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Aliases for ALMS1-IT1 Gene

Subcategory (RNA class) for ALMS1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for ALMS1-IT1 Gene

  • ALMS1 Intronic Transcript 1 2 3 5
  • ALMS1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ALMS1-IT1 Gene

Previous GeneCards Identifiers for ALMS1-IT1 Gene

  • GC00U933249
  • GC02P073685

Summaries for ALMS1-IT1 Gene

GeneCards Summary for ALMS1-IT1 Gene

ALMS1-IT1 (ALMS1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALMS1-IT1 Gene

Genomics for ALMS1-IT1 Gene

Regulatory Elements for ALMS1-IT1 Gene

Enhancers for ALMS1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F073895 0.9 Ensembl ENCODE 4.6 +440.0 440031 1.7 MTA2 REST EBF1 TBX21 EP300 IKZF1 NBN ZBTB33 MLLT1 DGUOK TET3 STAMBP BOLA3 BOLA3-AS1 TPRKB ALMS1-IT1 SMYD5 ACTG2 GC02M073905
GH02F073485 0.6 Ensembl 0.3 +29.1 29137 0.2 ALMS1P1 NAT8 TPRKB ALMS1-IT1 GC02P073585
GH02F073425 0.5 ENCODE 0.3 -30.4 -30429 2.0 MYNN ATF2 ALMS1P1 ALMS1 GNG5P4 ALMS1-IT1
GH02F073417 0.4 ENCODE 0.3 -38.2 -38162 1.4 ALMS1 NAT8 SMYD5 GNG5P4 ALMS1-IT1
GH02F073503 0.2 ENCODE 0.2 +47.5 47523 1.1 ZNF316 NCOR1 POLR2A NFE2 MAFK SMAD5 RNF2 HLF MNT DPF2 ALMS1-IT1 GC02P073585
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ALMS1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ALMS1-IT1 Gene

73,456,764 bp from pter
73,459,484 bp from pter
2,721 bases
Plus strand

Genomic View for ALMS1-IT1 Gene

Genes around ALMS1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALMS1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALMS1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALMS1-IT1 Gene

Proteins for ALMS1-IT1 Gene

Post-translational modifications for ALMS1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALMS1-IT1 Gene

Domains & Families for ALMS1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ALMS1-IT1 Gene

Function for ALMS1-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALMS1-IT1 Gene

Localization for ALMS1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ALMS1-IT1 Gene

Pathways & Interactions for ALMS1-IT1 Gene

SuperPathways for ALMS1-IT1 Gene

No Data Available

Interacting Proteins for ALMS1-IT1 Gene

Gene Ontology (GO) - Biological Process for ALMS1-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for ALMS1-IT1 Gene

Transcripts for ALMS1-IT1 Gene

mRNA/cDNA for ALMS1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ALMS1-IT1 Gene

No ASD Table

Relevant External Links for ALMS1-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ALMS1-IT1 Gene

mRNA expression in normal human tissues for ALMS1-IT1 Gene

genes like me logo Genes that share expression patterns with ALMS1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ALMS1-IT1 Gene

Orthologs for ALMS1-IT1 Gene

Evolution for ALMS1-IT1 Gene

Gene Tree for ALMS1-IT1 (if available)
Gene Tree for ALMS1-IT1 (if available)

No data available for Orthologs for ALMS1-IT1 Gene

Paralogs for ALMS1-IT1 Gene

No data available for Paralogs for ALMS1-IT1 Gene

Variants for ALMS1-IT1 Gene

Sequence variations from dbSNP and Humsavar for ALMS1-IT1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs878855001 Uncertain significance 73,455,291(+) CTTGT(C/T)CAAGG upstream-variant-2KB, reference, missense
rs10460573 -- 73,457,465(+) cttga(A/G)ctcct intron-variant
rs111354425 -- 73,459,967(+) TATCT(A/G)TTACT intron-variant, downstream-variant-500B
rs112308762 -- 73,458,826(+) AATGC(C/T)TCCCA intron-variant, nc-transcript-variant
rs113217869 -- 73,459,456(+) TAAAA(A/T)AGCTT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for ALMS1-IT1 Gene

Variant ID Type Subtype PubMed ID
esv3591260 CNV loss 21293372

Relevant External Links for ALMS1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ALMS1-IT1 Gene

Disorders for ALMS1-IT1 Gene

Relevant External Links for ALMS1-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for ALMS1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALMS1-IT1 Gene

Publications for ALMS1-IT1 Gene

No publications were found for ALMS1-IT1 Gene.

Products for ALMS1-IT1 Gene

Sources for ALMS1-IT1 Gene

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