Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ALDH1L2 Gene

protein-coding   GIFtS: 55
GCID: GC12M105417

aldehyde dehydrogenase 1 family, member L2

 Explore 3 diseases affiliated with
ALDH1L2 via our new
 Human Malady Compendium 
Biological research products
for ALDH1L2
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Aldehyde Dehydrogenase 1 Family, Member L21 2     10-Formyltetrahydrofolate Dehydrogenase ALDH1L22
MtFDH1     Aldehyde Dehydrogenase Family 1 Member L2, Mitochondrial2
Mitochondrial 10-FTHFDH2 3     Mitochondrial 10-Formyltetrahydrofolate Dehydrogenase2
EC 1.5.1.63 8     Probable 10-Formyltetrahydrofolate Dehydrogenase ALDH1L22
FLJ385081     Aldehyde Dehydrogenase Family 1 Member L23

External Ids:    HGNC: 267771   Entrez Gene: 1604282   Ensembl: ENSG000001360107   OMIM: 6135845   UniProtKB: Q3SY693   
ORGUL members:         
NONCODE:n407999    

Export aliases for ALDH1L2 gene to outside databases

Previous GC identifers: GC12M103921 GC12M102472


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ALDH1L2:
This gene encodes a member of both the aldehyde dehydrogenase superfamily and the formyl transferase superfamily. This
member is the mitochondrial form of 10-formyltetrahydrofolate dehydrogenase (FDH), which converts
10-formyltetrahydrofolate to tetrahydrofolate and CO2 in an NADP(+)-dependent reaction, and plays an essential role in
the distribution of one-carbon groups between the cytosolic and mitochondrial compartments of the cell. Alternatively
spliced transcript variants have been found for this gene.(provided by RefSeq, Oct 2010)

Gene Wiki entry for ALDH1L2


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000012.11  NC_018923.1  NT_029419.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ALDH1L2 gene promoter:
         Bach1   AhR   Sp1   Ik-2   CUTL1   Arnt   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidALDH1L2 promoter sequence
   Search SABiosciences Chromatin IP Primers for ALDH1L2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ALDH1L2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q23.3   Ensembl cytogenetic band:  12q23.3   HGNC cytogenetic band: 12q23.3

ALDH1L2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ALDH1L2 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M105417:  view genomic region     (about GC identifiers)

Start:
105,413,562 bp from pter      End:
105,478,355 bp from pter
Size:
64,794 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: AL1L2_HUMAN, Q3SY69 (See protein sequence)
Recommended Name: Mitochondrial 10-formyltetrahydrofolate dehydrogenase  
Size: 923 amino acids; 101746 Da
Subcellular location: Mitochondrion
Sequence caution: Sequence=AAI03936.1; Type=Erroneous translation; Note=Wrong choice of CDS;
Secondary accessions: Q3SY68 Q68D62 Q6AI55 Q8N922
Alternative splicing: 3 isoforms:  Q3SY69-1   Q3SY69-2   Q3SY69-3   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ALDH1L2: NX_Q3SY69

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q3SY69

  • 4/14 DME Specific Peptides for ALDH1L2 (Q3SY69) (see all 14)
     TINPTDG  NEDVYMA  EDSTDFFK  YNRFLFPEG 

    ALDH1L2 Protein expression data from MOPED and PaxDb:    About this image 
    ALDH1L2 Protein Expression
    REFSEQ proteins: NP_001029345.2  
    ENSEMBL proteins: 
     ENSP00000258494   ENSP00000447538   ENSP00000447464   ENSP00000389608  

    Human Recombinant Protein Products for ALDH1L2: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    Browse OriGene Protein Over-expression Lysates
    OriGene Custom Protein Services for ALDH1L2 
    GenScript Custom Purified and Recombinant Proteins Services for ALDH1L2
    Novus Biologicals ALDH1L2 Protein
    Novus Biologicals ALDH1L2 Lysate
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for ALDH1L2

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005739mitochondrion IDA--

    ALDH1L2 for ontologies           About GeneDecksing



    ALDH1L2 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for ALDH1L2 
    GenScript Custom Superior Antibodies Services for ALDH1L2
    Novus Biologicals ALDH1L2 Antibodies
    Abcam antibodies for ALDH1L2 
    Uscn Antibodies for ALDH1L2
    Search ThermoFisher Antibodies for ALDH1L2

    Assay Products for ALDH1L2: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for ALDH1L2
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for ALDH1L2


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ALDH1L2 for domains           About GeneDecksing

    5/12 InterPro domains/families (see all 12):
     IPR001555 GART_AS
     IPR005793 Formyl_trans_C
     IPR016162 Ald_DH_N
     IPR006162 PPantetheine_attach_site
     IPR016163 Ald_DH_C

    Graphical View of Domain Structure for InterPro Entry Q3SY69

    ProtoNet protein and cluster: Q3SY69

    1 Blocks protein family: IPB005793 Formyl transferase

    UniProtKB/Swiss-Prot: AL1L2_HUMAN, Q3SY69
    Similarity: In the N-terminal section; belongs to the GART family
    Similarity: In the C-terminal section; belongs to the aldehyde dehydrogenase family. ALDH1L subfamily
    Similarity: Contains 1 acyl carrier domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: AL1L2_HUMAN, Q3SY69
    Catalytic activity: 10-formyltetrahydrofolate + NADP(+) + H(2)O = tetrahydrofolate + CO(2) + NADPH

         Enzyme Number (IUBMB): EC 1.5.1.61 2

         Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008168methyltransferase activity IEA--
    GO:0016155formyltetrahydrofolate dehydrogenase activity IEA--
    GO:0016620oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA--
    GO:0016742hydroxymethyl-, formyl- and related transferase activity IEA--
    GO:0031177phosphopantetheine binding ----
         
    ALDH1L2 for ontologies           About GeneDecksing


    Phenotypes:
         3 GenomeRNAi human phenotypes for ALDH1L2:
     Decreased NANOG protein expres  Decreased OCT4 protein express  Decreased POU5F1-GFP protein e 

    Animal Models:
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for ALDH1L2 

    miRNA
    Products:
        
    OriGene 3'-UTR Clone: ALDH1L2
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ALDH1L2
    8/40 QIAGEN miScript miRNA Assays for microRNAs that regulate ALDH1L2 (see all 40):
    hsa-miR-194* hsa-miR-361-5p hsa-miR-607 hsa-miR-376b hsa-miR-128 hsa-miR-3921 hsa-miR-3171 hsa-miR-10b*
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ALDH1L2 (see all 4)
    OriGene shRNA RFP: ALDH1L2
    OriGene siRNA: ALDH1L2
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ALDH1L2
    Sirion Biotech Custom design and validation of potent shRNA sequences against ALDH1L2 

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for ALDH1L2
    Sirion Biotech Customized adenovirus for overexpression of ALDH1L2 
    Sirion Biotech Customized adenovirus for potent knockdown of ALDH1L2

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ALDH1L2 (see all 2)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ALDH1L2
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: ALDH1L2 (NM_001034173)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ALDH1L2
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ALDH1L2 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for ALDH1L2
    Search LifeMap BioReagents cell lines for ALDH1L2
    Sirion Biotech Customized stable knockdown cell line services for ALDH1L2 
    Sirion Biotech Customized inducible knockdown cell line services for ALDH1L2
    Sirion Biotech Customized stable overexpressing cell line services for ALDH1L2
    Sirion Biotech Customized inducible overexpressing cell line services for ALDH1L2

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ALDH1L2


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1One Carbon Metabolism
    One carbon pool by folate0.52

    Pathway sources
    See GeneCards unified pathways
    Show all pathways



    1         Kegg Pathway  (Kegg details for ALDH1L2):
        One carbon pool by folate


    ALDH1L2 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ALDH1L2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 11)

    5/242 Interacting proteins for ALDH1L2 (Q3SY692, 3 ENSP000002584944) via UniProtKB, MINT, STRING, and/or I2D (see all 242)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ICT1Q141972, 3, ENSP000003015854MINT-8079030 I2D: score=1 STRING: ENSP00000301585
    SHMT2P348972, ENSP000003336674MINT-8079030 STRING: ENSP00000333667
    C12orf44Q9BSB43I2D: score=1 
    CAMKK2Q96RR43I2D: score=1 
    WIPI2Q9Y4P83I2D: score=1 
    About this table

    Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006730one-carbon metabolic process IEA--
    GO:0009058biosynthetic process IEA--
    GO:000925810-formyltetrahydrofolate catabolic process IEA--

    ALDH1L2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ALDH1L2

    3 HMDB Compounds for ALDH1L2    About this table
    CompoundSynonyms CAS #PubMed Ids
    NADPAdenine-nicotinamide dinucleotide phosphate (see all 18)53-59-8--
    NADPH2'-(dihydrogen phosphate) 5'-(trihydrogen pyrophosphate) Adenosine 5'-ester with 1,4-dihydro-1-b-D-ribofuranosylnicotinamide (see all 23)53-57-6--
    Pantetheine 4'-phosphate4'-Phosphopantetheine (see all 8)2226-71-3--
    Search CenterWatch for drugs/clinical trials and news about ALDH1L2 / AL1L2 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ALDH1L2 gene: 
    NM_001034173.3  

    Unigene Cluster for ALDH1L2:

    Aldehyde dehydrogenase 1 family, member L2
    Hs.42572  [show with all ESTs]
    Unigene Representative Sequence: NM_001034173
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000549335(uc009zuo.3) ENST00000258494(uc009zup.3 uc001tlc.3)
    ENST00000552270 ENST00000548418 ENST00000552427 ENST00000424857

    miRNA
    Products:
         
    OriGene 3'-UTR Clone: ALDH1L2
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ALDH1L2
    8/40 QIAGEN miScript miRNA Assays for microRNAs that regulate ALDH1L2 (see all 40):
    hsa-miR-194* hsa-miR-361-5p hsa-miR-607 hsa-miR-376b hsa-miR-128 hsa-miR-3921 hsa-miR-3171 hsa-miR-10b*
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ALDH1L2 (see all 4)
    OriGene shRNA RFP: ALDH1L2
    OriGene siRNA: ALDH1L2
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ALDH1L2
    Sirion Biotech Custom design and validation of potent shRNA sequences against ALDH1L2 
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ALDH1L2 (see all 2)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ALDH1L2
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: ALDH1L2 (NM_001034173)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ALDH1L2
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ALDH1L2 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ALDH1L2
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat ALDH1L2
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ALDH1L2
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ALDH1L2

    Additional cDNA sequence: 

    AF086109.1 AK094088.1 AK095827.1 AK300373.1 BC103934.1 BX537599.1 CR749561.1 NR_027752.1 

    4 DOTS entries:

    DT.308648  DT.95196886  DT.121210699  DT.121210712 

    2 AceView cDNA sequences:

    BX497818 CN483502 

    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for ALDH1L2    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20a · 20b
    SP1:                                                                                                                              
    SP2:                                                                                                                    -         


    ECgene alternative splicing isoforms for ALDH1L2

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ALDH1L2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --
    ALDH1L2 Expression
    About this image

    ALDH1L2 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    LungRespiratory BronchiolesBasal CellsLung
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 3 LifeMap Cells 
    NameCategory
    PureStem™ mesenchymal Progenitor SK11 (Embryonic Progenitor Cell)Adipose, Bone, Cartilage
    PureStem™ mesenchymal progenitor 7SMOO32 (Embryonic Progenitor Cell)Adipose, Bone, Cartilage
    Line H9 (WA09) (Embryonic Stem Cell)Early Embryo, Inner Cell Mass

    See ALDH1L2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ALDH1L2

    SOURCE GeneReport for Unigene cluster: Hs.42572

    UniProtKB/Swiss-Prot: AL1L2_HUMAN, Q3SY69
    Tissue specificity: Highly expressed in pancreas, heart, brain and skeletal muscle

        SABiosciences Custom PCR Arrays for ALDH1L2
    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ALDH1L2
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat ALDH1L2
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ALDH1L2
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ALDH1L2
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ALDH1L2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the last universal common ancestor (LUCA).

    Orthologs for ALDH1L2 gene from 9/28 species (see all 28)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves LOC1008573601 mitochondrial 10-formyltetrahydrofolate dehydrogenase-like 78.09(n)
    83.84(a)
      100857360  XM_003640425.1  XP_003640473.1 
    lizard
    (Anolis carolinensis)
    Reptilia ALDH1L26
    --
    84(a)
    1 ↔ 1
    5(18710017-18740392)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia Str.26042 Transcribed sequence with moderate similarity to protein more 75.13(n)    142001957 
    zebrafish
    (Danio rerio)
    Actinopterygii aldh1l21 aldehyde dehydrogenase 1 family, member L2 72.81(n)
    80.61(a)
      100333269  XM_002661372.2  XP_002661418.2 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG86651 CG8665 58.75(n)
    59.2(a)
      35407  NM_136263.1  NP_610107.1 
    worm
    (Caenorhabditis elegans)
    Secernentea alh-36
    ALdehyde deHydrogenase family member (alh-3)
    59(a)
    1 → many
    IV(11022580-11025851)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons ALDH10A96
    ALDH10A86
    betaine aldehyde dehydrogenase 1
    36(a)
    36(a)
    possible ortholog
    possible ortholog
    3(17786140-17790008)
    1(28139009-28142744)
    rice
    (Oryza sativa)
    Liliopsida --
    SK26
    aldehyde dehydrogenase, putative, expressed
    36(a)
    35(a)
    possible ortholog
    possible ortholog
    4(22986281-22991224)
    8(20377081-20383348)
    E. coli
    (Escherichia coli)
    Gamma proteobacteria aldB6
    aldehyde dehydrogenase B
    34(a)
    possible ortholog
    Chromosome(3752996-3754534)


    ENSEMBL Gene Tree for ALDH1L2 (if available)
    TreeFam Gene Tree for ALDH1L2 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ALDH1L2 gene
    ALDH1A12  ALDH1A22  ENSG000002577672  ALDH1B12  ALDH7A12  ALDH22  ALDH16A12  ALDH8A12  
    ALDH9A12  ALDH1A32  ALDH1L12  
    11 SIMAP similar genes for ALDH1L2 using alignment to 2 protein entries:     AL1L2_HUMAN (see all proteins):
    ALDH1L1    ALDH1A2    ALDH1A1    ALDH1B1    ALDH2    ALDH1A3
    ALDH5A1    ALDH7A1    ALDH9A1    ALDH6A1    ALDH8A1

    ALDH1L2 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for ALDH1L2
    PGOHUM00000239380


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1385 NCBI SNPs in ALDH1L2 are shown (see all 1385    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 12 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs765700191,2
    --102472585(+) TTTTGT/AGACAT 2 -- ds50012Minor allele frequency- A:0.11CSA WA 119
    rs793972441,2
    --102472802(+) AGATAC/TCATCT 2 -- ut31 nc-transcript-variant0--------
    rs11295591,2
    C,F,H--102473123(-) NNNNTG/AGAAAT 2 -- ut31 nc-transcript-variant7Minor allele frequency- A:0.00MN NS EA NA 598
    rs73162901,2
    C,F,H--102473170(+) TTAGTT/CTAACC 2 -- ut31 nc-transcript-variant6Minor allele frequency- C:0.05NS EA CSA WA 536
    rs118358121,2
    C,F,H--102473424(+) acattC/Ataatg 2 -- ut31 nc-transcript-variant5Minor allele frequency- A:0.00NS EA NA 406
    rs760409261,2
    --102473560(+) AAGCAG/TAGTCA 2 -- ut31 nc-transcript-variant0--------
    rs765601341,2
    F--102473587(+) TCAGAT/CGATAT 2 -- ut31 nc-transcript-variant1Minor allele frequency- C:0.06WA 118
    rs18010701,2
    C--102473768(-) CTCTCA/TTCAAG 2 -- ut31 nc-transcript-variant3Minor allele frequency- T:0.14NA WA 240
    rs168911,2
    C,F,H--102473884(-) CTGTCC/ATTATT 2 -- ut31 nc-transcript-variant9Minor allele frequency- A:0.14NS EA NA WA 782
    rs111123121,2
    --102474416(+) CACTGC/TACTGC 2 -- ut31 nc-transcript-variant0--------

    HapMap Linkage Disequilibrium report for ALDH1L2 (105413562 - 105478355 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for ALDH1L2: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ALDH1L2
    DNA2.0 Custom Variant and Variant Library Synthesis for ALDH1L2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ALDH1L2 for disorders           About GeneDecksing

    OMIM gene information: 613584    OMIM disorders: --

    3 diseases for ALDH1L2:    About MalaCards
    retinitis    tuberculosis    mycobacterium tuberculosis

    Human Genome Epidemiology (HuGE) Navigator: ALDH1L2 (2 documents)

    Export disorders for ALDH1L2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ALDH1L2 gene, integrated from 9 sources (see all 13):
    (articles sorted by number of sources associating them with ALDH1L2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. ALDH1L2 is the mitochondrial homolog of 10-formyltetr ahydrofolate dehydrogenase. (PubMed id 20498374)1, 2, 3 Krupenko N.I....Krupenko S.A. (2010)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. Identification and analysis of intermediate size nonc oding RNAs in the human fetal brain. (PubMed id 21789175)1 Yan D....Chen R. (2011)
    4. Enzymatic properties of ALDH1L2, a mitochondrial 10-f ormyltetrahydrofolate dehydrogenase. (PubMed id 21238436)1 Strickland K.C....Krupenko S.A. (2011)
    5. Acyl carrier protein-specific 4'-phosphopantetheinyl transferase activates 10-formyltetrahydrofolate dehydrogenase. (PubMed id 19933275)1 Strickland K.C....Krupenko S.A. (2010)
    6. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
    7. A functional peptidyl-tRNA hydrolase, ICT1, has been recruited into the human mitochondrial ribosome. (PubMed id 20186120)1 Richter R....Chrzanowska-Lightowlers Z.M. (2010)
    8. Genetic variants in nuclear-encoded mitochondrial gen es influence AIDS progression. (PubMed id 20877624)1 Hendrickson S.L....O'Brien S.J. (2010)
    9. Lysine acetylation targets protein complexes and co-regulates major cellular functions. (PubMed id 19608861)2 Choudhary C.... Mann M. (2009)
    10. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (2008)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 160428 HGNC: 26777 AceView: FLJ38508.1 Ensembl:ENSG00000136010 euGenes: HUgn160428
    ECgene: ALDH1L2 Kegg: 160428 H-InvDB: ALDH1L2

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ALDH1L2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ALDH1L2 gene:
    Search GeneIP for patents involving ALDH1L2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for ALDH1L2  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ALDH1L2   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ALDH1L2  
     Browse OriGene Protein Over-expression Lysates   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for ALDH1L2   OriGene 3'-UTR Clone for ALDH1L2  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ALDH1L2   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ALDH1L2  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for ALDH1L2   OriGene Custom Protein Services for ALDH1L2  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ALDH1L2
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ALDH1L2
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ALDH1L2
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ALDH1L2
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ALDH1L2
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ALDH1L2
     GenScript Custom Purified and Recombinant Proteins Services for ALDH1L2 GenScript cDNA clones with any tag delivered in your preferred vector for ALDH1L2
     GenScript Custom Assay Services for ALDH1L2 GenScript Custom Superior Antibodies Services for ALDH1L2
     GenScript Custom overexpressing Cell Line Services for ALDH1L2 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in ALDH1L2 promoter
     Search Chromatin IP Primers for ALDH1L2
     RT2 qPCR Primer Assay in human, mouse, rat ALDH1L2
     Search GNC Networks for ALDH1L2
     SABiosciences Custom PCR Arrays for ALDH1L2
     Search Tocris compounds for ALDH1L2
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     ALDH1L2 antibodies
     ALDH1L2 proteins
     ALDH1L2 lysates
     Antibodies for ALDH1L2
     See all of Abcam's Antibodies, Kits and Proteins for ALDH1L2
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     ALDH1L2 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for ALDH1L2
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ALDH1L2
     Browse SwitchGear 3'UTR luciferase reporter plasmids for ALDH1L2
     SwitchGear Promoter luciferase reporter plasmids for ALDH1L2
     Search ThermoFisher Antibodies for ALDH1L2
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ALDH1L2
     inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for ALDH1L2
    Sirion Biotech Customized:
     stable knockdown cell line services for ALDH1L2
     inducible knockdown cell line services for ALDH1L2
     design and validation of potent shRNA sequences against ALDH1L2
     adenovirus for potent knockdown of ALDH1L2
     adenovirus for overexpression of ALDH1L2
     stable overexpressing cell line services for ALDH1L2
     inducible overexpressing cell line services for ALDH1L2
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 13 May 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      ALDH1L2 gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 106 solr: 1.4