ALAS2 Gene
protein-coding GIFtS : 60
GC0XM055053
aminolevulinate, delta-, synthase 2 (Previous names: aminolevulinate, delta-, synthase 2 (sideroblastic/hypochromic anemia) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: ASB )
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Aliases & Descriptions for ALAS2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ALAS-E 2 , 3 ALASE 2 , 3 ANH1 2 , 5 ASB 2 , 3 , 5 EC 2.3.1.37 3 FLJ93603 2 OTTHUMP00000023388 2 OTTHUMP00000023389 2 XLSA 2
Descriptions 5-aminolevulinate synthase 2 2 5-aminolevulinate synthase, erythroid-specific, mitochondrial 2 5-aminolevulinic acid synthase 2 , 3 Delta-ALA synthetase 2 , 3 Delta-aminolevulinate synthase 2 , 3 aminolevulinate, delta-, synthase 2 2 aminolevulinate, delta-, synthase 2 (sideroblastic/hypochromic anemia) 1
Search outside databases for aliases for ALAS2 genePrevious GC identifers: GC0XM051887 GC0XM052973 GC0XM053640 GC0XM054002 GC0XM054918
Summaries for ALAS2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ALAS2 : The product of this gene specifies an erythroid-specific mitochondrially located enzyme. Theencoded protein catalyzes the first step in the heme biosynthetic pathway. Defects in this genecause X-linked pyridoxine-responsive sideroblastic anemia. Alternatively spliced transcriptvariants encoding different isoforms have been identified. [provided by RefSeq]
Genomic Location for ALAS2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ALAS2 gene Entrez Gene cytogenetic band: Xp11.21 Ensembl cytogenetic band: Xp11.21 HGNC cytogenetic band: Xp11.21 ALAS2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome X GeneLoc Exon Structure
GeneLoc location for GC0XM055053:
(about GC identifiers )
Start:
55,052,213 bp from pter
End:
55,074,136 bp from pter
Size:
21,924 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000023.9 NT_011630.14 Proteins for ALAS2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: HEM0_HUMAN, P22557 (See
protein sequence )Recommended Name: 5-aminolevulinate synthase, erythroid-specific, mitochondrial precursor Size : 587 amino acids; 64633 Da
Cofactor : Pyridoxal phosphate
Subunit : Homodimer
Subcellular location : Mitochondrion matrix
Miscellaneous : There are two delta-ALA synthetase in vertebrates: an erythroid- specific form andone (housekeeping) which is expressed in all tissues
Secondary accessions : Q13735
REFSEQ proteins (4 alternative transcripts):
NP_000023.2 NP_001033056.1 NP_001033057.1 NP_001033058.1 ENSEMBL proteins: ENSP00000332369 ENSP00000379498 ENSP00000337131 ENSP00000379501 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ALAS2: Assays for ALAS2:
Protein
Domains/ Families for ALAS2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P22557 ProtoNet protein and cluster: P22557
1 Blocks protein family : IPB001917 Aminotransferase UniProtKB/Swiss-Prot: HEM0_HUMAN, P22557 Similarity : Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family
Gene Function for ALAS2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001037967 Applied Biosystems Silencer ® siRNAs for ALAS2 Sigma-Aldrich siRNA and siRNA Panels for ALAS2 Sigma-Aldrich shRNA Panels and shRNA for ALAS2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_000032                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_000032                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_000032  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000032 UniProtKB/Swiss-Prot: HEM0_HUMAN, P22557 Catalytic activity : Succinyl-CoA + glycine = 5-aminolevulinate + CoA + CO(2)Enzyme Number (IUBMB): EC 2.3.1.37
Genatlas biochemistry entry for ALAS2 :aminolevulinate,delta-,synthase 2,erythroid,mitochondrial,pyridoxal dependent,catalyzing the firststep of porphyrin biosynthesis,with a transcription factor binding site
5 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Alas2) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for ALAS2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for ALAS2 (Your Favorite Gene powered by Ingenuity) UniProtKB/Swiss-Prot: HEM0_HUMAN, P22557 Pathway : Porphyrin metabolism; protoporphyrin-IX biosynthesis; 5-aminolevulinate from glycine: step1/1
5/38 Interacting proteins for ALAS2 (ENSP00000332369 3 ) via UniProtKB, MINT, and/or STRING (see all 38
)About this table 5/8 Gene Ontology (GO) biological process terms (links to tree view) (see all 8
):
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Drugs & Compounds for ALAS2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ALAS2 10/13 Novoseek chemical compound relationships for ALAS2 gene (see all 13
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
5-aminolevulinic acid
89.90
51
8107717 (3), 2294742 (2), 8089650 (2), 12139757 (2) (see all 34 )
iron
67.11
50
15885606 (4), 11039663 (3), 12139757 (2), 18637800 (2) (see all 20 )
haem
53.67
3
9806542 (1), 12139757 (1), 18637800 (1)
protoporphyrin ix
49.13
2
15831703 (1), 11843825 (1)
asparagine
39.92
8
11551215 (2), 7907328 (2), 12531813 (1), 12890666 (1)
vanadate
24.97
1
9106619 (1)
leucine
22.15
1
16234850 (1)
proline
4.97
2
16234850 (2)
atp
0.00
1
12890666 (1)
oxygen
0.00
2
16234850 (2)
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Transcripts for ALAS2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001037967 Sigma-Aldrich siRNA and siRNA Panels for ALAS2 Sigma-Aldrich shRNA Panels and shRNA for ALAS2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000032 NM_001037967 NM_001037968
REFSEQ mRNAs for ALAS2 gene (4 alternative transcripts): NM_000032.4 NM_001037967.3 NM_001037968.3 NM_001037969.1 NM_000032 NM_001037967 NM_001037968
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_000032                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_000032                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_000032  
Additional cDNA sequence: AK290565.1 AK291589.1 AK313118.1 BC030230.2 CR591435.1 CR593743.1 CR606333.1 CR606670.1 CR608649.1 CR609889.1 CR613185.1 CR615092.1 CR620984.1 CR626361.1 X56352.1 X60364.1
17 DOTS entries : DT.100869641 DT.100038775 DT.100038774 DT.448590 DT.100669048 DT.100812198 DT.121301008 DT.95159804 DT.202594 DT.100830674 DT.97791106 DT.121301071 DT.95159810 DT.100803629 DT.100806515 DT.95159813 DT.95377534
24/272 AceView cDNA sequences (see all 272
):BM693641 BX367133 BU660825 BU664104 AL533802 AL700214 BX380113 BM720597 BX360872 CR606333 AA342031 BX427121 AL531498 BP374201 AU120290 AL531776 BX386537 BX380114 BC030230 BM669325 BX399320 BU663014 AL557952 T29077
highest scoring ESTs for ALAS2 :X60364 BU657828 BU657891 BU658655 BU661488 BU663292 AA010003 AA026133 AA332857 AA342031
Unigene Cluster for ALAS2: Aminolevulinate, delta-, synthase 2 Hs.522666 [show with all ESTs ] Unigene Representative Sequence: NM_000032 GeneLoc Exon Structure 5/10 Alternative Splicing Database (ASD) splice patterns (SP) for ALAS2 (see all 10
) ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b · 8c · 8d · 8e ^ 9a · 9b ^ 10a · 10b ^ 11 ^ 12 ^ 13 SP1 :     -       -   -                                 SP2 :           -   -   -                               SP3 :                                             SP4 :           -   -                                 SP5 :           -   -   -                              
About this scheme ECgene alternative splicing isoforms for ALAS2 4 Ensembl transcripts including schematic representations : ENST00000330807
ENST00000396195
ENST00000335854
ENST00000396198
Expression for ALAS2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ALAS2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ALAS2 1 / 2 / 3
3 probe-sets matching ALAS2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TGAAGCCTTTSOURCE GeneReport for Unigene cluster: Hs.522666 Expression variation in blood from EXPOLDB for ALAS2
UniProtKB/Swiss-Prot: HEM0_HUMAN, P22557 Tissue specificity : Erythroid specific
Orthologs for ALAS2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ALAS2 gene from 5/14 species (see all 14
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
ALAS21
--
aminolevulinate, delta-, synthase 2
90.46(n) 91.82(a)
491498 XM_548619.2 XP_548619.2
chimpanzee (Pan troglodytes)
ALAS21
--
aminolevulinate, delta-, synthase 2
92.12(n) 90.36(a)
473626 XM_001147099.1 XP_001147099.1
cow (Bos taurus)
ALAS21
--
aminolevulinate, delta-, synthase 2
91.03(n) 92.67(a)
511791 NM_001035103.1 NP_001030275.1
rat (Rattus norvegicus)
Alas21
--
aminolevulinate, delta-, synthase 2
88.06(n) 94.03(a)
25748 XM_001062452.1 XP_001062452.1
mouse (Mus musculus)
Alas21 , 5
X (63.00 cM) 5
aminolevulinic acid synthase 2, erythroid1, 5
87.45(n) 1 90.12(a) 1
11656 1 NM_009653.2 1 NP_033783.1 1 AF171078 5 AK002642 5 (see all 16 )
About this table Species with no ortholog for ALAS2 ENSEMBL Gene Tree for ALAS2 Paralogs for ALAS2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ALAS2 gene GCAT 2 ALAS1 2
SNPs/Variants for ALAS2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ALAS2 (up to first 250kb)
Disorders & Mutations for ALAS2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 301300 disorders : 300751 300752 UniProtKB/Swiss-Prot: HEM0_HUMAN, P22557
Defects in ALAS2 are a cause of anemia sideroblastic X-linked (XLSA) [MIM:300751].Sideroblastic anemia is characterized by anemia of varying severity, hypochromic peripheralerythrocytes, systemic iron overload secondary to chronic ineffective erythropoiesis, and thepresence of bone marrow ringed sideroblasts. Sideroblasts are characterized by iron-loadedmitochondria clustered around the nucleus. XLSA shows a variable hematologic response topharmacologic doses of pyridoxine Defects in ALAS2 are the cause of erythropoietic protoporphyria X-linked dominant (XLDPT)[MIM:300752]. Porphyrias are inherited defects in the biosynthesis of heme, resulting in theaccumulation and increased excretion of porphyrins or porphyrin precursors. They are classified aserythropoietic or hepatic, depending on whether the enzyme deficiency occurs in red blood cells orin the liver. XLDPT is a form of porphyria characterized biochemically by a high proportion ofzinc-protoporphyrin in erythrocytes, in which a mismatch between protoporphyrin production and theheme requirement of differentiating erythroid cells leads to overproduction of protoporphyrin inamounts sufficient to cause photosensitivity and liver disease
10/12 Novoseek disease relationships for ALAS2 gene (see all 12
)
About this table Human Gene Mutation Database : ALAS2
Medical News for ALAS2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ALAS2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/112 PubMed articles for ALAS2 gene (see all 112
): Identification and characterization of a conserved erythroid-specific enhancer located in intron 8 of the human 5-aminolevulinate synthase 2 gene. (PubMed id 9642238) 1, 3, 4 Surinya K.H.... May B.K. (1998) Four new mutations in the erythroid-specific 5-aminolevulinate synthase (ALAS2) gene causing X-linked sideroblastic anemia: increased pyridoxine responsiveness after removal of iron overload by phlebotomy and coinheritance of hereditary hemochromatosis. (PubMed id 10029606) 1, 3, 4 Cotter P.D.... Bishop D.F. (1999) Assignment of human erythroid delta-aminolevulinate synthase (ALAS2) to a distal subregion of band Xp11.21 by PCR analysis of somatic cell hybrids containing X; autosome translocations. (PubMed id 1577484) 1, 2, 3 Cotter P.D....Bishop D.F. (1992) C-terminal deletions in the ALAS2 gene lead to gain of function and cause X-linked dominant protoporphyria without anemia or iron overload. (PubMed id 18760763) 1, 3, 4 Whatley S.D....Puy H. (2008) Absent phenotypic expression of X-linked sideroblastic anemia in one of 2 brothers with a novel ALAS2 mutation. (PubMed id 12393718) 1, 3, 4 Cazzola M....Bishop D.F. (2002) X-linked pyridoxine-responsive sideroblastic anemia due to a Thr388- to-Ser substitution in erythroid 5-aminolevulinate synthase. (PubMed id 8107717) 1, 3, 4 Cox T.C....May B.K. (1994) R411C mutation of the ALAS2 gene encodes a pyridoxine-responsive enzyme with low activity. (PubMed id 9858242) 1, 3, 4 Furuyama K.... Yamamoto M. (1998) Human erythroid 5-aminolevulinate synthase: promoter analysis and identification of an iron-responsive element in the mRNA. (PubMed id 2050125) 1, 3, 4 Cox T.C.... May B.K. (1991) A novel mutation of the erythroid-specific gamma-aminolevulinate synthase gene in a patient with non-inherited pyridoxine-responsive sideroblastic anemia. (PubMed id 10577279) 1, 3, 4 Harigae H....Sasaki T. (1999) The DNA sequence of the human X chromosome. (PubMed id 15772651) 3, 4 Ross M.T.... Bentley D.R. (2005)
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Genome Databases showing ALAS2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ALAS2
(According to HUGE )
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Specialized Databases showing ALAS2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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GeneReviews http://www.genetests.org/query?gene=ALAS2
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-- Services for ALAS2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for ALAS2:
Search Tocris compounds for ALAS2
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009