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Aliases for AKIRIN2 Gene

Aliases for AKIRIN2 Gene

  • Akirin 2 2 3 5
  • C6orf166 3 4
  • Fourteen-Three-Three Beta Interactant 1 3
  • Chromosome 6 Open Reading Frame 166 2
  • DJ486L4.2 3
  • FBI1 3

External Ids for AKIRIN2 Gene

Previous HGNC Symbols for AKIRIN2 Gene

  • C6orf166

Previous GeneCards Identifiers for AKIRIN2 Gene

  • GC06M088442
  • GC06M085599
  • GC06M088384

Summaries for AKIRIN2 Gene

GeneCards Summary for AKIRIN2 Gene

AKIRIN2 (Akirin 2) is a Protein Coding gene. GO annotations related to this gene include enzyme binding. An important paralog of this gene is AKIRIN1.

UniProtKB/Swiss-Prot for AKIRIN2 Gene

  • Required for the innate immune response. Downstream effector of the Toll-like receptor (TLR), TNF and IL-1 beta signaling pathways leading to the production of IL-6. Forms a complex with YWHAB that acts to repress transcription of DUSP1 (By similarity).

Gene Wiki entry for AKIRIN2 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AKIRIN2 Gene

Genomics for AKIRIN2 Gene

Regulatory Elements for AKIRIN2 Gene

Enhancers for AKIRIN2 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around AKIRIN2 on UCSC Golden Path with GeneCards custom track

Promoters for AKIRIN2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around AKIRIN2 on UCSC Golden Path with GeneCards custom track

Genomic Location for AKIRIN2 Gene

Chromosome:
6
Start:
87,674,860 bp from pter
End:
87,702,267 bp from pter
Size:
27,408 bases
Orientation:
Minus strand

Genomic View for AKIRIN2 Gene

Genes around AKIRIN2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AKIRIN2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AKIRIN2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AKIRIN2 Gene

Proteins for AKIRIN2 Gene

  • Protein details for AKIRIN2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q53H80-AKIR2_HUMAN
    Recommended name:
    Akirin-2
    Protein Accession:
    Q53H80
    Secondary Accessions:
    • Q9BQB1

    Protein attributes for AKIRIN2 Gene

    Size:
    203 amino acids
    Molecular mass:
    22496 Da
    Quaternary structure:
    • Interacts with YWHAB.
    Miscellaneous:
    • Akiraka ni suru means making things clear in Japanese. The name is given based on the presence of the clear nuclear localization signal.

neXtProt entry for AKIRIN2 Gene

Proteomics data for AKIRIN2 Gene at MOPED

Post-translational modifications for AKIRIN2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for AKIRIN2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for AKIRIN2 Gene

Domains & Families for AKIRIN2 Gene

Protein Domains for AKIRIN2 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for AKIRIN2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q53H80

UniProtKB/Swiss-Prot:

AKIR2_HUMAN :
  • Belongs to the akirin family.
Family:
  • Belongs to the akirin family.
genes like me logo Genes that share domains with AKIRIN2: view

No data available for Gene Families for AKIRIN2 Gene

Function for AKIRIN2 Gene

Molecular function for AKIRIN2 Gene

UniProtKB/Swiss-Prot Function:
Required for the innate immune response. Downstream effector of the Toll-like receptor (TLR), TNF and IL-1 beta signaling pathways leading to the production of IL-6. Forms a complex with YWHAB that acts to repress transcription of DUSP1 (By similarity).
genes like me logo Genes that share phenotypes with AKIRIN2: view

Animal Models for AKIRIN2 Gene

MGI Knock Outs for AKIRIN2:

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for AKIRIN2 Gene

Localization for AKIRIN2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for AKIRIN2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for AKIRIN2 Gene COMPARTMENTS Subcellular localization image for AKIRIN2 gene
Compartment Confidence
nucleus 5
cytosol 1
extracellular 1
golgi apparatus 1
mitochondrion 1

No data available for Gene Ontology (GO) - Cellular Components for AKIRIN2 Gene

Pathways & Interactions for AKIRIN2 Gene

SuperPathways for AKIRIN2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AKIRIN2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IEA --
GO:0009790 embryo development IEA --
GO:0010950 positive regulation of endopeptidase activity IEA --
GO:0032496 response to lipopolysaccharide IEA --
GO:0032755 positive regulation of interleukin-6 production IEA --
genes like me logo Genes that share ontologies with AKIRIN2: view

No data available for Pathways by source and SIGNOR curated interactions for AKIRIN2 Gene

Drugs & Compounds for AKIRIN2 Gene

No Compound Related Data Available

Transcripts for AKIRIN2 Gene

mRNA/cDNA for AKIRIN2 Gene

Unigene Clusters for AKIRIN2 Gene

Akirin 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AKIRIN2 Gene

No ASD Table

Relevant External Links for AKIRIN2 Gene

GeneLoc Exon Structure for
AKIRIN2
ECgene alternative splicing isoforms for
AKIRIN2

Expression for AKIRIN2 Gene

mRNA expression in normal human tissues for AKIRIN2 Gene

mRNA differential expression in normal tissues according to GTEx for AKIRIN2 Gene

This gene is overexpressed in Whole Blood (x4.3).

Protein differential expression in normal tissues from HIPED for AKIRIN2 Gene

This gene is overexpressed in Hair follicle (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for AKIRIN2 Gene



SOURCE GeneReport for Unigene cluster for AKIRIN2 Gene Hs.485915

mRNA Expression by UniProt/SwissProt for AKIRIN2 Gene

Q53H80-AKIR2_HUMAN
Tissue specificity: Widely expressed with the highest expression in peripheral blood leukocytes.
genes like me logo Genes that share expression patterns with AKIRIN2: view

Protein tissue co-expression partners for AKIRIN2 Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for AKIRIN2 Gene

Orthologs for AKIRIN2 Gene

This gene was present in the common ancestor of animals.

Orthologs for AKIRIN2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia AKIRIN2 35
  • 94.75 (n)
  • 97.54 (a)
AKIRIN2 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia AKIRIN2 35
  • 95.89 (n)
  • 98.03 (a)
AKIRIN2 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Akirin2 35
  • 90.05 (n)
  • 93.03 (a)
Akirin2 16
Akirin2 36
  • 94 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia AKIRIN2 35
  • 99.67 (n)
  • 100 (a)
AKIRIN2 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Akirin2 35
  • 89.39 (n)
  • 93.03 (a)
oppossum
(Monodelphis domestica)
Mammalia AKIRIN2 36
  • 96 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia AKIRIN2 36
  • 92 (a)
OneToOne
chicken
(Gallus gallus)
Aves AKIRIN2 35
  • 87.09 (n)
  • 93.19 (a)
AKIRIN2 36
  • 94 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia AKIRIN2 36
  • 88 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia akirin2 35
  • 79.44 (n)
  • 85.56 (a)
MGC76154 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.7326 35
zebrafish
(Danio rerio)
Actinopterygii akirin2 35
  • 72.59 (n)
  • 82.22 (a)
Dr.4764 35
akirin2 36
  • 82 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006809 35
  • 53.98 (n)
  • 46.7 (a)
fruit fly
(Drosophila melanogaster)
Insecta akirin 35
  • 48.05 (n)
  • 40.1 (a)
akirin 36
  • 39 (a)
OneToMany
Species with no ortholog for AKIRIN2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for AKIRIN2 Gene

ENSEMBL:
Gene Tree for AKIRIN2 (if available)
TreeFam:
Gene Tree for AKIRIN2 (if available)

Paralogs for AKIRIN2 Gene

Paralogs for AKIRIN2 Gene

(1) SIMAP similar genes for AKIRIN2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with AKIRIN2: view

Variants for AKIRIN2 Gene

Sequence variations from dbSNP and Humsavar for AKIRIN2 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1052623 -- 87,702,172(-) GCAGC(C/T)ACCTC utr-variant-5-prime
rs6899982 -- 87,700,085(+) CTTTT(A/C)AATCT intron-variant
rs6900561 -- 87,693,004(+) tggtc(A/G)gatca intron-variant
rs6906050 -- 87,684,677(+) TGCTT(C/T)TGAGA intron-variant
rs6912957 -- 87,689,329(+) aaacc(C/T)catct intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AKIRIN2 Gene

Variant ID Type Subtype PubMed ID
dgv1992e1 CNV Complex 17122850
nsv7941 CNV Gain 18304495

Variation tolerance for AKIRIN2 Gene

Residual Variation Intolerance Score: 54.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.37; 8.13% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for AKIRIN2 Gene

Disorders for AKIRIN2 Gene

Relevant External Links for AKIRIN2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AKIRIN2

No disorders were found for AKIRIN2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AKIRIN2 Gene

Publications for AKIRIN2 Gene

  1. Akirins are highly conserved nuclear proteins required for NF-kappaB- dependent gene expression in Drosophila and mice. (PMID: 18066067) Goto A. … Reichhart J.-M. (Nat. Immunol. 2008) 3 4 67
  2. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3
  3. A high-confidence interaction map identifies SIRT1 as a mediator of acetylation of USP22 and the SAGA coactivator complex. (PMID: 23382074) Armour S.M. … Sinclair D.A. (Mol. Cell. Biol. 2013) 3
  4. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 3
  5. A novel binding factor of 14-3-3beta functions as a transcriptional repressor and promotes anchorage-independent growth, tumorigenicity, and metastasis. (PMID: 18460465) Komiya Y. … Tashiro F. (J. Biol. Chem. 2008) 3

Products for AKIRIN2 Gene

Sources for AKIRIN2 Gene

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