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Aliases for ALG9-IT1 Gene

Subcategory (RNA class) for ALG9-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for ALG9-IT1 Gene

  • ALG9 Intronic Transcript 1 2 3 5
  • ALG9 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ALG9-IT1 Gene

Previous GeneCards Identifiers for ALG9-IT1 Gene

  • GC00U933848
  • GC11M111688

Summaries for ALG9-IT1 Gene

GeneCards Summary for ALG9-IT1 Gene

ALG9-IT1 (ALG9 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALG9-IT1 Gene

Genomics for ALG9-IT1 Gene

Regulatory Elements for ALG9-IT1 Gene

Enhancers for ALG9-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G111828 0.8 dbSUPER 0.7 -0.5 -534 1.5 PKNOX1 TBL1XR1 BACH1 BMI1 ZNF316 ARID3A RELB CREM MAFK MTA2 SIK2 MIR34B MIR34C BTG4 C11orf88 HSPB2-C11orf52 HSPB2 C11orf52 CRYAB ENSG00000254980
GH11G111841 1.4 Ensembl ENCODE dbSUPER 0.4 -12.3 -12298 0.7 HDAC1 ELF3 ATF1 RB1 INSM2 ARID4B FEZF1 ZNF2 RAD21 YY1 ALG9-IT1 GNG5P3
GH11G111818 1.2 Ensembl ENCODE dbSUPER 0.4 +9.6 9640 2.8 PKNOX1 ZNF146 ETV1 ZNF175 CEBPB CEBPG NR2F2 GABPA JUND ATF3 PPP2R1B ALG9-IT1 ENSG00000254990
GH11G111844 1.2 Ensembl ENCODE dbSUPER 0.4 -17.2 -17154 3.1 PKNOX1 MAX FEZF1 ZNF316 ZNF600 FOS MAFK NFE2L2 ZNF10 CEBPB PPP2R1B ALG9 SIK2 FDXACB1 C11orf1 ENSG00000254980 GNG5P3 ALG9-IT1
GH11G111833 1.1 ENCODE dbSUPER 0.4 -6.5 -6456 3.8 SOX13 CTCF PKNOX1 MAX CEBPG FEZF1 EBF1 RAD21 YY1 ZNF121 PPP2R1B ALG9-IT1 GNG5P3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ALG9-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ALG9-IT1 Gene

111,817,214 bp from pter
111,829,212 bp from pter
11,999 bases
Minus strand

Genomic View for ALG9-IT1 Gene

Genes around ALG9-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALG9-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALG9-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ALG9-IT1 Gene

Proteins for ALG9-IT1 Gene

Post-translational modifications for ALG9-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALG9-IT1 Gene

Domains & Families for ALG9-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ALG9-IT1 Gene

Function for ALG9-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALG9-IT1 Gene

Localization for ALG9-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ALG9-IT1 Gene

Pathways & Interactions for ALG9-IT1 Gene

SuperPathways for ALG9-IT1 Gene

No Data Available

Interacting Proteins for ALG9-IT1 Gene

Gene Ontology (GO) - Biological Process for ALG9-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for ALG9-IT1 Gene

Drugs & Compounds for ALG9-IT1 Gene

No Compound Related Data Available

Transcripts for ALG9-IT1 Gene

mRNA/cDNA for ALG9-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ALG9-IT1 Gene

No ASD Table

Relevant External Links for ALG9-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ALG9-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ALG9-IT1 Gene

genes like me logo Genes that share expression patterns with ALG9-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALG9-IT1 Gene

Orthologs for ALG9-IT1 Gene

Evolution for ALG9-IT1 Gene

Gene Tree for ALG9-IT1 (if available)
Gene Tree for ALG9-IT1 (if available)

No data available for Orthologs for ALG9-IT1 Gene

Paralogs for ALG9-IT1 Gene

No data available for Paralogs for ALG9-IT1 Gene

Variants for ALG9-IT1 Gene

Relevant External Links for ALG9-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ALG9-IT1 Gene

Disorders for ALG9-IT1 Gene

No disorders were found for ALG9-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ALG9-IT1 Gene

Publications for ALG9-IT1 Gene

No publications were found for ALG9-IT1 Gene.

Products for ALG9-IT1 Gene

Sources for ALG9-IT1 Gene

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