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Aliases & Descriptions for AHRR
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| AHH 2 | | AHHR 2 | | AhRR 3 | | BHLHE77 3 | | KIAA1234 1, 2, 3, 5 | | MGC167813 2 | | MGC176630 2 | | bHLHe77 1, 2, 3 |
| | | Descriptions |
|---|
| AhR repressor 3 | | Class E basic helix-loop-helix protein 77 3 | | aryl hydrocarbon hydroxylase regulator 2 | | aryl hydrocarbon receptor regulator 1, 2 | | aryl-hydrocarbon receptor repressor 2 | | arylhydrocarbon receptor repressor 2 | | dioxin receptor repressor 2 |
|
| | Search outside databases for aliases for AHRR genePrevious GC identifers: GC05U990138 GC05P000303 GC02U900446 GC05P000357 GC05P000325 |
Summaries for AHRR(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for AHRR: Dioxin is a teratogen that exerts its effects through the arylhydrocarbon receptor in conjunction with the receptor's binding partner, arylhydrocarbon receptor nuclear translocator. The protein encoded by this gene represses signal transduction by the arylhydrocarbon receptor by competing with the arylhydrocarbon receptor nuclear translocator for binding to the arylhydrocarbon receptor. Expression of the repressor is stimulated by the receptor/translocator heterodimer, thereby regulating receptor function through a negative feedback mechanism. In addition, the encoded protein can bind to nuclear factor kappa-B. [provided by RefSeq] UniProtKB/Swiss-Prot: AHRR_HUMAN, A9YTQ3Function: Mediates dioxin toxicity and is involved in regulation of cell growth and differentiation. Represses the transcription activity of AHR by competing with this transcription factor for heterodimer formation with the ARNT and subsequently binding to the xenobiotic response element (XRE) sequence present in the promoter regulatory region of variety of genes. Represses CYP1A1 by binding the XRE sequence and recruiting ANKRA2, HDAC4 and/or HDAC5. Autoregulates its expression by associating with its own XRE site |
Genomic Location for AHRR
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the AHRR gene 
Entrez Gene cytogenetic band: 5p15.3 Ensembl cytogenetic band: 5p15.33 HGNC cytogenetic band: 5p15.33AHRR Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure GeneLoc location for GC05P000327:
(about GC identifiers)
Start:
|
324,736 bp from pter |
End:
|
491,406 bp from pter |
Size:
|
166,671 bases |
Orientation:
|
plus strand |
| Proteins for AHRR
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: AHRR_HUMAN, A9YTQ3 (See
protein sequence)Recommended Name: Aryl hydrocarbon receptor repressor Size: 701 amino acids; 76239 Da
Subunit: Interacts with ARNT, ANKRA2, HDAC4 and HDAC5 (By similarity)
Subcellular location: Cytoplasm. Nucleus. Note=Predominantly in the nuclear compartment. First cytoplasmic, translocates into the nuclear compartment upon interaction with ARNT in the cytoplasmic compartment
Secondary accessions: A7MBN5 Q9HAZ3 Q9ULI6Alternative splicing: 3 isoforms: A9YTQ3-1 A9YTQ3-2 A9YTQ3-3 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_065782.2
ENSEMBL proteins: ENSP00000323816 ENSP00000264933
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
Antibodies for AHRR: Assays for AHRR: | Protein
Domains/ Families for AHRR(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry A9YTQ3
ProtoNet protein and cluster: A9YTQ3 UniProtKB/Swiss-Prot: AHRR_HUMAN, A9YTQ3Similarity: Contains 1 basic helix-loop-helix (bHLH) domainSimilarity: Contains 1 PAS (PER-ARNT-SIM) domain | Gene Function for AHRR
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_020731
Applied Biosystems Silencer® siRNAs for AHRR
Sigma-Aldrich siRNA for AHRR  Sigma-Aldrich shRNA Panels and shRNA for AHRR  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_020731                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_020731                                  untagged cDNA clones in CMV expression vector (see all 2): NM_020731 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_020731
UniProtKB/Swiss-Prot: AHRR_HUMAN, A9YTQ3Function: Mediates dioxin toxicity and is involved in regulation of cell growth and differentiation. Represses the transcription activity of AHR by competing with this transcription factor for heterodimer formation with the ARNT and subsequently binding to the xenobiotic response element (XRE) sequence present in the promoter regulatory region of variety of genes. Represses CYP1A1 by binding the XRE sequence and recruiting ANKRA2, HDAC4 and/or HDAC5. Autoregulates its expression by associating with its own XRE siteInduction: By 3-methylcholanthrene (3-MC) in MNCs from adults. By the heterodimer AHR/ARNT1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Ahrr):
| Pathways & Interactions for AHRR
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for AHRR (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for AHRR 
5/12 Interacting proteins for AHRR (ENSP000003238163) via UniProtKB, MINT, and/or STRING (see all 12
)About this table
|
Drugs & Compounds for AHRR(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for AHRR 1 Novoseek chemical compound relationship for AHRR gene
About this table
|
Transcripts for AHRR(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_020731
Sigma-Aldrich siRNA for AHRR  Sigma-Aldrich shRNA Panels and shRNA for AHRR  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_020731 REFSEQ mRNAs for AHRR gene: NM_020731.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_020731               OriGene GFP tagged cDNA clone in CMV expression vector: NM_020731                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_020731                                  untagged cDNA clones in CMV expression vector (see all 2): NM_020731  24/202 AceView cDNA sequences (see all 202
):CR608684 CB529916 BG654353 BX401012 BM693810 BU508015 BP352548 AA973056 BI822063 AI982775 BG655707 BX280779 BG166879 BU683989 AA825538 CR592133 AI469550 AW439592 AI984608 T34498 BM723201 AA883945 BX105815 BU193271
highest scoring ESTs for AHRR:AI472048 AI279974 AK127977 AL134427 AW573306 BC035358 BM682431 W93502 AA098916 AA883945
GeneLoc Exon Structure
5/20 Alternative Splicing Database (ASD) splice patterns (SP) for AHRR (see all 20
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | · | 1e | · | 1f | · | 1g | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | ^ | 5 | ^ | 6a | · | 6b | ^ | 7a | · | 7b | ^ | 8a | · | 8b | · | 8c | · | 8d | · | 8e | · | 8f | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | - |   | |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17a | · | 17b | · | 17c | · | 17d | · | 17e | ^ | 18a | · | 18b | ^ | 19 | ^ | 20a | · | 20b | ^ | 21a | · | 21b | ^ | 22 | ^ | 23a | · | 23b | · | 23c | · | 23d | |
| SP1: | - |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | - |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for AHRR
2 Ensembl transcripts including schematic representations: ENST00000316418
ENST00000264933
|
Expression for AHRR
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| AHRR expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for AHRR
1 / 2 / 3 5 probe-sets matching AHRR gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: -- UniProtKB/Swiss-Prot: AHRR_HUMAN, A9YTQ3Tissue specificity: Highly expressed in testis, lung, ovary, spleen and pancreas. Highly expressed in mononuclear cells (MNCs) from umbilical cord blood. Isoform 3 is highly expressed in lung, kidney, spleen and thymus. Down-regulated malignant tissue from different anatomical origins, including colon, breast, lung, stomach, cervix, and ovary |
Orthologs for AHRR
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for AHRR gene from 4 species
About this table Species with no ortholog for AHRR
ENSEMBL Gene Tree for AHRR | Paralogs for AHRR(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for AHRR gene
- AHR2
|
SNPs/Variants for AHRR(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| UniProtKB/Swiss-Prot: AHRR_HUMAN, A9YTQ3Polymorphism: The Ala-189 allele may be a susceptibility factor for dioxin-related male infertility. Homozygosity for Ala-189 is observed in azoospermic individuals at higher frequency than in normozoospermic individuals. Might also be associated with susceptibility to and severity of endometriosis
HapMap Linkage Disequilibrium images for AHRR (up to first 250kb)
|
Disorders & Mutations for AHRR
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 606517
5 Novoseek disease relationships for AHRR gene
About this table
Human Gene Mutation Database: AHRR Genetic Association Database: AHRR Human Genome Epidemiology Navigator: AHRR (510 documents)
|
Medical News for AHRR(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for AHRR (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/40 PubMed articles for AHRR gene (see all 40
):- Characterization of the aryl hydrocarbon receptor repressor gene and association of its Pro185Ala polymorphism with micropenis. (PubMed id 11835227)3, 4, 6 Fujita H....Kosaki K. (2002)
- Characteristic expression of aryl hydrocarbon receptor repressor gene in human tissues: organ-specific distribution and variable induction patterns in mononuclear cells. (PubMed id 14672759)1, 3, 4 Yamamoto J....Hara T. (2004)
- The aryl hydrocarbon receptor repressor is a putative tumor suppressor gene in multiple human cancers. (PubMed id 18172554)3, 4 Zudaire E....Cuttitta F. (2008)
- Analysis of the transcriptional regulation and molecular function of the aryl hydrocarbon receptor repressor in human cell lines. (PubMed id 17890447)3, 4 Haarmann-Stemmann T....Fritsche E. (2007)
- Identification of intracellular localization signals and of mechanisms underlining the nucleocytoplasmic shuttling of human aryl hydrocarbon receptor repressor. (PubMed id 17980155)3, 4 Kanno Y.... Inouye Y. (2007)
- The contribution of genetic variations of aryl hydrocarbon receptor pathway genes to male factor infertility. (PubMed id 17559847)3, 4 Merisalu A....Salumets A. (2007)
- Analysis of the AhR, ARNT, and AhRR gene polymorphisms: genetic contribution to endometriosis susceptibility and severity. (PubMed id 16084889)3, 4 Tsuchiya M.... Ikenoue T. (2005)
- Association of male infertility with Pro185Ala polymorphism in the aryl hydrocarbon receptor repressor gene: implication for the susceptibility to dioxins. (PubMed id 15474075)3, 4 Watanabe M....Ogata T. (2004)
- Structure and expression of the Ah receptor repressor gene. (PubMed id 11423533)2, 3 Baba T....Fujii-Kuriyama Y. (2001)
- Prediction of the coding sequences of unidentified human genes. XV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10574462)3, 4 Nagase T....Ohara O. (1999)
|
Search for AHRR
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing AHRR
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing AHRR
(According to HUGE)
About This Section
| |
Specialized Databases showing AHRR(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for AHRR(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for AHRR:

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Incremental update: 13 Oct 2009
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