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Aliases for ALG3P1 Gene

Aliases for ALG3P1 Gene

  • ALG3, Alpha-1,3- Mannosyltransferase Pseudogene 1 2 3 5

External Ids for ALG3P1 Gene

Summaries for ALG3P1 Gene

GeneCards Summary for ALG3P1 Gene

ALG3P1 (ALG3, Alpha-1,3- Mannosyltransferase Pseudogene 1) is a Pseudogene. Diseases associated with ALG3P1 include Congenital Disorder Of Glycosylation, Type Id.

Additional gene information for ALG3P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALG3P1 Gene

Genomics for ALG3P1 Gene

Regulatory Elements for ALG3P1 Gene

Enhancers for ALG3P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H005359 1.2 FANTOM5 ENCODE 0.4 +16.1 16079 2 FOXA2 MLX ARID4B DMAP1 YY1 MXD4 REST MIER2 KAT8 NFIL3 ALG3P1 ENSG00000250866
GH05H005349 1.6 FANTOM5 Ensembl ENCODE 0.3 +25.8 25840 2 PKNOX1 FOXA2 ATF1 FEZF1 GLIS2 ELK1 ATF7 FOS SMARCB1 ZNF518A ICE1 ALG3P1 ENSG00000250866
GH05H005339 1.3 Ensembl ENCODE 0.3 +36.4 36397 1 SIN3A FEZF1 ZNF2 ZNF143 FOS DEK SP3 REST SMARCB1 ZNF610 LINC02145 ICE1 ALG3P1 ENSG00000250866
GH05H005334 1.2 Ensembl ENCODE 0.3 +40.8 40794 2 ZNF133 FEZF1 GLI4 FOS DEK SP3 TSHZ1 MIER3 MAFF SMARCA4 ICE1 ALG3P1 ENSG00000250866
GH05H005373 0.5 Ensembl 0.7 +2.7 2744 0 FOSL1 TCF12 RFX1 ATF1 TAL1 ALG3P1 ENSG00000250866
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ALG3P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ALG3P1 Gene

Chromosome:
5
Start:
5,375,632 bp from pter
End:
5,376,844 bp from pter
Size:
1,213 bases
Orientation:
Minus strand

Genomic View for ALG3P1 Gene

Genes around ALG3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALG3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALG3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALG3P1 Gene

Proteins for ALG3P1 Gene

Post-translational modifications for ALG3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALG3P1 Gene

Domains & Families for ALG3P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ALG3P1 Gene

Function for ALG3P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALG3P1 Gene

Localization for ALG3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALG3P1 Gene

Pathways & Interactions for ALG3P1 Gene

SuperPathways for ALG3P1 Gene

No Data Available

Interacting Proteins for ALG3P1 Gene

Gene Ontology (GO) - Biological Process for ALG3P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ALG3P1 Gene

Drugs & Compounds for ALG3P1 Gene

No Compound Related Data Available

Transcripts for ALG3P1 Gene

mRNA/cDNA for ALG3P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ALG3P1 Gene

No ASD Table

Relevant External Links for ALG3P1 Gene

GeneLoc Exon Structure for
ALG3P1
ECgene alternative splicing isoforms for
ALG3P1

Expression for ALG3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ALG3P1 Gene

mRNA differential expression in normal tissues according to GTEx for ALG3P1 Gene

This gene is overexpressed in Brain - Cerebellum (x8.4), Brain - Cerebellar Hemisphere (x6.9), and Testis (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of ALG3P1 Gene:

ALG3P1
genes like me logo Genes that share expression patterns with ALG3P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALG3P1 Gene

Orthologs for ALG3P1 Gene

Evolution for ALG3P1 Gene

ENSEMBL:
Gene Tree for ALG3P1 (if available)
TreeFam:
Gene Tree for ALG3P1 (if available)

No data available for Orthologs for ALG3P1 Gene

Paralogs for ALG3P1 Gene

No data available for Paralogs for ALG3P1 Gene

Variants for ALG3P1 Gene

Relevant External Links for ALG3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALG3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ALG3P1 Gene

Disorders for ALG3P1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ALG3P1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
congenital disorder of glycosylation, type id
  • alg3-cdg
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ALG3P1: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ALG3P1 Gene

Publications for ALG3P1 Gene

  1. An activated 5' cryptic splice site in the human ALG3 gene generates a premature termination codon insensitive to nonsense-mediated mRNA decay in a new case of congenital disorder of glycosylation type Id (CDG-Id). (PMID: 15108280) Denecke J … Marquardt T (Human mutation 2004) 3 60

Products for ALG3P1 Gene

Sources for ALG3P1 Gene

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