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Aliases for AGPAT5 Gene

Aliases for AGPAT5 Gene

  • 1-Acylglycerol-3-Phosphate O-Acyltransferase 5 2 3 4
  • 1-Acylglycerol-3-Phosphate O-Acyltransferase 5 (Lysophosphatidic Acid Acyltransferase, Epsilon) 2 3
  • Lysophosphatidic Acid Acyltransferase Epsilon 3 4
  • 1-AGP Acyltransferase 5 3 4
  • 1-AGPAT 5 3 4
  • 1-Acyl-Sn-Glycerol-3-Phosphate Acyltransferase Epsilon 3
  • Lysophosphatidic Acid Acyltransferase 2
  • LPAAT-Epsilon 4
  • EC 2.3.1.51 4
  • Epsilon 2
  • 1AGPAT5 3
  • LPAATE 3

External Ids for AGPAT5 Gene

Previous GeneCards Identifiers for AGPAT5 Gene

  • GC08P006554
  • GC08P006346

Summaries for AGPAT5 Gene

Entrez Gene Summary for AGPAT5 Gene

  • This gene encodes a member of the 1-acylglycerol-3-phosphate O-acyltransferase family. This integral membrane protein converts lysophosphatidic acid to phosphatidic acid, the second step in de novo phospholipid biosynthesis. A pseudogene of this gene is present on the Y chromosome. [provided by RefSeq, Aug 2014]

GeneCards Summary for AGPAT5 Gene

AGPAT5 (1-Acylglycerol-3-Phosphate O-Acyltransferase 5) is a Protein Coding gene. Among its related pathways are Metabolism and Metabolism. GO annotations related to this gene include 1-acylglycerol-3-phosphate O-acyltransferase activity. An important paralog of this gene is AGPAT3.

UniProtKB/Swiss-Prot for AGPAT5 Gene

  • Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating an acyl moiety at the sn-2 position of the glycerol backbone. Acts on LPA containing saturated or unsaturated fatty acids C15:0-C20:4 at the sn-1 position using C18:1-CoA as the acyl donor. Also acts on lysophosphatidylethanolamine using oleoyl-CoA, but not arachidonoyl-CoA, and lysophosphatidylinositol using arachidonoyl-CoA, but not oleoyl-CoA. Activity toward lysophosphatidylglycerol not detectable.

Gene Wiki entry for AGPAT5 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGPAT5 Gene

Genomics for AGPAT5 Gene

Regulatory Elements for AGPAT5 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for AGPAT5 Gene

Start:
6,708,357 bp from pter
End:
6,761,503 bp from pter
Size:
53,147 bases
Orientation:
Plus strand

Genomic View for AGPAT5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for AGPAT5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGPAT5 Gene

Proteins for AGPAT5 Gene

  • Protein details for AGPAT5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NUQ2-PLCE_HUMAN
    Recommended name:
    1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon
    Protein Accession:
    Q9NUQ2
    Secondary Accessions:
    • Q8IZ47
    • Q9BQG4

    Protein attributes for AGPAT5 Gene

    Size:
    364 amino acids
    Molecular mass:
    42072 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA92069.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for AGPAT5 Gene

Proteomics data for AGPAT5 Gene at MOPED

Post-translational modifications for AGPAT5 Gene

  • Ubiquitination at Lys183
  • Modification sites at PhosphoSitePlus

Other Protein References for AGPAT5 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for AGPAT5 Gene

Domains for AGPAT5 Gene

Gene Families for AGPAT5 Gene

HGNC:
  • AGPAT :1-acylglycerol-3-phosphate O-acyltransferases

Protein Domains for AGPAT5 Gene

Suggested Antigen Peptide Sequences for AGPAT5 Gene

Graphical View of Domain Structure for InterPro Entry

Q9NUQ2

UniProtKB/Swiss-Prot:

PLCE_HUMAN :
  • Q9NUQ2
Domain:
  • The HXXXXD motif is essential for acyltransferase activity and may constitute the binding site for the phosphate moiety of the glycerol-3-phosphate.
Family:
  • Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
genes like me logo Genes that share domains with AGPAT5: view

Function for AGPAT5 Gene

Molecular function for AGPAT5 Gene

UniProtKB/Swiss-Prot BiophysicochemicalProperties: Kinetic parameters: KM=5.52 uM for LPA sn-1 C18:1; KM=16.30 uM for C18:1-CoA; Vmax=2.42 nmol/min/mg enzyme toward LPA sn-1 C18:1; Vmax=1.22 nmol/min/mg enzyme toward C18:1-CoA;
UniProtKB/Swiss-Prot CatalyticActivity: Acyl-CoA + 1-acyl-sn-glycerol 3-phosphate = CoA + 1,2-diacyl-sn-glycerol 3-phosphate
UniProtKB/Swiss-Prot Function: Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating an acyl moiety at the sn-2 position of the glycerol backbone. Acts on LPA containing saturated or unsaturated fatty acids C15:0-C20:4 at the sn-1 position using C18:1-CoA as the acyl donor. Also acts on lysophosphatidylethanolamine using oleoyl-CoA, but not arachidonoyl-CoA, and lysophosphatidylinositol using arachidonoyl-CoA, but not oleoyl-CoA. Activity toward lysophosphatidylglycerol not detectable.

Enzyme Numbers (IUBMB) for AGPAT5 Gene

Gene Ontology (GO) - Molecular Function for AGPAT5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity NAS 15367102
GO:0005515 protein binding IPI 25416956
GO:0016746 transferase activity, transferring acyl groups --
genes like me logo Genes that share ontologies with AGPAT5: view

Phenotypes for AGPAT5 Gene

MGI mutant phenotypes for AGPAT5:
inferred from 1 alleles
genes like me logo Genes that share phenotypes with AGPAT5: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for AGPAT5

In Situ Assay Products

Flow Cytometry Products

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for AGPAT5 Gene

Localization for AGPAT5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for AGPAT5 Gene

Endoplasmic reticulum membrane; Multi-pass membrane protein. Nucleus envelope. Mitochondrion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for AGPAT5 Gene COMPARTMENTS Subcellular localization image for AGPAT5 gene
Compartment Confidence
endoplasmic reticulum 5
mitochondrion 5
nucleus 5
cytosol 2
golgi apparatus 2
extracellular 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for AGPAT5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005635 nuclear envelope IEA --
GO:0005739 mitochondrion IDA --
GO:0005741 mitochondrial outer membrane TAS --
GO:0005789 endoplasmic reticulum membrane TAS --
genes like me logo Genes that share ontologies with AGPAT5: view

Pathways for AGPAT5 Gene

genes like me logo Genes that share pathways with AGPAT5: view

UniProtKB/Swiss-Prot Q9NUQ2-PLCE_HUMAN

  • Pathway: Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 2/3

Gene Ontology (GO) - Biological Process for AGPAT5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002244 hematopoietic progenitor cell differentiation IEA --
GO:0006639 acylglycerol metabolic process --
GO:0006644 phospholipid metabolic process TAS --
GO:0006654 phosphatidic acid biosynthetic process TAS --
GO:0008152 metabolic process --
genes like me logo Genes that share ontologies with AGPAT5: view

Compounds for AGPAT5 Gene

(54) HMDB Compounds for AGPAT5 Gene

Compound Synonyms Cas Number PubMed IDs
(2E)-Decenoyl-CoA
  • (E)-S-2-decenoate Coenzyme A
10018-95-8
(2E)-Dodecenoyl-CoA
  • 2-trans-Dodecenoyl-Coenzyme A
1066-12-2
(2E)-Hexadecenoyl-CoA
  • trans-2-Hexadecenoyl-CoA
4460-95-1
(2E)-Octenoyl-CoA
  • (E)-S-2-octenoate Coenzyme A
10018-94-7
(2E)-Tetradecenoyl-CoA
  • (2E)-Tetradecenoyl-Coenzyme A
38795-33-4
genes like me logo Genes that share compounds with AGPAT5: view

Transcripts for AGPAT5 Gene

Unigene Clusters for AGPAT5 Gene

1-acylglycerol-3-phosphate O-acyltransferase 5:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for AGPAT5

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for AGPAT5 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b ^ 10a · 10b · 10c
SP1: - - - -
SP2: - - - - - - - - -
SP3: - - - - -
SP4:
SP5: - - - - - -
SP6: - - - - - - - - - - - - -
SP7:
SP8:

Relevant External Links for AGPAT5 Gene

GeneLoc Exon Structure for
AGPAT5
ECgene alternative splicing isoforms for
AGPAT5

Expression for AGPAT5 Gene

mRNA expression in normal human tissues for AGPAT5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for AGPAT5 Gene

SOURCE GeneReport for Unigene cluster for AGPAT5 Gene Hs.624002

mRNA Expression by UniProt/SwissProt for AGPAT5 Gene

Q9NUQ2-PLCE_HUMAN
Tissue specificity: Widely expressed.
genes like me logo Genes that share expressions with AGPAT5: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for AGPAT5 Gene

Orthologs for AGPAT5 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for AGPAT5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia AGPAT5 35
  • 98.9 (n)
  • 99.45 (a)
AGPAT5 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia AGPAT5 35
  • 87.01 (n)
  • 85.17 (a)
AGPAT5 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia AGPAT5 35
  • 87.61 (n)
  • 87.84 (a)
AGPAT5 36
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Agpat5 35
  • 84.98 (n)
  • 82.14 (a)
Agpat5 16
Agpat5 36
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia AGPAT5 36
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 64 (a)
OneToMany
-- 36
  • 78 (a)
OneToMany
-- 36
  • 36 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Agpat5 35
  • 83.61 (n)
  • 81.56 (a)
chicken
(Gallus gallus)
Aves AGPAT5 35
  • 78.05 (n)
  • 77.69 (a)
AGPAT5 36
  • 77 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia AGPAT5 36
  • 71 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.23241 35
tropical clawed frog
(Silurana tropicalis)
Amphibia agpat5 35
  • 70.71 (n)
  • 69.7 (a)
zebrafish
(Danio rerio)
Actinopterygii agpat5 35
  • 65.38 (n)
  • 69.06 (a)
agpat5 36
  • 68 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea acl-11 35
  • 47.83 (n)
  • 34.18 (a)
acl-11 36
  • 33 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes -- 36
  • 18 (a)
ManyToMany
CST26 36
  • 16 (a)
ManyToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons LPAT4 35
  • 44.23 (n)
  • 30.07 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4157 36
  • 40 (a)
OneToOne
Species with no ortholog for AGPAT5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for AGPAT5 Gene

ENSEMBL:
Gene Tree for AGPAT5 (if available)
TreeFam:
Gene Tree for AGPAT5 (if available)

Paralogs for AGPAT5 Gene

Paralogs for AGPAT5 Gene

Pseudogenes.org Pseudogenes for AGPAT5 Gene

genes like me logo Genes that share paralogs with AGPAT5: view

Variants for AGPAT5 Gene

Sequence variations from dbSNP and Humsavar for AGPAT5 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs367952 -- 6,731,548(-) tgaac(A/C)aataa intron-variant
rs377849 -- 6,750,086(-) TGAGG(C/G)CAACA intron-variant
rs589251 -- 6,738,142(+) gctgt(G/T)tagtg intron-variant
rs714508 -- 6,723,566(+) ATGCA(A/G)TTCTG intron-variant
rs929975 -- 6,749,265(-) GCCTC(C/T)CTCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AGPAT5 Gene

Variant ID Type Subtype PubMed ID
esv2422383 CNV Duplication 17116639
nsv831220 CNV Gain 17160897
nsv6059 CNV Insertion 18451855
nsv465436 CNV Gain 19166990
esv2546871 CNV Deletion 19546169
esv2145090 CNV Deletion 18987734
esv4888 CNV Deletion 18987735
esv2584030 CNV Deletion 19546169
esv2736536 CNV Deletion 23290073
esv992826 CNV Deletion 20482838
esv7258 CNV Loss 19470904
nsv819007 CNV Gain 19587683

Relevant External Links for AGPAT5 Gene

HapMap Linkage Disequilibrium report
AGPAT5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for AGPAT5 Gene

Disorders for AGPAT5 Gene

Relevant External Links for AGPAT5

Genetic Association Database (GAD)
AGPAT5
Human Genome Epidemiology (HuGE) Navigator
AGPAT5
genes like me logo Genes that share disorders with AGPAT5: view

No data available for UniProtKB/Swiss-Prot for AGPAT5 Gene

Publications for AGPAT5 Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  4. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 48
  5. Enzymatic activities of the human AGPAT isoform 3 and isoform 5: localization of AGPAT5 to mitochondria. (PMID: 21173190) Prasad S.S. … Agarwal A.K. (J. Lipid Res. 2011) 3 4

Products for AGPAT5 Gene

Sources for AGPAT5 Gene

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