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Aliases for AKIP1 Gene

Aliases for AKIP1 Gene

  • A-Kinase Interacting Protein 1 2 3 5
  • A Kinase (PRKA) Interacting Protein 1 2 3
  • Proline-Rich Protein BCA3 3 4
  • C11orf17 3 4
  • BCA3 3 4
  • Breast Cancer-Associated Gene 3 Protein 4
  • Chromosome 11 Open Reading Frame 17 2
  • Breast Cancer Associated Gene 3 3
  • A-Kinase-Interacting Protein 1 3
  • PKA-Interacting Protein 4
  • Koyt Binding Protein 1 3
  • Koyt Binding Protein 2 3
  • Koyt Binding Protein 3 3

External Ids for AKIP1 Gene

Previous HGNC Symbols for AKIP1 Gene

  • C11orf17

Summaries for AKIP1 Gene

Entrez Gene Summary for AKIP1 Gene

  • This gene encodes a nuclear protein that interacts with protein kinase A catalytic subunit, and regulates the effect of the cAMP-dependent protein kinase signaling pathway on the NF-kappa-B activation cascade. Alternatively spliced transcript variants have been described for this gene. [provided by RefSeq, Oct 2011]

GeneCards Summary for AKIP1 Gene

AKIP1 (A-Kinase Interacting Protein 1) is a Protein Coding gene. Diseases associated with AKIP1 include Breast Cancer.

UniProtKB/Swiss-Prot for AKIP1 Gene

  • Enhances NF-kappa-B transcriptional activity by regulating the nuclear localization of the NF-kappa-B subunit RELA and promoting the phosphorylation of RELA by PRKACA. Regulates the effect of the cAMP-dependent protein kinase signaling pathway on the NF-kappa-B activation cascade.

Additional gene information for AKIP1 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AKIP1 Gene

Genomics for AKIP1 Gene

Regulatory Elements for AKIP1 Gene

Enhancers for AKIP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H008825 1.7 FANTOM5 Ensembl ENCODE dbSUPER 16.5 -83.7 -83742 3 HDAC1 YBX3 HDGF PKNOX1 ZSCAN4 YBX1 NFXL1 ZBTB40 TCF12 ELK1 AKIP1 TMEM9B-AS1 WEE1 EIF3F ZNF143 RPL27A SNORA3A ENSG00000254665 SCUBE2 GC11P008808
GH11H008865 1.3 FANTOM5 Ensembl ENCODE 19.7 -43.7 -43715 3 GTF2F1 TBP CEBPG ZNF384 RAD21 ZFHX2 POLR2A SCRT2 RCOR1 EGR2 TMEM9B-AS1 AKIP1 SCUBE2 C11orf16 ST5 ENSG00000202276 GC11M008877 RNA5SP330
GH11H008731 1.6 VISTA Ensembl ENCODE dbSUPER 15.1 -178.1 -178108 3 PKNOX1 ATF1 FOXA2 TBL1XR1 ZSCAN9 RAD21 RARA YY1 ATF7 MIXL1 AKIP1 ENSG00000254665 RPL27A SCUBE2 TMEM9B-AS1 TRIM66 PIR56836
GH11H009001 1.1 FANTOM5 ENCODE 21.5 +90.9 90884 0 HDGF PKNOX1 ATF1 JUN MAX CEBPG FOSL1 CTBP1 FOXK2 FOS NRIP3 AKIP1 SCUBE2 DENND5A ZNF143 TMEM9B IPO7 GC11P008977
GH11H009361 1.9 FANTOM5 Ensembl ENCODE 12.2 +452.4 452398 4 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 DENND5A NRIP3 SNORA3B ZNF143 AKIP1 RPL21P97 RPL27A IPO7 TMEM41B TMEM9B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AKIP1 on UCSC Golden Path with GeneCards custom track

Promoters for AKIP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000036530 182 2201 ARID4B SIN3A DMAP1 ZNF2 YY1 GLIS2 KLF7 SP3 SP5 NFYC

Genomic Location for AKIP1 Gene

Chromosome:
11
Start:
8,911,118 bp from pter
End:
8,920,084 bp from pter
Size:
8,967 bases
Orientation:
Plus strand

Genomic View for AKIP1 Gene

Genes around AKIP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AKIP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AKIP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AKIP1 Gene

Proteins for AKIP1 Gene

  • Protein details for AKIP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NQ31-AKIP1_HUMAN
    Recommended name:
    A-kinase-interacting protein 1
    Protein Accession:
    Q9NQ31
    Secondary Accessions:
    • Q8NBS2
    • Q8TAC6
    • Q8TAD3
    • Q8TAE0

    Protein attributes for AKIP1 Gene

    Size:
    210 amino acids
    Molecular mass:
    23114 Da
    Quaternary structure:
    • Interacts with PRKACA and RELA.

    Alternative splice isoforms for AKIP1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for AKIP1 Gene

Post-translational modifications for AKIP1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for AKIP1 Gene

Domains & Families for AKIP1 Gene

Gene Families for AKIP1 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for AKIP1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for AKIP1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AKIP1: view

No data available for UniProtKB/Swiss-Prot for AKIP1 Gene

Function for AKIP1 Gene

Molecular function for AKIP1 Gene

UniProtKB/Swiss-Prot Function:
Enhances NF-kappa-B transcriptional activity by regulating the nuclear localization of the NF-kappa-B subunit RELA and promoting the phosphorylation of RELA by PRKACA. Regulates the effect of the cAMP-dependent protein kinase signaling pathway on the NF-kappa-B activation cascade.

Phenotypes From GWAS Catalog for AKIP1 Gene

Gene Ontology (GO) - Molecular Function for AKIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 15630084
genes like me logo Genes that share ontologies with AKIP1: view
genes like me logo Genes that share phenotypes with AKIP1: view

Animal Models for AKIP1 Gene

MGI Knock Outs for AKIP1:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for AKIP1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for AKIP1 Gene

Localization for AKIP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for AKIP1 Gene

Nucleus. Note=Locates to punctate spots.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for AKIP1 gene
Compartment Confidence
nucleus 5
mitochondrion 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for AKIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005654 nucleoplasm IDA --
genes like me logo Genes that share ontologies with AKIP1: view

Pathways & Interactions for AKIP1 Gene

SuperPathways for AKIP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AKIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0034446 substrate adhesion-dependent cell spreading IEA --
GO:1901222 regulation of NIK/NF-kappaB signaling IEA --
genes like me logo Genes that share ontologies with AKIP1: view

No data available for Pathways by source and SIGNOR curated interactions for AKIP1 Gene

Drugs & Compounds for AKIP1 Gene

No Compound Related Data Available

Transcripts for AKIP1 Gene

Unigene Clusters for AKIP1 Gene

A kinase (PRKA) interacting protein 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for AKIP1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for AKIP1 Gene

ExUns: 1a · 1b ^ 2a · 2b · 2c · 2d ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c · 6d
SP1: - - -
SP2: - - - -
SP3:
SP4: - -
SP5: - - -
SP6: -

Relevant External Links for AKIP1 Gene

GeneLoc Exon Structure for
AKIP1
ECgene alternative splicing isoforms for
AKIP1

Expression for AKIP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AKIP1 Gene

Protein differential expression in normal tissues from HIPED for AKIP1 Gene

This gene is overexpressed in CD8 Tcells (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for AKIP1 Gene



Protein tissue co-expression partners for AKIP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of AKIP1 Gene:

AKIP1

SOURCE GeneReport for Unigene cluster for AKIP1 Gene:

Hs.131180

mRNA Expression by UniProt/SwissProt for AKIP1 Gene:

Q9NQ31-AKIP1_HUMAN
Tissue specificity: Expressed at high levels in adult heart and at lower levels in brain, testis, ovary and skeletal muscle. Up-regulated in some breast cancer cell lines. Isoform 1 and isoform 3 are expressed in fetal brain.

Evidence on tissue expression from TISSUES for AKIP1 Gene

  • Kidney(4.2)
  • Lymph node(4.2)
genes like me logo Genes that share expression patterns with AKIP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for AKIP1 Gene

Orthologs for AKIP1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for AKIP1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia AKIP1 33 34
  • 99.37 (n)
cow
(Bos Taurus)
Mammalia AKIP1 33 34
  • 85.43 (n)
dog
(Canis familiaris)
Mammalia AKIP1 33 34
  • 83.67 (n)
mouse
(Mus musculus)
Mammalia Akip1 33 16 34
  • 78.95 (n)
rat
(Rattus norvegicus)
Mammalia Akip1 33
  • 78.95 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia AKIP1 34
  • 38 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia AKIP1 34
  • 30 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii AKIP1 34
  • 35 (a)
OneToOne
Species where no ortholog for AKIP1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for AKIP1 Gene

ENSEMBL:
Gene Tree for AKIP1 (if available)
TreeFam:
Gene Tree for AKIP1 (if available)

Paralogs for AKIP1 Gene

Pseudogenes.org Pseudogenes for AKIP1 Gene

genes like me logo Genes that share paralogs with AKIP1: view

No data available for Paralogs for AKIP1 Gene

Variants for AKIP1 Gene

Sequence variations from dbSNP and Humsavar for AKIP1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000079087 -- 8,920,464(+) GGGGG(A/G)AAAAT intron-variant, downstream-variant-500B
rs1000255119 -- 8,914,623(+) CGGGG(A/T)TGCCA intron-variant
rs1000345368 -- 8,916,549(+) CTAAG(G/T)TGGAT intron-variant
rs1000418936 -- 8,916,923(+) GAAGA(A/G)AATGT intron-variant
rs1000744967 -- 8,918,507(+) GGAAT(C/T)GACAA intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for AKIP1 Gene

Variant ID Type Subtype PubMed ID
esv2759803 CNV gain 17122850
nsv435923 CNV deletion 17901297
nsv499766 OTHER inversion 21111241
nsv7215 OTHER inversion 18451855
nsv832062 CNV loss 17160897

Variation tolerance for AKIP1 Gene

Residual Variation Intolerance Score: 72.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.87; 74.12% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for AKIP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AKIP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for AKIP1 Gene

Disorders for AKIP1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for AKIP1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
breast cancer
  • breast cancer, invasive ductal
- elite association - COSMIC cancer census association via MalaCards
Search AKIP1 in MalaCards View complete list of genes associated with diseases

Relevant External Links for AKIP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AKIP1
genes like me logo Genes that share disorders with AKIP1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for AKIP1 Gene

Publications for AKIP1 Gene

  1. A-kinase-interacting protein 1 (AKIP1) acts as a molecular determinant of PKA in NF-kappaB signaling. (PMID: 20562110) Gao N … Okamoto T (The Journal of biological chemistry 2010) 2 3 4 60
  2. AKIP1 enhances NF-kappaB-dependent gene expression by promoting the nuclear retention and phosphorylation of p65. (PMID: 18178962) Gao N … Okamoto T (The Journal of biological chemistry 2008) 2 3 4 60
  3. A-kinase-interacting protein localizes protein kinase A in the nucleus. (PMID: 15630084) Sastri M … Taylor SS (Proceedings of the National Academy of Sciences of the United States of America 2005) 2 3 4 60
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60

Products for AKIP1 Gene

Sources for AKIP1 Gene

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