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Aliases for ALG1L9P Gene

Aliases for ALG1L9P Gene

  • Asparagine-Linked Glycosylation 1-Like 9, Pseudogene 2 3 5

External Ids for ALG1L9P Gene

Previous GeneCards Identifiers for ALG1L9P Gene

  • GC11M071513

Summaries for ALG1L9P Gene

GeneCards Summary for ALG1L9P Gene

ALG1L9P (Asparagine-Linked Glycosylation 1-Like 9, Pseudogene) is a Pseudogene.

Additional gene information for ALG1L9P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALG1L9P Gene

Genomics for ALG1L9P Gene

Regulatory Elements for ALG1L9P Gene

Enhancers for ALG1L9P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H071813 0.8 ENCODE 0.7 -0.1 -127 0 RB1 SIN3A RAD21 GLIS2 ZNF143 SMARCA5 ZNF654 REST KAT8 ZNF217 FAM86C1 ALG1L9P ENSG00000248671
GH11H071799 1 Ensembl ENCODE 0.4 +13.9 13852 1 ELF3 CTCF RB1 ETV1 RAD21 TEAD3 CC2D1A CTBP1 SCRT2 SMC3 FAM86C1 ALG1L9P
GH11H071793 0.6 ENCODE 0.4 +19.5 19547 2 CTCF MXI1 ZNF687 RFX1 SIN3A USF2 MNT RFX5 CTBP1 FAM86C1 ALG1L9P
GH11H071792 0.7 Ensembl 0.3 +21.1 21058 0 SMARCA5 CTCF MAZ ZNF654 PKNOX1 TRIM22 SIN3A ZNF76 MNT RAD21 FAM86C1 ALG1L9P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ALG1L9P on UCSC Golden Path with GeneCards custom track

Promoters for ALG1L9P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000041615 159 1000 CTCF KLF1 RB1 ETV1 SIN3A RAD21 CC2D1A GLIS2 CTBP1 POLR2A

Genomic Location for ALG1L9P Gene

Chromosome:
11
Start:
71,794,363 bp from pter
End:
71,813,859 bp from pter
Size:
19,497 bases
Orientation:
Minus strand

Genomic View for ALG1L9P Gene

Genes around ALG1L9P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALG1L9P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALG1L9P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALG1L9P Gene

Proteins for ALG1L9P Gene

Post-translational modifications for ALG1L9P Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALG1L9P Gene

Domains & Families for ALG1L9P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ALG1L9P Gene

Function for ALG1L9P Gene

Phenotypes From GWAS Catalog for ALG1L9P Gene

Phenotypes for ALG1L9P Gene

GenomeRNAi human phenotypes for ALG1L9P:
genes like me logo Genes that share phenotypes with ALG1L9P: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALG1L9P Gene

Localization for ALG1L9P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALG1L9P Gene

Pathways & Interactions for ALG1L9P Gene

SuperPathways for ALG1L9P Gene

No Data Available

Interacting Proteins for ALG1L9P Gene

Gene Ontology (GO) - Biological Process for ALG1L9P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ALG1L9P Gene

Drugs & Compounds for ALG1L9P Gene

No Compound Related Data Available

Transcripts for ALG1L9P Gene

mRNA/cDNA for ALG1L9P Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ALG1L9P Gene

Asparagine-linked glycosylation 1-like 9, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ALG1L9P Gene

No ASD Table

Relevant External Links for ALG1L9P Gene

GeneLoc Exon Structure for
ALG1L9P
ECgene alternative splicing isoforms for
ALG1L9P

Expression for ALG1L9P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ALG1L9P Gene

NURSA nuclear receptor signaling pathways regulating expression of ALG1L9P Gene:

ALG1L9P

SOURCE GeneReport for Unigene cluster for ALG1L9P Gene:

Hs.657094
genes like me logo Genes that share expression patterns with ALG1L9P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALG1L9P Gene

Orthologs for ALG1L9P Gene

Evolution for ALG1L9P Gene

ENSEMBL:
Gene Tree for ALG1L9P (if available)
TreeFam:
Gene Tree for ALG1L9P (if available)

No data available for Orthologs for ALG1L9P Gene

Paralogs for ALG1L9P Gene

No data available for Paralogs for ALG1L9P Gene

Variants for ALG1L9P Gene

Sequence variations from dbSNP and Humsavar for ALG1L9P Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000153538 -- 71,794,974(+) CCATC(C/G/T)GCAAG intron-variant, nc-transcript-variant
rs1000209547 -- 71,813,569(+) CCCCG(C/T)GCCAC nc-transcript-variant, downstream-variant-500B
rs1000781519 -- 71,805,944(+) ATTAG(A/G)CATCA intron-variant
rs1000989538 -- 71,810,531(+) AACCC(C/T)AGGAC intron-variant, nc-transcript-variant
rs1001215433 -- 71,812,571(+) ACCAG(A/G)AAGTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ALG1L9P Gene

Variant ID Type Subtype PubMed ID
dgv1222n100 CNV gain 25217958
dgv1223n100 CNV gain 25217958
dgv1224n100 CNV gain 25217958
dgv223e199 CNV deletion 23128226
esv25167 CNV gain 19812545
esv2744758 CNV deletion 23290073
esv2759836 CNV gain+loss 17122850
esv2760190 CNV loss 21179565
esv2761682 CNV gain 21179565
esv3892025 CNV gain 25118596
nsv1045511 CNV loss 25217958
nsv1127207 CNV deletion 24896259
nsv428262 CNV gain+loss 18775914
nsv482161 CNV gain 20164927
nsv832205 CNV gain 17160897
nsv8837 CNV gain+loss 18304495
nsv951036 CNV deletion 24416366
nsv972041 CNV duplication 23825009

Relevant External Links for ALG1L9P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALG1L9P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ALG1L9P Gene

Disorders for ALG1L9P Gene

Relevant External Links for ALG1L9P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ALG1L9P

No disorders were found for ALG1L9P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALG1L9P Gene

Publications for ALG1L9P Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for ALG1L9P Gene

Sources for ALG1L9P Gene

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