Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ALKBH3-AS1 Gene

Subcategory (RNA class) for ALKBH3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ALKBH3-AS1 Gene

  • ALKBH3 Antisense RNA 1 2 3 5

External Ids for ALKBH3-AS1 Gene

Summaries for ALKBH3-AS1 Gene

GeneCards Summary for ALKBH3-AS1 Gene

ALKBH3-AS1 (ALKBH3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ALKBH3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALKBH3-AS1 Gene

Genomics for ALKBH3-AS1 Gene

Regulatory Elements for ALKBH3-AS1 Gene

Enhancers for ALKBH3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H043738 1.4 FANTOM5 Ensembl ENCODE 10.7 +181.6 181574 1 HDAC1 ATF1 FEZF1 ZNF366 CREM CEBPB ZEB2 ZNF843 ZNF592 ZNF217 HSD17B12 ALKBH3 PPIAP41 SEC14L1P1 ALKBH3-AS1 API5 RN7SKP287 EXT2 ENSG00000254409 TTC17
GH11H043941 1.2 ENCODE dbSUPER 11.8 -22.6 -22644 4 ATF1 YY1 GLIS2 ZNF143 FOS RUNX3 REST ZNF592 SNIP1 CBX8 SEC14L1P1 ALKBH3 EXT2 ENSG00000254907 TTC17 ACCS ALKBH3-AS1 ENSG00000254409 LOC105376644 ENSG00000244953
GH11H043868 1.3 Ensembl ENCODE 10.6 +51.8 51797 1 PKNOX1 ATF1 ARNT YY1 TCF12 ZNF766 GATA2 ZNF207 ATF7 RUNX3 ALKBH3-AS1 C11orf96 HSD17B12 MIR129-2 ALKBH3 ENSG00000283375 LOC105376644
GH11H043946 1 ENCODE dbSUPER 11.8 -26.6 -26554 1 HDAC1 CTCF RB1 RAD21 MTA3 ZNF316 CTBP1 DIDO1 POLR2A ZNF600 C11orf96 ALKBH3-AS1 ENSG00000254409 LOC105376644 ALKBH3 ENSG00000244953 GC11P043987
GH11H043992 1 Ensembl ENCODE dbSUPER 11.5 -72.1 -72117 1 IRF2 POLR2A ZNF512 PRDM1 ALKBH3-AS1 ENSG00000254409 GC11P043987 ACCS
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ALKBH3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ALKBH3-AS1 Gene

Chromosome:
11
Start:
43,909,289 bp from pter
End:
43,920,944 bp from pter
Size:
11,656 bases
Orientation:
Minus strand

Genomic View for ALKBH3-AS1 Gene

Genes around ALKBH3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALKBH3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALKBH3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALKBH3-AS1 Gene

Proteins for ALKBH3-AS1 Gene

Post-translational modifications for ALKBH3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALKBH3-AS1 Gene

Domains & Families for ALKBH3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ALKBH3-AS1 Gene

Function for ALKBH3-AS1 Gene

Phenotypes From GWAS Catalog for ALKBH3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALKBH3-AS1 Gene

Localization for ALKBH3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALKBH3-AS1 Gene

Pathways & Interactions for ALKBH3-AS1 Gene

SuperPathways for ALKBH3-AS1 Gene

No Data Available

Interacting Proteins for ALKBH3-AS1 Gene

Gene Ontology (GO) - Biological Process for ALKBH3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ALKBH3-AS1 Gene

Drugs & Compounds for ALKBH3-AS1 Gene

No Compound Related Data Available

Transcripts for ALKBH3-AS1 Gene

mRNA/cDNA for ALKBH3-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ALKBH3-AS1 Gene

No ASD Table

Relevant External Links for ALKBH3-AS1 Gene

GeneLoc Exon Structure for
ALKBH3-AS1
ECgene alternative splicing isoforms for
ALKBH3-AS1

Expression for ALKBH3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ALKBH3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ALKBH3-AS1 Gene

This gene is overexpressed in Testis (x17.9).
genes like me logo Genes that share expression patterns with ALKBH3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALKBH3-AS1 Gene

Orthologs for ALKBH3-AS1 Gene

Evolution for ALKBH3-AS1 Gene

ENSEMBL:
Gene Tree for ALKBH3-AS1 (if available)
TreeFam:
Gene Tree for ALKBH3-AS1 (if available)

No data available for Orthologs for ALKBH3-AS1 Gene

Paralogs for ALKBH3-AS1 Gene

No data available for Paralogs for ALKBH3-AS1 Gene

Variants for ALKBH3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ALKBH3-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000186486 -- 43,919,366(+) GCTGC(C/G)TATTG intron-variant, upstream-variant-2KB
rs1000266609 -- 43,916,552(+) GGGGG(G/T)TGTGT intron-variant
rs1000326399 -- 43,909,425(+) AACAA(C/T)TTTGC intron-variant, nc-transcript-variant
rs1000564751 -- 43,922,903(+) CTTCA(A/C)ACATG intron-variant, upstream-variant-2KB
rs1000611439 -- 43,909,633(+) TAGCT(C/G)TAACA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for ALKBH3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3434768 CNV insertion 20981092
nsv467867 CNV gain 19166990
nsv554171 CNV gain 21841781
nsv832138 CNV gain 17160897

Relevant External Links for ALKBH3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALKBH3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ALKBH3-AS1 Gene

Disorders for ALKBH3-AS1 Gene

Relevant External Links for ALKBH3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ALKBH3-AS1

No disorders were found for ALKBH3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALKBH3-AS1 Gene

Publications for ALKBH3-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for ALKBH3-AS1 Gene

Sources for ALKBH3-AS1 Gene

Content
Loading form....