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Aliases for ALG9-IT1 Gene

Subcategory (RNA class) for ALG9-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ALG9-IT1 Gene

  • ALG9 Intronic Transcript 1 2 3 5
  • ALG9 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ALG9-IT1 Gene

Previous GeneCards Identifiers for ALG9-IT1 Gene

  • GC00U933848
  • GC11M111688

Summaries for ALG9-IT1 Gene

GeneCards Summary for ALG9-IT1 Gene

ALG9-IT1 (ALG9 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ALG9-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALG9-IT1 Gene

Genomics for ALG9-IT1 Gene

Regulatory Elements for ALG9-IT1 Gene

Enhancers for ALG9-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H111841 1.4 Ensembl ENCODE dbSUPER 0.4 -12.3 -12298 0 HDAC1 ELF3 ATF1 RB1 INSM2 ARID4B FEZF1 ZNF2 RAD21 YY1 ALG9-IT1 GNG5P3
GH11H111828 0.8 dbSUPER 0.7 -0.5 -534 1 PKNOX1 TBL1XR1 BACH1 BMI1 EBF1 BATF ATF7 RUNX3 IKZF2 CREM SIK2 C11orf88 MIR34B MIR34C BTG4 HSPB2 HSPB2-C11orf52 C11orf52 CRYAB ENSG00000254980
GH11H111839 1.2 ENCODE dbSUPER 0.4 -10.9 -10924 0 ELF3 FOXA2 ARID4B DMAP1 RAD21 RARA YY1 CREM MIXL1 THAP11 ALG9-IT1 GNG5P3
GH11H111818 1.1 Ensembl ENCODE dbSUPER 0.4 +9.6 9640 2 PKNOX1 ETV1 ZNF175 CEBPG NR2F2 GABPA POLR2A FOXP2 ZNF584 NR2C2 PPP2R1B ALG9-IT1 ENSG00000254990
GH11H111844 1.1 Ensembl ENCODE dbSUPER 0.4 -17.2 -17154 3 PKNOX1 CEBPB MAX FEZF1 JUND POLR2A FOS MAFK MYC SP7 PPP2R1B ALG9 SIK2 FDXACB1 C11orf1 ENSG00000254980 ALG9-IT1 GNG5P3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ALG9-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ALG9-IT1 Gene

Chromosome:
11
Start:
111,817,214 bp from pter
End:
111,829,212 bp from pter
Size:
11,999 bases
Orientation:
Minus strand

Genomic View for ALG9-IT1 Gene

Genes around ALG9-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALG9-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALG9-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ALG9-IT1 Gene

Proteins for ALG9-IT1 Gene

Post-translational modifications for ALG9-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALG9-IT1 Gene

Domains & Families for ALG9-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ALG9-IT1 Gene

Function for ALG9-IT1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for ALG9-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALG9-IT1 Gene

Localization for ALG9-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALG9-IT1 Gene

Pathways & Interactions for ALG9-IT1 Gene

SuperPathways for ALG9-IT1 Gene

No Data Available

Interacting Proteins for ALG9-IT1 Gene

Gene Ontology (GO) - Biological Process for ALG9-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ALG9-IT1 Gene

Drugs & Compounds for ALG9-IT1 Gene

No Compound Related Data Available

Transcripts for ALG9-IT1 Gene

mRNA/cDNA for ALG9-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for ALG9-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for ALG9-IT1 Gene

No ASD Table

Relevant External Links for ALG9-IT1 Gene

GeneLoc Exon Structure for
ALG9-IT1
ECgene alternative splicing isoforms for
ALG9-IT1

Expression for ALG9-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ALG9-IT1 Gene

genes like me logo Genes that share expression patterns with ALG9-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALG9-IT1 Gene

Orthologs for ALG9-IT1 Gene

Evolution for ALG9-IT1 Gene

ENSEMBL:
Gene Tree for ALG9-IT1 (if available)
TreeFam:
Gene Tree for ALG9-IT1 (if available)

No data available for Orthologs for ALG9-IT1 Gene

Paralogs for ALG9-IT1 Gene

No data available for Paralogs for ALG9-IT1 Gene

Variants for ALG9-IT1 Gene

Relevant External Links for ALG9-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALG9-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ALG9-IT1 Gene

Disorders for ALG9-IT1 Gene

No disorders were found for ALG9-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ALG9-IT1 Gene

Publications for ALG9-IT1 Gene

No publications were found for ALG9-IT1 Gene.

Products for ALG9-IT1 Gene

Sources for ALG9-IT1 Gene

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