Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ALMS1-IT1 Gene

Subcategory (RNA class) for ALMS1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ALMS1-IT1 Gene

  • ALMS1 Intronic Transcript 1 2 3 5
  • ALMS1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ALMS1-IT1 Gene

Previous GeneCards Identifiers for ALMS1-IT1 Gene

  • GC00U933249
  • GC02P073685

Summaries for ALMS1-IT1 Gene

GeneCards Summary for ALMS1-IT1 Gene

ALMS1-IT1 (ALMS1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALMS1-IT1 Gene

Genomics for ALMS1-IT1 Gene

Regulatory Elements for ALMS1-IT1 Gene

Enhancers for ALMS1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G073895 1.2 Ensembl ENCODE dbSUPER 4.6 +440.0 440031 1.7 NFIB EBF1 RELB IKZF2 MTA2 BHLHE40 NR2F1 CBFB DPF2 REST DGUOK TET3 STAMBP BOLA3 BOLA3-AS1 TPRKB ALMS1-IT1 SMYD5 ACTG2 GC02M073905
GH02G073503 0.7 ENCODE 0.2 +47.5 47523 1.1 HDAC1 FOSL1 ZNF316 NCOR1 POLR2A NFE2 MAFK SMAD5 RNF2 HLF ALMS1-IT1 GC02P073585
GH02G073485 0.4 Ensembl 0.3 +29.1 29137 0.2 FOXA1 ALMS1P1 NAT8 TPRKB ALMS1-IT1 GC02P073585
GH02G073425 0.4 ENCODE 0.3 -30.4 -30429 2.0 MYNN ATF2 ALMS1P1 ALMS1 GNG5P4 ALMS1-IT1
GH02G073515 0.4 ENCODE 0.2 +59.5 59534 1.6 JUNB ALMS1P1 ALMS1 TPRKB ALMS1-IT1 GC02P073585
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ALMS1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ALMS1-IT1 Gene

Chromosome:
2
Start:
73,456,764 bp from pter
End:
73,459,484 bp from pter
Size:
2,721 bases
Orientation:
Plus strand

Genomic View for ALMS1-IT1 Gene

Genes around ALMS1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALMS1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALMS1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALMS1-IT1 Gene

Proteins for ALMS1-IT1 Gene

Post-translational modifications for ALMS1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALMS1-IT1 Gene

Domains & Families for ALMS1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ALMS1-IT1 Gene

Function for ALMS1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALMS1-IT1 Gene

Localization for ALMS1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ALMS1-IT1 Gene

Pathways & Interactions for ALMS1-IT1 Gene

SuperPathways for ALMS1-IT1 Gene

No Data Available

Interacting Proteins for ALMS1-IT1 Gene

Gene Ontology (GO) - Biological Process for ALMS1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ALMS1-IT1 Gene

Drugs & Compounds for ALMS1-IT1 Gene

No Compound Related Data Available

Transcripts for ALMS1-IT1 Gene

mRNA/cDNA for ALMS1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ALMS1-IT1 Gene

No ASD Table

Relevant External Links for ALMS1-IT1 Gene

GeneLoc Exon Structure for
ALMS1-IT1
ECgene alternative splicing isoforms for
ALMS1-IT1

Expression for ALMS1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ALMS1-IT1 Gene

genes like me logo Genes that share expression patterns with ALMS1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALMS1-IT1 Gene

Orthologs for ALMS1-IT1 Gene

Evolution for ALMS1-IT1 Gene

ENSEMBL:
Gene Tree for ALMS1-IT1 (if available)
TreeFam:
Gene Tree for ALMS1-IT1 (if available)

No data available for Orthologs for ALMS1-IT1 Gene

Paralogs for ALMS1-IT1 Gene

No data available for Paralogs for ALMS1-IT1 Gene

Variants for ALMS1-IT1 Gene

Sequence variations from dbSNP and Humsavar for ALMS1-IT1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs878855001 Uncertain significance 73,455,291(+) CTTGT(C/T)CAAGG upstream-variant-2KB, reference, missense
rs1001530688 -- 73,457,960(+) CCTGG(A/G)AGGTG intron-variant, nc-transcript-variant
rs1002380250 -- 73,458,124(+) AACCA(G/T)CTTGT intron-variant, nc-transcript-variant
rs1002590606 -- 73,459,496(+) TTGCT(G/T)CAACA intron-variant, downstream-variant-500B
rs1003661481 -- 73,456,896(+) TCTTG(C/T)GTTCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ALMS1-IT1 Gene

Variant ID Type Subtype PubMed ID
esv3591260 CNV loss 21293372

Relevant External Links for ALMS1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALMS1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ALMS1-IT1 Gene

Disorders for ALMS1-IT1 Gene

Relevant External Links for ALMS1-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ALMS1-IT1

No disorders were found for ALMS1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALMS1-IT1 Gene

Publications for ALMS1-IT1 Gene

No publications were found for ALMS1-IT1 Gene.

Products for ALMS1-IT1 Gene

Sources for ALMS1-IT1 Gene

Content
Loading form....