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Aliases for AKR1C6P Gene

Aliases for AKR1C6P Gene

  • Aldo-Keto Reductase Family 1 Member C6, Pseudogene 2 3 5
  • Truncated Aldo-Keto Reductase 2 3
  • Aldo-Keto Reductase, Truncated 3
  • Truncated AKR 3
  • TAKR 3

External Ids for AKR1C6P Gene

Summaries for AKR1C6P Gene

GeneCards Summary for AKR1C6P Gene

AKR1C6P (Aldo-Keto Reductase Family 1 Member C6, Pseudogene) is a Pseudogene.

Additional gene information for AKR1C6P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AKR1C6P Gene

Genomics for AKR1C6P Gene

Regulatory Elements for AKR1C6P Gene

Enhancers for AKR1C6P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H004882 1.2 Ensembl ENCODE 0.3 +32.9 32893 1 HDAC1 ATF1 NFRKB TCF12 CBX5 EGR1 FOS CREM ZBTB11 ZEB2 AKR1E2 PIR32364 AKR1C6P
GH10H004901 0.7 ENCODE 0.4 +13.5 13532 1 SOX13 FOXA2 MAX REST EBF1 RAD21 YY1 NFIC JUND ATF3 AKR1C3 AKR1C2 AKR1C1 AKR1C6P PIR32364
GH10H004931 0.7 ENCODE 0.4 -15.5 -15477 0 ZSCAN4 MAX REST RAD21 YY1 JUND ATF3 GLIS1 IKZF1 HNF4A AKR1C1 GC10P004937 AKR1C6P
GH10H004924 0.5 FANTOM5 0.4 -8.6 -8625 0 ZSCAN4 KDM1A PAX8 AKR1C2 AKR1C1 UCN3 AKR1C6P GC10P004937
GH10H004866 1 ENCODE 0.2 +48.5 48534 1 PKNOX1 ATF1 ARNT TCF12 GATA2 FOS ATF7 CAVIN1 NCOA1 REST FAM208B AKR1E2 ENSG00000226647 NRBF2P5 AKR1C3 PIR32364 AKR1C6P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AKR1C6P on UCSC Golden Path with GeneCards custom track

Genomic Location for AKR1C6P Gene

Chromosome:
10
Start:
4,871,667 bp from pter
End:
4,916,273 bp from pter
Size:
44,607 bases
Orientation:
Minus strand

Genomic View for AKR1C6P Gene

Genes around AKR1C6P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AKR1C6P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AKR1C6P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AKR1C6P Gene

Proteins for AKR1C6P Gene

Post-translational modifications for AKR1C6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for AKR1C6P Gene

Domains & Families for AKR1C6P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AKR1C6P Gene

Function for AKR1C6P Gene

Phenotypes From GWAS Catalog for AKR1C6P Gene

genes like me logo Genes that share phenotypes with AKR1C6P: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AKR1C6P Gene

Localization for AKR1C6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AKR1C6P Gene

Pathways & Interactions for AKR1C6P Gene

SuperPathways for AKR1C6P Gene

No Data Available

Interacting Proteins for AKR1C6P Gene

Gene Ontology (GO) - Biological Process for AKR1C6P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AKR1C6P Gene

Drugs & Compounds for AKR1C6P Gene

No Compound Related Data Available

Transcripts for AKR1C6P Gene

mRNA/cDNA for AKR1C6P Gene

(1) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AKR1C6P Gene

Aldo-keto reductase family 1, member C6, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AKR1C6P Gene

No ASD Table

Relevant External Links for AKR1C6P Gene

GeneLoc Exon Structure for
AKR1C6P
ECgene alternative splicing isoforms for
AKR1C6P

Expression for AKR1C6P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AKR1C6P Gene

mRNA differential expression in normal tissues according to GTEx for AKR1C6P Gene

This gene is overexpressed in Liver (x50.0).

NURSA nuclear receptor signaling pathways regulating expression of AKR1C6P Gene:

AKR1C6P

SOURCE GeneReport for Unigene cluster for AKR1C6P Gene:

Hs.631812
genes like me logo Genes that share expression patterns with AKR1C6P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AKR1C6P Gene

Orthologs for AKR1C6P Gene

Evolution for AKR1C6P Gene

ENSEMBL:
Gene Tree for AKR1C6P (if available)
TreeFam:
Gene Tree for AKR1C6P (if available)

No data available for Orthologs for AKR1C6P Gene

Paralogs for AKR1C6P Gene

No data available for Paralogs for AKR1C6P Gene

Variants for AKR1C6P Gene

Sequence variations from dbSNP and Humsavar for AKR1C6P Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000050283 -- 4,891,049(+) CAATC(C/T)TACAA intron-variant
rs1000050761 -- 4,890,047(+) AGGAA(C/T)AGATG intron-variant
rs1000081379 -- 4,903,462(+) CAGAA(G/T)CCTTC intron-variant
rs1000095038 -- 4,885,688(+) CTGAG(C/T)AAGAG intron-variant
rs1000121221 -- 4,908,423(+) AAGGT(A/G)AGATC intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for AKR1C6P Gene

Variant ID Type Subtype PubMed ID
esv2762839 CNV loss 21179565
esv3578596 CNV loss 25503493
esv3622212 CNV loss 21293372
nsv1042940 CNV loss 25217958
nsv1045155 CNV loss 25217958
nsv1050246 CNV gain 25217958
nsv519977 CNV gain 19592680
nsv549881 CNV loss 21841781
nsv549882 CNV loss 21841781

Relevant External Links for AKR1C6P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AKR1C6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AKR1C6P Gene

Disorders for AKR1C6P Gene

Relevant External Links for AKR1C6P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AKR1C6P

No disorders were found for AKR1C6P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AKR1C6P Gene

Publications for AKR1C6P Gene

  1. Genome wide association study: searching for genes underlying body mass index in the Chinese. (PMID: 24827717) Yang F … Deng HW (Biomedical and environmental sciences : BES 2014) 3 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  3. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3 60
  4. Close kinship of human 20alpha-hydroxysteroid dehydrogenase gene with three aldo-keto reductase genes. (PMID: 10672042) Nishizawa M … Ito S (Genes to cells : devoted to molecular & cellular mechanisms 2000) 3 60

Products for AKR1C6P Gene

Sources for AKR1C6P Gene

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