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Aliases for AIRN Gene

Subcategory (RNA class) for AIRN Gene

antisense

Quality Score for this RNA gene is

3

Aliases for AIRN Gene

  • Antisense Of IGF2R Non-Protein Coding RNA 2 3
  • IGF2R Antisense RNA 1 (Non-Protein Coding) 2 3
  • AIR 3 6
  • Antisense Of IGF2R RNA (Non-Protein Coding) 2
  • Non-Protein Coding RNA 88 2
  • NCRNA00088 3
  • IGF2R-AS1 3
  • IGF2R-AS 3
  • IGF2RAS 3

External Ids for AIRN Gene

ORGUL Members for AIRN Gene

Summaries for AIRN Gene

Entrez Gene Summary for AIRN Gene

  • Both spliced and un-spliced long non-coding RNAs are transcribed from this gene. This gene overlaps on the opposite strand the second intron of the insulin-like growth factor 2 receptor gene; a CpG island associated with the second intron denotes an active promoter that drives the expression of this gene. The related mouse gene is responsible for silencing the insulin-like growth factor 2 receptor gene and flanking genes in the imprinted gene cluster of mice. This gene may be expressed in Wilms tumors. [provided by RefSeq, Feb 2013]

GeneCards Summary for AIRN Gene

AIRN (Antisense Of IGF2R Non-Protein Coding RNA) is a RNA Gene, and belongs to antisense RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AIRN Gene

Genomics for AIRN Gene

Genomic Location for AIRN Gene

Start:
160,003,291 bp from pter
End:
160,007,664 bp from pter
Size:
4,374 bases
Orientation:
Minus strand

Genomic View for AIRN Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for AIRN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AIRN Gene

No data available for Regulatory Elements for AIRN Gene

Proteins for AIRN Gene

Post-translational modifications for AIRN Gene

No Post-translational modifications

No data available for DME Specific Peptides for AIRN Gene

Domains for AIRN Gene

Gene Families for AIRN Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with AIRN: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for AIRN Gene

Function for AIRN Gene

genes like me logo Genes that share phenotypes with AIRN: view

Animal Models for AIRN Gene

MGI Knock Outs for AIRN:

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , miRNA , Transcription Factor Targeting and HOMER Transcription for AIRN Gene

Localization for AIRN Gene

No data available for Gene Ontology (GO) - Cellular Components for AIRN Gene

Pathways for AIRN Gene

SuperPathways for AIRN Gene

No Data Available

Interacting Proteins for AIRN Gene

Gene Ontology (GO) - Biological Process for AIRN Gene

None

No data available for Pathways by source for AIRN Gene

Transcripts for AIRN Gene

mRNA/cDNA for AIRN Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AIRN Gene

Antisense of IGF2R non-protein coding RNA:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AIRN Gene

No ASD Table

Relevant External Links for AIRN Gene

GeneLoc Exon Structure for
AIRN
ECgene alternative splicing isoforms for
AIRN

Expression for AIRN Gene

mRNA expression in normal human tissues for AIRN Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for AIRN Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (6.7), Brain - Anterior cingulate cortex (BA24) (6.4), Brain - Cortex (6.0), and Brain - Hypothalamus (4.0).

SOURCE GeneReport for Unigene cluster for AIRN Gene Hs.742166

genes like me logo Genes that share expressions with AIRN: view

Orthologs for AIRN Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for AIRN Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Airn 16
Species with no ortholog for AIRN:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for AIRN Gene

ENSEMBL:
Gene Tree for AIRN (if available)
TreeFam:
Gene Tree for AIRN (if available)

Paralogs for AIRN Gene

No data available for Paralogs for AIRN Gene

Variants for AIRN Gene

Relevant External Links for AIRN Gene

HapMap Linkage Disequilibrium report
AIRN

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for AIRN Gene

Disorders for AIRN Gene

No disorders were found for AIRN Gene.

No data available for UniProtKB/Swiss-Prot for AIRN Gene

Publications for AIRN Gene

  1. Identification of the human homolog of the imprinted mouse Air non-coding RNA. (PMID: 18789384) Yotova I.Y. … Barlow D.P. (Genomics 2008) 2 3
  2. Silencing and transcriptional properties of the imprinted Airn ncRNA are independent of the endogenous promoter. (PMID: 19008856) Stricker S.H. … Barlow D.P. (EMBO J. 2008) 2 3
  3. Kcnq1ot1: a chromatin regulatory RNA. (PMID: 21345374) Kanduri C. (Semin. Cell Dev. Biol. 2011) 3
  4. Long non-coding RNA modifies chromatin: epigenetic silencing by long non-coding RNAs. (PMID: 21915889) Saxena A. … Carninci P. (Bioessays 2011) 3
  5. A downstream CpG island controls transcript initiation and elongation and the methylation state of the imprinted Airn macro ncRNA promoter. (PMID: 22396659) Koerner M.V. … Barlow D.P. (PLoS Genet. 2012) 3

Products for AIRN Gene

Sources for AIRN Gene

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