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Aliases & Descriptions for ALCAM
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CD166 1, 2 | | FLJ38514 2 | | MEMD 1, 2, 3 | | MGC71733 2 |
| | | Descriptions |
|---|
| CD166 antigen 3 | | activated leucocyte cell adhesion molecule 1, 2 | | activated leukocyte cell adhesion molecule 2, 3 |
|
| | Search outside databases for aliases for ALCAM genePrevious GC identifers: GC03P101874 GC03P104601 GC03P106366 GC03P106406 GC03P106407 |
Summaries for ALCAM(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: CD166_HUMAN, Q13740Function: Cell adhesion molecule that binds to CD6. Involved in neurite extension by neurons via heterophilic and homophilic interactions. May play a role in the binding of T- and B-cells to activated leukocytes, as well as in interactions between cells of the nervous systemGene Wiki entry for ALCAM |
Genomic Location for ALCAM
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ALCAM gene 
Entrez Gene cytogenetic band: 3q13.1 Ensembl cytogenetic band: 3q13.11 HGNC cytogenetic band: 3q13.1ALCAM Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03P106568:
(about GC identifiers)
Start:
|
106,568,403 bp from pter |
End:
|
106,778,434 bp from pter |
Size:
|
210,032 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000003.10 NT_005612.15
| Proteins for ALCAM
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: CD166_HUMAN, Q13740 (See
protein sequence)Recommended Name: CD166 antigen precursor Size: 583 amino acids; 65102 Da
Subcellular location: Membrane; Single-pass type I membrane protein
PDB structures from and Proteopedia :1KJC (3D)
 
Secondary accessions: B2RNS3 O60892 Q1HGM8 Q1HGM9Alternative splicing: 2 isoforms: Q13740-1 Q13740-2 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001618.2
ENSEMBL proteins: ENSP00000305988 ENSP00000374577 ENSP00000374576
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0016020 | membrane |
IEA | -- | | GO:0016021 | integral to membrane |
IEA | -- | About this table
Antibodies for ALCAM:  | Invitrogen Antibodies for ALCAM |  | Millipore Mono- and Polyclonal Antibodies for the study of ALCAM |  | Sigma-Aldrich Antibodies for ALCAM |  | R&D Systems Antibodies for ALCAM (ALCAM/CD166) |  | Antibodies from Abcam (CD166), each with their AbpromiseSM |  | Monoclonal and Polyclonal Antibodies from Abnova (ALCAM) |  | Novus Biologicals Antibodies for ALCAM |
Assays for ALCAM: | Protein
Domains/ Families for ALCAM(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q13740
ProtoNet protein and cluster: Q13740 2 Blocks protein families: IPB003599 Immunoglobulin subtype IPB013162 CD80-like C2-set immunoglobulin
UniProtKB/Swiss-Prot: CD166_HUMAN, Q13740Domain: The CD6 binding site is located in the N-terminal Ig-like domainSimilarity: Contains 3 Ig-like C2-type (immunoglobulin-like) domainsSimilarity: Contains 2 Ig-like V-type (immunoglobulin-like) domains | Gene Function for ALCAM
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001627
Applied Biosystems Silencer® siRNAs for ALCAM
Sigma-Aldrich siRNA and siRNA Panels for ALCAM  Sigma-Aldrich shRNA Panels and shRNA for ALCAM  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001627                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001627                                  untagged cDNA clone in CMV expression vector: NM_001627 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001627
UniProtKB/Swiss-Prot: CD166_HUMAN, Q13740Function: Cell adhesion molecule that binds to CD6. Involved in neurite extension by neurons via heterophilic and homophilic interactions. May play a role in the binding of T- and B-cells to activated leukocytes, as well as in interactions between cells of the nervous systemGenatlas biochemistry entry for ALCAM:activated leukocyte-cell adhesion molecule,CD6 ligand,homologous to rat KG-CAM,chicken neural adhesion molecule2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Alcam):
1 Gene Ontology (GO) molecular function term (links to tree view): About this table | Pathways & Interactions for ALCAM
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for ALCAM 
5/32 Interacting proteins for ALCAM (ENSP000003745763) via UniProtKB, MINT, and/or STRING (see all 32
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for ALCAM(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ALCAM 2 Novoseek chemical compound relationships for ALCAM gene
About this table
|
Transcripts for ALCAM(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001627
Sigma-Aldrich siRNA and siRNA Panels for ALCAM  Sigma-Aldrich shRNA Panels and shRNA for ALCAM  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001627 REFSEQ mRNAs for ALCAM gene: NM_001627.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001627               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001627                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001627                                  untagged cDNA clone in CMV expression vector: NM_001627  Additional cDNA sequence: AB074167.1 AF086091.1 AK054632.1 AK095833.1 AK127617.1 AK300362.1 AK301804.1 AK316113.1 AL833702.1 AY644765.1 BC029639.1 BC041127.1 BC057809.1 BC137096.1 BC137097.1 DQ486139.1 DQ486140.1 L38608.1 Y10183.1 18 DOTS entries: DT.451628 DT.95170077 DT.40107844 DT.99975109 DT.91752875 DT.100810542 DT.99990630 DT.100043266 DT.100822887 DT.435942 DT.91752878 DT.92041066 DT.91643802 DT.99965331 DT.80101947 DT.91752865 DT.91752876 DT.97823455 24/403 AceView cDNA sequences (see all 403
):F06946 BU838382 AU118527 BG674686 T32027 BP380341 BM679709 BU741679 BM973425 AA156842 AI693132 W73410 CB178462 BC041127 Z40035 BM971365 N76480 BU629686 BM994993 AA777157 BE043005 AI435550 AI358995 AW242676
highest scoring ESTs for ALCAM:Y10183 AA029282 AA085490 AA085507 AA127889 AA156604 AA156721 AA156810 AA160065 AA160066 Unigene Cluster for ALCAM: Activated leukocyte cell adhesion molecule Hs.591293 [show with all ESTs]Unigene Representative Sequence: NM_001627
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for ALCAM (see all 7
)
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9a | · | 9b | ^ | 10a | · | 10b | ^ | 11 | ^ | 12a | · | 12b | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17a | · | 17b | |
| SP1: | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | - |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ALCAM
3 Ensembl transcripts including schematic representations: ENST00000306107
ENST00000389927
ENST00000389926
|
Expression for ALCAM
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ALCAM expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ALCAM
1 / 2 / 3 5 probe-sets matching ALCAM gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CACGAAGATG
SOURCE GeneReport for Unigene cluster: Hs.591293
Expression variation in blood from EXPOLDB for ALCAM UniProtKB/Swiss-Prot: CD166_HUMAN, Q13740Tissue specificity: Spleen, placenta, liver, and weakly in liver. Expressed by activated T-cells, B-cells, monocytes and thymic epithelial cells. Expressed by neurons in the brain. Restricted expression in tumor cell lines. Preferentially expressed in highly metastasizing melanoma cell lines |
Orthologs for ALCAM
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ALCAM gene from 5/9 species (see all 9
)
About this table Species with no ortholog for ALCAM
ENSEMBL Gene Tree for ALCAM | Paralogs for ALCAM(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ALCAM gene
- BCAM2 MCAM2
|
SNPs/Variants for ALCAM(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ALCAM (up to first 250kb)
|
Disorders & Mutations for ALCAM
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 601662
10/12 Novoseek disease relationships for ALCAM gene (see all 12
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| melanoma |
41.59 |
17 |
10702391 (4), 15140234 (2), 9502422 (2), 18279810 (1) (see all 6) |
| metastasis |
28.67 |
15 |
18202807 (5), 15318930 (4), 15140234 (1), 16810131 (1) (see all 7) |
| tumors |
26.02 |
51 |
16818742 (5), 16810131 (4), 15318930 (4), 19142865 (2) (see all 10) |
| primary tumor |
25.98 |
5 |
15140234 (2), 10702391 (1), 18172759 (1), 15318930 (1) |
| breast cancer |
25.04 |
27 |
15318930 (6), 18202807 (4), 16810131 (4), 16484444 (3) (see all 8) |
| prostate cancer |
18.33 |
10 |
12481253 (3), 18279810 (1), 15509676 (1), 10673383 (1) |
| cancer |
17.80 |
11 |
19157844 (2), 18202807 (1), 19142865 (1), 15148921 (1) (see all 5) |
| breast carcinoma |
14.20 |
1 |
16484444 (1) |
| colon cancer |
0.00 |
2 |
16484444 (1), 15509676 (1) |
| inflammation |
0.00 |
1 |
9870879 (1) |
About this table
|
Medical News for ALCAM(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ALCAM (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/97 PubMed articles for ALCAM gene (see all 97
):- Cloning, mapping, and characterization of activated leukocyte-cell adhesion molecule (ALCAM), a CD6 ligand. (PubMed id 7760007)1, 2, 3, 4 Bowen M.A....Aruffo A. (1995)
- MEMD, a new cell adhesion molecule in metastasizing human melanoma cell lines, is identical to ALCAM (activated leukocyte cell adhesion molecule). (PubMed id 9502422)1, 3, 4 Degen W.G.... Swart G.W. (1998)
- Recognition of diverse proteins by members of the immunoglobulin superfamily: delineation of the receptor binding site in the human CD6 ligand ALCAM. (PubMed id 8823162)1, 3, 4 Skonier J.E.... Bajorath J. (1996)
- Molecular model of the N-terminal receptor-binding domain of the human CD6 ligand ALCAM. (PubMed id 8520490)1, 3, 4 Bajorath J.... Aruffo A. (1995)
- Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952)3, 4 Liu T.... Smith R.D. (2005)
- Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. (PubMed id 12754519)3, 4 Zhang H.... Aebersold R. (2003)
- Molecular isolation and characterization of a soluble isoform of activated leukocyte cell adhesion molecule that modulates endothelial cell function. (PubMed id 15496415)1, 3 Ikeda K. and Quertermous T. (2004)
- Expression of the cell to cell adhesion molecule, ALCAM, in breast cancer patients and the potential link with skeletal metastasis. (PubMed id 18202807)1, 3 Davies S.R....Jiang W.G. (2008)
- ALCAM/CD166 is up-regulated in low-grade prostate cancer and progressively lost in high-grade lesions. (PubMed id 12481253)1, 3 Kristiansen G....Rosenthal A. (2003)
- Cytoplasmic accumulation of activated leukocyte cell adhesion molecule is a predictor of disease progression and reduced survival in oral cancer patients. (PubMed id 19142865)1, 3 Sawhney M....Ralhan R. (2009)
|
Search for ALCAM
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ALCAM
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ALCAM
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ALCAM(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for ALCAM(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ALCAM:

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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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