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Aliases for AGPAT4-IT1 Gene

Subcategory (RNA class) for AGPAT4-IT1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for AGPAT4-IT1 Gene

  • AGPAT4 Intronic Transcript 1 2 3 4
  • AGPAT4 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NCRNA00241 3 4
  • C6orf59 3 4
  • Chromosome 6 Open Reading Frame 59 2
  • Non-Protein Coding RNA 241 2

External Ids for AGPAT4-IT1 Gene

ORGUL Members for AGPAT4-IT1 Gene

Previous HGNC Symbols for AGPAT4-IT1 Gene

  • C6orf59
  • NCRNA00241

Previous GeneCards Identifiers for AGPAT4-IT1 Gene

  • GC06M161583

Summaries for AGPAT4-IT1 Gene

GeneCards Summary for AGPAT4-IT1 Gene

AGPAT4-IT1 (AGPAT4 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGPAT4-IT1 Gene

Genomics for AGPAT4-IT1 Gene

Genomic Location for AGPAT4-IT1 Gene

Start:
161,160,105 bp from pter
End:
161,161,982 bp from pter
Size:
1,878 bases
Orientation:
Minus strand

Genomic View for AGPAT4-IT1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for AGPAT4-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGPAT4-IT1 Gene

No data available for Regulatory Elements for AGPAT4-IT1 Gene

Proteins for AGPAT4-IT1 Gene

  • Protein details for AGPAT4-IT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H0P7-AGIT1_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by AGPAT4-IT1
    Protein Accession:
    Q9H0P7
    Secondary Accessions:
    • A7E1X1
    • Q2M1M7
    • Q5TEF2
    • Q9H5S5

    Protein attributes for AGPAT4-IT1 Gene

    Size:
    198 amino acids
    Molecular mass:
    20949 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB15545.1; Type=Frameshift; Positions=66; Evidence={ECO:0000305};

neXtProt entry for AGPAT4-IT1 Gene

Proteomics data for AGPAT4-IT1 Gene at MOPED

Post-translational modifications for AGPAT4-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGPAT4-IT1 Gene

Domains for AGPAT4-IT1 Gene

Gene Families for AGPAT4-IT1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for AGPAT4-IT1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AGPAT4-IT1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AGPAT4-IT1 Gene

Function for AGPAT4-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for AGPAT4-IT1 Gene

Localization for AGPAT4-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AGPAT4-IT1 Gene

Pathways for AGPAT4-IT1 Gene

SuperPathways for AGPAT4-IT1 Gene

No Data Available

Interacting Proteins for AGPAT4-IT1 Gene

Gene Ontology (GO) - Biological Process for AGPAT4-IT1 Gene

None

No data available for Pathways by source for AGPAT4-IT1 Gene

Transcripts for AGPAT4-IT1 Gene

mRNA/cDNA for AGPAT4-IT1 Gene

(153) Selected AceView cDNA sequences:
(5) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AGPAT4-IT1 Gene

AGPAT4 intronic transcript 1 (non-protein coding):
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate AGPAT4-IT1
    • Block miRNA regulation of AGPAT4-IT1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for AGPAT4-IT1

    Primer Products

    • OriGene qSTAR qPCR primer pairs in human,mouse,rat for AGPAT4-IT1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for AGPAT4-IT1 Gene

    No ASD Table

    Relevant External Links for AGPAT4-IT1 Gene

    GeneLoc Exon Structure for
    AGPAT4-IT1
    ECgene alternative splicing isoforms for
    AGPAT4-IT1

    Expression for AGPAT4-IT1 Gene

    mRNA expression in normal human tissues for AGPAT4-IT1 Gene

    mRNA expression in normal human tissues for AGPAT4-IT1 Gene

    SOURCE GeneReport for Unigene cluster for AGPAT4-IT1 Gene Hs.664873

    genes like me logo Genes that share expressions with AGPAT4-IT1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for AGPAT4-IT1 Gene

    Orthologs for AGPAT4-IT1 Gene

    Evolution for AGPAT4-IT1 Gene

    ENSEMBL:
    Gene Tree for AGPAT4-IT1 (if available)
    TreeFam:
    Gene Tree for AGPAT4-IT1 (if available)

    No data available for Orthologs for AGPAT4-IT1 Gene

    Paralogs for AGPAT4-IT1 Gene

    No data available for Paralogs for AGPAT4-IT1 Gene

    Variants for AGPAT4-IT1 Gene

    Structural Variations from Database of Genomic Variants (DGV) for AGPAT4-IT1 Gene

    Variant ID Type Subtype PubMed ID
    nsv886817 CNV Gain 21882294
    nsv528938 CNV Loss 19592680

    Relevant External Links for AGPAT4-IT1 Gene

    HapMap Linkage Disequilibrium report
    AGPAT4-IT1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for AGPAT4-IT1 Gene

    Disorders for AGPAT4-IT1 Gene

    No disorders were found for AGPAT4-IT1 Gene.

    No data available for UniProtKB/Swiss-Prot for AGPAT4-IT1 Gene

    Publications for AGPAT4-IT1 Gene

    1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4
    2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

    Products for AGPAT4-IT1 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate AGPAT4-IT1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for AGPAT4-IT1
      • Block miRNA regulation of AGPAT4-IT1 using miScript Target Protectors

      Sources for AGPAT4-IT1 Gene

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