mitochondrion 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ALOX12-AS1 Gene

Pathways & Interactions for ALOX12-AS1 Gene

SuperPathways for ALOX12-AS1 Gene

No Data Available

Interacting Proteins for ALOX12-AS1 Gene

Gene Ontology (GO) - Biological Process for ALOX12-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ALOX12-AS1 Gene

Drugs & Compounds for ALOX12-AS1 Gene

No Compound Related Data Available

Transcripts for ALOX12-AS1 Gene

mRNA/cDNA for ALOX12-AS1 Gene

(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ALOX12-AS1 Gene

No ASD Table

Relevant External Links for ALOX12-AS1 Gene

GeneLoc Exon Structure for
ALOX12-AS1
ECgene alternative splicing isoforms for
ALOX12-AS1

Expression for ALOX12-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ALOX12-AS1 Gene

genes like me logo Genes that share expression patterns with ALOX12-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALOX12-AS1 Gene

Orthologs for ALOX12-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ALOX12-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 57 (a)
OneToOne
Species where no ortholog for ALOX12-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ALOX12-AS1 Gene

ENSEMBL:
Gene Tree for ALOX12-AS1 (if available)
TreeFam:
Gene Tree for ALOX12-AS1 (if available)

Paralogs for ALOX12-AS1 Gene

No data available for Paralogs for ALOX12-AS1 Gene

Variants for ALOX12-AS1 Gene

Sequence variations from dbSNP and Humsavar for ALOX12-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000072006 -- 7,003,661(+) GGGCT(C/T)AAGCG intron-variant
rs1000135530 -- 7,002,434(+) AAGTC(C/T)AAGCT intron-variant
rs1000153685 -- 6,995,809(+) CTTCC(A/C)GGGAG intron-variant, upstream-variant-2KB, reference, synonymous-codon
rs1000226884 -- 7,006,678(+) GCCCT(C/T)CTGGG intron-variant
rs1000296550 -- 7,012,914(+) AATGG(A/G)AACTG intron-variant, upstream-variant-2KB

Relevant External Links for ALOX12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALOX12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ALOX12-AS1 Gene

Disorders for ALOX12-AS1 Gene

Relevant External Links for ALOX12-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ALOX12-AS1

No disorders were found for ALOX12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALOX12-AS1 Gene

Publications for ALOX12-AS1 Gene

  1. An atlas of genetic influences on human blood metabolites. (PMID: 24816252) Shin S.Y. … Soranzo N. (Nat. Genet. 2014) 3 64

Products for ALOX12-AS1 Gene

Sources for ALOX12-AS1 Gene

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