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Aliases for ALDH1L1-AS1 Gene

Subcategory (RNA class) for ALDH1L1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ALDH1L1-AS1 Gene

  • ALDH1L1 Antisense RNA 1 2 3 5
  • ALDH1L1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ALDH1L1-AS1 Gene

Previous GeneCards Identifiers for ALDH1L1-AS1 Gene

  • GC00U933474
  • GC03P125823

Summaries for ALDH1L1-AS1 Gene

GeneCards Summary for ALDH1L1-AS1 Gene

ALDH1L1-AS1 (ALDH1L1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALDH1L1-AS1 Gene

Genomics for ALDH1L1-AS1 Gene

Regulatory Elements for ALDH1L1-AS1 Gene

Enhancers for ALDH1L1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F126132 0.7 ENCODE 12.5 +29.4 29353 0.1 CTCF SMC3 RAD21 ALDH1L1-AS1 ALDH1L1 GC03P126153
GH03F125972 0.5 Ensembl 10.9 -131.2 -131240 0.8 CTCF ZNF654 RAD21 ZFP69B ZFHX2 ZNF692 SMC3 EZH2 EGR2 ZNF18 SLC41A3 ALDH1L1-AS1 FAM86JP ROPN1B PIR42058
GH03F126055 0.6 Ensembl ENCODE 10.8 -45.7 -45681 4.1 ELF3 TBP ARID4B ZNF48 ZBTB40 BRCA1 RAD21 RARA ZNF366 RCOR1 ALG1L FAM86JP SLC41A3 ALDH1L1-AS1 OR7E29P ENSG00000248607 LOC105374085
GH03F125186 0.4 Ensembl 6 -916.7 -916739 0.2 SMARCA4 POLR2A RNU6-232P ALDH1L1-AS1 GC03M125183 LOC105374079
GH03F126102 0.2 ENCODE 0.8 -1.0 -968 0.2 ROPN1B ALDH1L1-AS1 SLC41A3
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ALDH1L1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ALDH1L1-AS1 Gene

Chromosome:
3
Start:
126,103,640 bp from pter
End:
126,108,069 bp from pter
Size:
4,430 bases
Orientation:
Plus strand

Genomic View for ALDH1L1-AS1 Gene

Genes around ALDH1L1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALDH1L1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALDH1L1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALDH1L1-AS1 Gene

Proteins for ALDH1L1-AS1 Gene

Post-translational modifications for ALDH1L1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALDH1L1-AS1 Gene

Domains & Families for ALDH1L1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ALDH1L1-AS1 Gene

Function for ALDH1L1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALDH1L1-AS1 Gene

Localization for ALDH1L1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ALDH1L1-AS1 Gene

Pathways & Interactions for ALDH1L1-AS1 Gene

SuperPathways for ALDH1L1-AS1 Gene

No Data Available

Interacting Proteins for ALDH1L1-AS1 Gene

Gene Ontology (GO) - Biological Process for ALDH1L1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ALDH1L1-AS1 Gene

Transcripts for ALDH1L1-AS1 Gene

mRNA/cDNA for ALDH1L1-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ALDH1L1-AS1 Gene

ALDH1L1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ALDH1L1-AS1 Gene

No ASD Table

Relevant External Links for ALDH1L1-AS1 Gene

GeneLoc Exon Structure for
ALDH1L1-AS1
ECgene alternative splicing isoforms for
ALDH1L1-AS1

Expression for ALDH1L1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ALDH1L1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ALDH1L1-AS1 Gene

This gene is overexpressed in Liver (x6.0).

SOURCE GeneReport for Unigene cluster for ALDH1L1-AS1 Gene:

Hs.742339
genes like me logo Genes that share expression patterns with ALDH1L1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ALDH1L1-AS1 Gene

Orthologs for ALDH1L1-AS1 Gene

Evolution for ALDH1L1-AS1 Gene

ENSEMBL:
Gene Tree for ALDH1L1-AS1 (if available)
TreeFam:
Gene Tree for ALDH1L1-AS1 (if available)

No data available for Orthologs for ALDH1L1-AS1 Gene

Paralogs for ALDH1L1-AS1 Gene

No data available for Paralogs for ALDH1L1-AS1 Gene

Variants for ALDH1L1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ALDH1L1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10934744 -- 126,105,539(+) ACGAC(A/C)CCCCT intron-variant
rs111587759 -- 126,103,393(+) ACTGT(C/T)GCAGC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs111776509 -- 126,104,628(+) GGAGA(A/G)GGCAG intron-variant, nc-transcript-variant
rs111877159 -- 126,107,209(+) TGGTC(C/T)TCCAC intron-variant, nc-transcript-variant, reference, synonymous-codon
rs112410557 -- 126,107,009(+) GCGGG(-/GTGTCC)ACGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ALDH1L1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv8545n54 CNV loss 21841781
esv2725864 CNV deletion 23290073
esv7912 OTHER inversion 19470904
nsv1011457 CNV gain 25217958
nsv520037 CNV gain+loss 19592680
nsv524971 CNV loss 19592680
nsv591465 CNV gain 21841781
nsv829716 CNV gain+loss 17160897
nsv955334 CNV deletion 24416366

Relevant External Links for ALDH1L1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALDH1L1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ALDH1L1-AS1 Gene

Disorders for ALDH1L1-AS1 Gene

Relevant External Links for ALDH1L1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ALDH1L1-AS1

No disorders were found for ALDH1L1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALDH1L1-AS1 Gene

Publications for ALDH1L1-AS1 Gene

No publications were found for ALDH1L1-AS1 Gene.

Products for ALDH1L1-AS1 Gene

Sources for ALDH1L1-AS1 Gene

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