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Aliases for AHCTF1P1 Gene

Aliases for AHCTF1P1 Gene

  • AT-Hook Containing Transcription Factor 1 Pseudogene 1 2 3
  • AT Hook Containing Transcription Factor 1 Pseudogene 2 3
  • ELYS Transcription Factor-Like Protein TMBS62 Pseudogene 3
  • AT Hook Containing Transcription Factor 1 Pseudogene 1 2
  • AC009487.2 5
  • ELYS-Like 3
  • AHCTF1P 3

External Ids for AHCTF1P1 Gene

Previous HGNC Symbols for AHCTF1P1 Gene

  • AHCTF1P

Previous GeneCards Identifiers for AHCTF1P1 Gene

  • GC02M162356

Summaries for AHCTF1P1 Gene

GeneCards Summary for AHCTF1P1 Gene

AHCTF1P1 (AT-Hook Containing Transcription Factor 1 Pseudogene 1) is a Pseudogene.

Additional gene information for AHCTF1P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AHCTF1P1 Gene

Genomics for AHCTF1P1 Gene

Regulatory Elements for AHCTF1P1 Gene

Enhancers for AHCTF1P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H161237 3 VISTA FANTOM5 Ensembl ENCODE 9.9 +269.4 269362 2 RB1 ZSCAN4 SIN3A NFXL1 GLIS2 ZNF366 SCRT2 EGR2 ZNF202 SMARCA5 TBR1 LINC01806 AHCTF1P1 SLC4A10 GC02M161236 GC02M161238
GH02H161158 1.4 ENCODE dbSUPER 18.2 +347.3 347278 3 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 LINC01806 AHCTF1P1 LOC105373719 GC02M160996
GH02H162063 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.4 -562.1 -562110 12 PKNOX1 FOXA2 ATF1 ARID4B DMAP1 YY1 ZNF143 FOS RUNX3 REST AHCTF1P1 DPP4 TANK ENSG00000230918 RPEP5
GH02H162027 1.2 ENCODE dbSUPER 11.1 -520.0 -519952 1 PKNOX1 FOXA2 ATF1 MLX ARID4B DMAP1 YY1 GTF3C2 FOS SP5 ENSG00000230918 DPP4 LOC101929512 AHCTF1P1 RPEP5
GH02H161546 0.4 FANTOM5 0.3 -38.9 -38939 0 CEBPG ENSG00000238570 AHCTF1P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AHCTF1P1 on UCSC Golden Path with GeneCards custom track

Promoters for AHCTF1P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000125432 101 399

Genomic Location for AHCTF1P1 Gene

Chromosome:
2
Start:
161,499,067 bp from pter
End:
161,507,902 bp from pter
Size:
8,836 bases
Orientation:
Minus strand

Genomic View for AHCTF1P1 Gene

Genes around AHCTF1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AHCTF1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AHCTF1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AHCTF1P1 Gene

Proteins for AHCTF1P1 Gene

Post-translational modifications for AHCTF1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AHCTF1P1 Gene

Domains & Families for AHCTF1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AHCTF1P1 Gene

Function for AHCTF1P1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for AHCTF1P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AHCTF1P1 Gene

Localization for AHCTF1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AHCTF1P1 Gene

Pathways & Interactions for AHCTF1P1 Gene

SuperPathways for AHCTF1P1 Gene

No Data Available

Interacting Proteins for AHCTF1P1 Gene

Gene Ontology (GO) - Biological Process for AHCTF1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AHCTF1P1 Gene

Drugs & Compounds for AHCTF1P1 Gene

No Compound Related Data Available

Transcripts for AHCTF1P1 Gene

mRNA/cDNA for AHCTF1P1 Gene

(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AHCTF1P1 Gene

AT hook containing transcription factor 1 pseudogene 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for AHCTF1P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for AHCTF1P1 Gene

No ASD Table

Relevant External Links for AHCTF1P1 Gene

GeneLoc Exon Structure for
AHCTF1P1
ECgene alternative splicing isoforms for
AHCTF1P1

Expression for AHCTF1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AHCTF1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of AHCTF1P1 Gene:

AHCTF1P1

SOURCE GeneReport for Unigene cluster for AHCTF1P1 Gene:

Hs.470435
genes like me logo Genes that share expression patterns with AHCTF1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AHCTF1P1 Gene

Orthologs for AHCTF1P1 Gene

Evolution for AHCTF1P1 Gene

ENSEMBL:
Gene Tree for AHCTF1P1 (if available)
TreeFam:
Gene Tree for AHCTF1P1 (if available)

No data available for Orthologs for AHCTF1P1 Gene

Paralogs for AHCTF1P1 Gene

No data available for Paralogs for AHCTF1P1 Gene

Variants for AHCTF1P1 Gene

Sequence variations from dbSNP and Humsavar for AHCTF1P1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000054611 -- 161,505,616(+) ACAAC(C/T)GCACA nc-transcript-variant
rs1000308454 -- 161,507,110(+) CAGTT(A/G)GAACT nc-transcript-variant
rs1000332071 -- 161,507,435(+) CACAG(C/G)TAAAA nc-transcript-variant
rs1000486458 -- 161,500,428(+) ATGAT(G/T)AGAAA nc-transcript-variant
rs1000848137 -- 161,502,530(+) TGAGC(A/G)GTCTT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for AHCTF1P1 Gene

Variant ID Type Subtype PubMed ID
nsv979141 CNV duplication 23825009

Relevant External Links for AHCTF1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AHCTF1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AHCTF1P1 Gene

Disorders for AHCTF1P1 Gene

Relevant External Links for AHCTF1P1

Genetic Association Database (GAD)
AHCTF1P1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AHCTF1P1

No disorders were found for AHCTF1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AHCTF1P1 Gene

Publications for AHCTF1P1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for AHCTF1P1 Gene

Sources for AHCTF1P1 Gene

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