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Aliases & Descriptions for ALDH1A1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| ALDC 2, 3 | | ALDH-E1 2, 3 | | ALDH1 2, 3 | | ALDH11 2 | | ALHDII 3 | | EC 1.2.1.36 3 | | MGC2318 2 | | PUMB1 2, 3 | | RALDH1 1, 2 | | RalDH1 3 |
| | | Descriptions |
|---|
| ALDH class 1 2 | | Aldehyde dehydrogenase family 1 member A1 3 | | Aldehyde dehydrogenase, cytosolic 3 | | RALDH 1 3 | | acetaldehyde dehydrogenase 1 2 | | aldehyde dehydrogenase 1 family, member A1 2 | | aldehyde dehydrogenase 1, soluble 2 | | aldehyde dehydrogenase 1A1 2 | | aldehyde dehydrogenase, liver cytosolic 2 | | retinal dehydrogenase 1 2 | | retinaldehyde dehydrogenase 1 2 |
|
| | Search outside databases for aliases for ALDH1A1 genePrevious GC identifers: GC09M066559 GC09M067372 GC09M069085 GC09M070972 GC09M072745 |
Summaries for ALDH1A1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ALDH1A1: This protein belongs to the aldehyde dehydrogenases family of proteins. Aldehyde dehydrogenase is the second enzyme of the major oxidative pathway of alcohol metabolism. Two major liver isoforms of this enzyme, cytosolic and mitochondrial, can be distinguished by their electrophoretic mobilities, kinetic properties, and subcellular localizations. Most Caucasians have two major isozymes, while approximately 50% of Orientals have only the cytosolic isozyme, missing the mitochondrial isozyme. A remarkably higher frequency of acute alcohol intoxication among Orientals than among Caucasians could be related to the absence of the mitochondrial isozyme. This gene encodes a cytosolic isoform, which has a high affinity for aldehydes. [provided by RefSeq] UniProtKB/Swiss-Prot: AL1A1_HUMAN, P00352Function: Binds free retinal and cellular retinol-binding protein-bound retinal. Can convert/oxidize retinaldehyde to retinoic acid (By similarity) |
Genomic Location for ALDH1A1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ALDH1A1 gene 
Entrez Gene cytogenetic band: 9q21.13 Ensembl cytogenetic band: 9q21.13 HGNC cytogenetic band: 9q21ALDH1A1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09M074705:
(about GC identifiers)
Start:
|
74,705,407 bp from pter |
End:
|
74,757,792 bp from pter |
Size:
|
52,386 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000009.10 NT_023935.17
| Proteins for ALDH1A1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: AL1A1_HUMAN, P00352 (See
protein sequence)Recommended Name: Retinal dehydrogenase 1 Size: 501 amino acids; 54862 Da
Subunit: Homotetramer
Subcellular location: Cytoplasm
Secondary accessions: O00768Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000680.2
ENSEMBL proteins: ENSP00000366138 ENSP00000297785
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: ALDH1A1 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ALDH1A1: Assays for ALDH1A1: | Protein
Domains/ Families for ALDH1A1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P00352
ProtoNet protein and cluster: P00352 1 Blocks protein family: IPB002086 Aldehyde dehydrogenase
UniProtKB/Swiss-Prot: AL1A1_HUMAN, P00352Similarity: Belongs to the aldehyde dehydrogenase family | Gene Function for ALDH1A1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000689
Applied Biosystems Silencer® siRNAs for ALDH1A1
Sigma-Aldrich siRNA and siRNA Panels for ALDH1A1  Sigma-Aldrich shRNA for ALDH1A1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000689                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000689                                  untagged cDNA clone in CMV expression vector: NM_000689 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000689
UniProtKB/Swiss-Prot: AL1A1_HUMAN, P00352Function: Binds free retinal and cellular retinol-binding protein-bound retinal. Can convert/oxidize retinaldehyde to retinoic acid (By similarity)Catalytic activity: Retinal + NAD(+) + H(2)O = retinoate + NADHEnzyme Number (IUBMB): EC 1.2.1.36 6 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Aldh1a1):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ALDH1A1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/20 Sigma-Aldrich "Your Favorite Gene" Pathways for ALDH1A1 (Your Favorite Gene powered by Ingenuity) (see all 20
) 
UniProtKB/Swiss-Prot: AL1A1_HUMAN, P00352Pathway: Cofactor metabolism; retinol metabolism Gene Network CentralTM Interacting Genes and Proteins Network for ALDH1A1 
5/17 Interacting proteins for ALDH1A1 (ENSP000002977853) via UniProtKB, MINT, and/or STRING (see all 17
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for ALDH1A1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ALDH1A1 10/16 Novoseek chemical compound relationships for ALDH1A1 gene (see all 16
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| aldophosphamide |
87.28 |
7 |
1610409 (3), 9714700 (2), 9322086 (1), 8654195 (1) |
| 4-hydroxycyclophosphamide |
83.12 |
12 |
9884322 (4), 18496131 (3) |
| retinaldehyde |
82.84 |
16 |
17175089 (3), 1610409 (2), 10559215 (2), 11014218 (1) (see all 8) |
| 4-hydroperoxycyclophosphamide |
79.61 |
7 |
16614850 (2), 9551609 (1), 10773007 (1), 9714700 (1) (see all 5) |
| carboxyphosphamide |
77.17 |
1 |
8654195 (1) |
| propionaldehyde |
65.96 |
1 |
9701494 (1) |
| nad+ |
62.83 |
2 |
15924421 (1), 16878979 (1) |
| mafosfamide |
56.26 |
2 |
8662658 (1), 8654195 (1) |
| chloroacetaldehyde |
55.37 |
1 |
16878979 (1) |
| succinic semialdehyde |
53.18 |
4 |
1610409 (2), 9490025 (1) |
About this table
|
Transcripts for ALDH1A1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000689
Sigma-Aldrich siRNA and siRNA Panels for ALDH1A1  Sigma-Aldrich shRNA for ALDH1A1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000689 REFSEQ mRNAs for ALDH1A1 gene: NM_000689.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000689               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000689                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000689                                  untagged cDNA clone in CMV expression vector: NM_000689  Additional cDNA sequence: AB209821.1 AF003341.1 AK000118.1 AK026641.1 AK293176.1 AK302168.1 AY390731.1 BC001505.2 BT006921.1 CR601139.1 K03000.1 M26761.1 24/32 DOTS entries (see all 32
): DT.100885833 DT.97855829 DT.95145322 DT.91787600 DT.97855826 DT.121156154 DT.121156107 DT.100675525 DT.100039288 DT.100885835 DT.121156167 DT.100885830 DT.100885831 DT.121156121 DT.97855830 DT.100039289 DT.100885834 DT.121156085 DT.121156090 DT.121156092 DT.121156093 DT.121156102 DT.121156162 DT.121156165 24/893 AceView cDNA sequences (see all 893
):CB160652 AI800524 BM716589 F07279 BM705564 BM772990 BM503285 CD244688 BM856105 AA146679 AL713510 AA129143 BQ937897 CD245329 CB134326 NM_000689 BU507957 CR601139 AI912948 F03551 BM758430 AL544572 CB112556 CB161346
highest scoring ESTs for ALDH1A1:AA082508 AA146679 AA305306 AA307608 AA314196 AA325083 AA366920 AF003341 AK000118 AK026641 Unigene Cluster for ALDH1A1: Aldehyde dehydrogenase 1 family, member A1 Hs.76392 [show with all ESTs]Unigene Representative Sequence: NM_000689
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for ALDH1A1
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | · | 5c | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10a | · | 10b | ^ | 11 | ^ | 12 | ^ | 13a | · | 13b | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ALDH1A1
2 Ensembl transcripts including schematic representations: ENST00000376939
ENST00000297785
|
Expression for ALDH1A1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ALDH1A1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ALDH1A1
1 / 2 / 3 3 probe-sets matching ALDH1A1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.76392
Expression variation in blood from EXPOLDB for ALDH1A1 |
Orthologs for ALDH1A1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ALDH1A1 gene from 5/17 species (see all 17
)
About this table Species with no ortholog for ALDH1A1
ENSEMBL Gene Tree for ALDH1A1 | Paralogs for ALDH1A1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ALDH1A1 gene
- ALDH1A22 ALDH1A32
|
SNPs/Variants for ALDH1A1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ALDH1A1 (up to first 250kb)
|
Disorders & Mutations for ALDH1A1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 100640
10/11 Novoseek disease relationships for ALDH1A1 gene (see all 11
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| alcoholism |
53.80 |
5 |
8160299 (1), 14506398 (1), 17286337 (1), 15967764 (1) |
| androgen insensitivity syndrome |
48.63 |
2 |
9166904 (1), 8493922 (1) |
| cancer |
16.05 |
5 |
12174908 (1), 19149630 (1), 19336570 (1), 19276181 (1) |
| parkinson disease |
13.75 |
2 |
14678778 (2) |
| leiomyoma |
13.04 |
1 |
17276435 (1) |
| metabolic disorder |
12.79 |
1 |
9490025 (1) |
| cancer lung |
9.58 |
7 |
19276181 (2), 17111384 (1) |
| tumors |
9.05 |
21 |
11320670 (5), 17974998 (4), 10773007 (1), 12513786 (1) (see all 9) |
| breast cancer metastatic |
8.62 |
8 |
11320670 (3), 9815579 (2) |
| breast cancer |
0.00 |
4 |
11320670 (1), 19149630 (1) |
About this table
Human Gene Mutation Database: ALDH1A1 Genetic Association Database: ALDH1A1 Human Genome Epidemiology Navigator: ALDH1A1 (9 documents)
|
Medical News for ALDH1A1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ALDH1A1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/160 PubMed articles for ALDH1A1 gene (see all 160
):- Evaluation of aldehyde dehydrogenase 1 promoter polymorphisms identified in human populations. (PubMed id 14506398)1, 3, 6 Spence J.P....Carr L.G. (2003)
- Association of ALDH1 promoter polymorphisms with alcohol-related phenotypes in southwest California Indians. (PubMed id 15597079)1, 3, 6 Ehlers C.L....Carr L.G. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Biological role of human cytosolic aldehyde dehydrogenase 1: hormonal response, retinal oxidation and implication in testicular feminization. (PubMed id 8493914)3, 4 Yoshida A.... Yanagawa Y. (1993)
- Cloning and expression of the full-length cDNAS encoding human liver class 1 and class 2 aldehyde dehydrogenase. (PubMed id 8214422)3, 4 Zheng C.F.... Weiner H. (1993)
- The 56 kDa androgen binding protein is an aldehyde dehydrogenase. (PubMed id 1709013)2, 3 Pereira F....Wrogemann K. (1991)
- Genomic structure of the human cytosolic aldehyde dehydrogenase gene. (PubMed id 2591967)3, 4 Hsu L.C.... Yoshida A. (1989)
- Aldehyde dehydrogenase from human erythrocytes: structural relationship to the liver cytosolic isozyme. (PubMed id 2776714)3, 4 Agarwal D.P.... Hempel J. (1989)
- Active site of human liver aldehyde dehydrogenase. (PubMed id 3676276)3, 4 Abriola D.P.... Pietruszko R. (1987)
- Cloning of cDNAs for human aldehyde dehydrogenases 1 and 2. (PubMed id 2987944)3, 4 Hsu L.C....Yoshida A. (1985)
|
Search for ALDH1A1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ALDH1A1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ALDH1A1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ALDH1A1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for ALDH1A1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
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Incremental update: 13 Oct 2009
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