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Aliases for AGPAT4-IT1 Gene

Subcategory (RNA class) for AGPAT4-IT1 Gene


Quality Score for this RNA gene is


Aliases for AGPAT4-IT1 Gene

  • AGPAT4 Intronic Transcript 1 2 3 4 5
  • AGPAT4 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NCRNA00241 3 4
  • C6orf59 3 4
  • Chromosome 6 Open Reading Frame 59 2
  • Non-Protein Coding RNA 241 2

External Ids for AGPAT4-IT1 Gene

ORGUL Members for AGPAT4-IT1 Gene

Previous HGNC Symbols for AGPAT4-IT1 Gene

  • C6orf59
  • NCRNA00241

Previous GeneCards Identifiers for AGPAT4-IT1 Gene

  • GC06M161583

Summaries for AGPAT4-IT1 Gene

GeneCards Summary for AGPAT4-IT1 Gene

AGPAT4-IT1 (AGPAT4 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGPAT4-IT1 Gene

Genomics for AGPAT4-IT1 Gene

Regulatory Elements for AGPAT4-IT1 Gene

Enhancers for AGPAT4-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F161160 0.6 ENCODE 0.8 +1.3 1348 0.9 AGPAT4-IT1 PIR56804
GH06F161163 0.2 ENCODE 0.8 -1.7 -1722 0.2 MAX MNT AGPAT4-IT1 PIR49622
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around AGPAT4-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for AGPAT4-IT1 Gene

161,160,105 bp from pter
161,161,982 bp from pter
1,878 bases
Minus strand

Genomic View for AGPAT4-IT1 Gene

Genes around AGPAT4-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGPAT4-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGPAT4-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGPAT4-IT1 Gene

Proteins for AGPAT4-IT1 Gene

  • Protein details for AGPAT4-IT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein encoded by AGPAT4-IT1
    Protein Accession:
    Secondary Accessions:
    • A7E1X1
    • Q2M1M7
    • Q5TEF2
    • Q9H5S5

    Protein attributes for AGPAT4-IT1 Gene

    198 amino acids
    Molecular mass:
    20949 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAB15545.1; Type=Frameshift; Positions=66; Evidence={ECO:0000305};

neXtProt entry for AGPAT4-IT1 Gene

Post-translational modifications for AGPAT4-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGPAT4-IT1 Gene

Domains & Families for AGPAT4-IT1 Gene

Protein Domains for AGPAT4-IT1 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AGPAT4-IT1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AGPAT4-IT1 Gene

Function for AGPAT4-IT1 Gene

Phenotypes for AGPAT4-IT1 Gene

genes like me logo Genes that share phenotypes with AGPAT4-IT1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGPAT4-IT1 Gene

Localization for AGPAT4-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AGPAT4-IT1 Gene

Pathways & Interactions for AGPAT4-IT1 Gene

SuperPathways for AGPAT4-IT1 Gene

No Data Available

Interacting Proteins for AGPAT4-IT1 Gene

Gene Ontology (GO) - Biological Process for AGPAT4-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for AGPAT4-IT1 Gene

Transcripts for AGPAT4-IT1 Gene

mRNA/cDNA for AGPAT4-IT1 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(153) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AGPAT4-IT1 Gene

AGPAT4 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AGPAT4-IT1 Gene

No ASD Table

Relevant External Links for AGPAT4-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for AGPAT4-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AGPAT4-IT1 Gene

mRNA expression in normal human tissues for AGPAT4-IT1 Gene

SOURCE GeneReport for Unigene cluster for AGPAT4-IT1 Gene:

genes like me logo Genes that share expression patterns with AGPAT4-IT1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for AGPAT4-IT1 Gene

Orthologs for AGPAT4-IT1 Gene

Evolution for AGPAT4-IT1 Gene

Gene Tree for AGPAT4-IT1 (if available)
Gene Tree for AGPAT4-IT1 (if available)

No data available for Orthologs for AGPAT4-IT1 Gene

Paralogs for AGPAT4-IT1 Gene

No data available for Paralogs for AGPAT4-IT1 Gene

Variants for AGPAT4-IT1 Gene

Sequence variations from dbSNP and Humsavar for AGPAT4-IT1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs112398748 -- 161,162,621(+) TTTAT(A/G)ACACG intron-variant, upstream-variant-2KB
rs112620274 -- 161,163,113(+) CTTGA(A/G)TACAT intron-variant, upstream-variant-2KB
rs113134548 -- 161,161,021(+) AGCAC(-/GTGGGAGTGA)GAAAG intron-variant, nc-transcript-variant
rs113283241 -- 161,160,631(+) GGACC(A/G)TGCAG intron-variant, nc-transcript-variant
rs113793426 -- 161,161,223(+) CCCGG(C/T)GTGTC intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for AGPAT4-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv1026543 CNV gain 25217958
nsv1030852 CNV gain 25217958
nsv528938 CNV loss 19592680

Relevant External Links for AGPAT4-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AGPAT4-IT1 Gene

Disorders for AGPAT4-IT1 Gene

Relevant External Links for AGPAT4-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for AGPAT4-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGPAT4-IT1 Gene

Publications for AGPAT4-IT1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4 64
  3. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for AGPAT4-IT1 Gene

Sources for AGPAT4-IT1 Gene

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