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Aliases for ALG9-IT1 Gene

Subcategory (RNA class) for ALG9-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for ALG9-IT1 Gene

  • ALG9 Intronic Transcript 1 2 3 5
  • ALG9 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ALG9-IT1 Gene

Previous GeneCards Identifiers for ALG9-IT1 Gene

  • GC00U933848
  • GC11M111688

Summaries for ALG9-IT1 Gene

GeneCards Summary for ALG9-IT1 Gene

ALG9-IT1 (ALG9 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALG9-IT1 Gene

Genomics for ALG9-IT1 Gene

Regulatory Elements for ALG9-IT1 Gene

Enhancers for ALG9-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F111841 1.1 Ensembl ENCODE 0.4 -12.3 -12298 0.7 ELF3 ATF1 INSM2 ARID4B FEZF1 ZNF2 RAD21 RFX5 GATA2 CREM ALG9-IT1 GNG5P3
GH11F111818 0.9 Ensembl ENCODE 0.4 +9.6 9640 2.8 ZNF146 ETV1 CEBPB ZNF175 GABPA NR2F2 JUND ATF3 PBX2 ZNF547 PPP2R1B ALG9-IT1 ENSG00000254990
GH11F111839 0.9 ENCODE 0.4 -10.9 -10924 0.7 ELF3 ARID4B DMAP1 RAD21 RARA YY1 CREM MIXL1 THAP11 CEBPB ALG9-IT1 GNG5P3
GH11F111793 1.1 FANTOM5 ENCODE 0.3 +34.1 34050 3.7 SAP130 INSM2 ARID4B FEZF1 YY1 ZNF316 ZNF366 ZNF600 CREM MAFK PPP2R1B ALG9 LAYN BCO2 SIK2 ENSG00000254990 ALG9-IT1
GH11F111833 0.8 ENCODE 0.4 -6.5 -6456 3.8 SOX13 CTCF PKNOX1 FEZF1 CEBPG EBF1 RAD21 YY1 ZNF121 HNF4G PPP2R1B ALG9-IT1 GNG5P3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ALG9-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ALG9-IT1 Gene

111,817,214 bp from pter
111,829,212 bp from pter
11,999 bases
Minus strand

Genomic View for ALG9-IT1 Gene

Genes around ALG9-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALG9-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALG9-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ALG9-IT1 Gene

Proteins for ALG9-IT1 Gene

Post-translational modifications for ALG9-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALG9-IT1 Gene

Domains & Families for ALG9-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ALG9-IT1 Gene

Function for ALG9-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALG9-IT1 Gene

Localization for ALG9-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ALG9-IT1 Gene

Pathways & Interactions for ALG9-IT1 Gene

SuperPathways for ALG9-IT1 Gene

No Data Available

Interacting Proteins for ALG9-IT1 Gene

Gene Ontology (GO) - Biological Process for ALG9-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for ALG9-IT1 Gene

Transcripts for ALG9-IT1 Gene

mRNA/cDNA for ALG9-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ALG9-IT1 Gene

No ASD Table

Relevant External Links for ALG9-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ALG9-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ALG9-IT1 Gene

genes like me logo Genes that share expression patterns with ALG9-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ALG9-IT1 Gene

Orthologs for ALG9-IT1 Gene

Evolution for ALG9-IT1 Gene

Gene Tree for ALG9-IT1 (if available)
Gene Tree for ALG9-IT1 (if available)

No data available for Orthologs for ALG9-IT1 Gene

Paralogs for ALG9-IT1 Gene

No data available for Paralogs for ALG9-IT1 Gene

Variants for ALG9-IT1 Gene

Relevant External Links for ALG9-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ALG9-IT1 Gene

Disorders for ALG9-IT1 Gene

No disorders were found for ALG9-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ALG9-IT1 Gene

Publications for ALG9-IT1 Gene

No publications were found for ALG9-IT1 Gene.

Products for ALG9-IT1 Gene

Sources for ALG9-IT1 Gene

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