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Aliases for AGFG2 Gene

Aliases for AGFG2 Gene

  • ArfGAP With FG Repeats 2 2 3
  • HRBL 3 4 6
  • RABR 3 4 6
  • Rev/Rex Activation Domain-Binding Protein Related 3 4
  • HIV-1 Rev-Binding Protein-Like Protein 3 4
  • Arf-GAP Domain And FG Repeats-Containing Protein 2 3
  • Rev/Rex Activation Domain Binding Protein-Related 3
  • Arf-GAP Domain And FG Repeat-Containing Protein 2 3
  • HIV-1 Rev Binding Protein-Like 2
  • Nucleoporin 3
  • RAB-R 4

External Ids for AGFG2 Gene

Previous HGNC Symbols for AGFG2 Gene

  • HRBL

Previous GeneCards Identifiers for AGFG2 Gene

  • GC07P099976
  • GC07P100136
  • GC07P094769

Summaries for AGFG2 Gene

Entrez Gene Summary for AGFG2 Gene

  • This gene is a member of the HIV-1 Rev binding protein (HRB) family and encodes a protein with one Arf-GAP zinc finger domain, several phe-gly (FG) motifs, and four asn-pro-phe (NPF) motifs. This protein interacts with Eps15 homology (EH) domains and plays a role in the Rev export pathway, which mediates the nucleocytoplasmic transfer of proteins and RNAs. Alternatively spliced transcript variants have been described, but their biological validity has not been determined. [provided by RefSeq, Feb 2013]

GeneCards Summary for AGFG2 Gene

AGFG2 (ArfGAP With FG Repeats 2) is a Protein Coding gene. Diseases associated with AGFG2 include xerophthalmia and hiv-1. An important paralog of this gene is AGFG1.

Gene Wiki entry for AGFG2 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGFG2 Gene

Genomics for AGFG2 Gene

Regulatory Elements for AGFG2 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for AGFG2 Gene

Start:
100,539,211 bp from pter
End:
100,568,220 bp from pter
Size:
29,010 bases
Orientation:
Plus strand

Genomic View for AGFG2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for AGFG2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGFG2 Gene

Proteins for AGFG2 Gene

  • Protein details for AGFG2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O95081-AGFG2_HUMAN
    Recommended name:
    Arf-GAP domain and FG repeat-containing protein 2
    Protein Accession:
    O95081
    Secondary Accessions:
    • O75429
    • Q96AB9
    • Q96GL4

    Protein attributes for AGFG2 Gene

    Size:
    481 amino acids
    Molecular mass:
    48963 Da
    Quaternary structure:
    • Interacts with EPS15R.
    SequenceCaution:
    • Sequence=AAC78803.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for AGFG2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for AGFG2 Gene

Proteomics data for AGFG2 Gene at MOPED

Post-translational modifications for AGFG2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for AGFG2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for AGFG2 Gene

Domains for AGFG2 Gene

Gene Families for AGFG2 Gene

HGNC:
  • ArfGAP :ADP-ribosylation factor GTPase activating proteins

Protein Domains for AGFG2 Gene

Suggested Antigen Peptide Sequences for AGFG2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O95081

UniProtKB/Swiss-Prot:

AGFG2_HUMAN :
  • O95081
Domain:
  • Contains FG repeats and 4 N-P-F repeats
  • Contains 1 Arf-GAP domain.
genes like me logo Genes that share domains with AGFG2: view

Function for AGFG2 Gene

Gene Ontology (GO) - Molecular Function for AGFG2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0008270 zinc ion binding IEA --
genes like me logo Genes that share ontologies with AGFG2: view
genes like me logo Genes that share phenotypes with AGFG2: view

Animal Model Products

CRISPR Products

miRNA for AGFG2 Gene

miRTarBase miRNAs that target AGFG2

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for AGFG2

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for AGFG2 Gene

Localization for AGFG2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for AGFG2 Gene COMPARTMENTS Subcellular localization image for AGFG2 gene
Compartment Confidence
cytosol 2
nucleus 2

Gene Ontology (GO) - Cellular Components for AGFG2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IDA 19946888
genes like me logo Genes that share ontologies with AGFG2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for AGFG2 Gene

Pathways for AGFG2 Gene

SuperPathways for AGFG2 Gene

No Data Available

Interacting Proteins for AGFG2 Gene

Gene Ontology (GO) - Biological Process for AGFG2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
GO:0043547 positive regulation of GTPase activity --
genes like me logo Genes that share ontologies with AGFG2: view

No data available for Pathways by source for AGFG2 Gene

Transcripts for AGFG2 Gene

Unigene Clusters for AGFG2 Gene

ArfGAP with FG repeats 2:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for AGFG2

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for AGFG2 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13
SP1: - -
SP2: - -
SP3: -

Relevant External Links for AGFG2 Gene

GeneLoc Exon Structure for
AGFG2
ECgene alternative splicing isoforms for
AGFG2

Expression for AGFG2 Gene

mRNA expression in normal human tissues for AGFG2 Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for AGFG2 Gene

SOURCE GeneReport for Unigene cluster for AGFG2 Gene Hs.521083

genes like me logo Genes that share expressions with AGFG2: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for AGFG2 Gene

Orthologs for AGFG2 Gene

This gene was present in the common ancestor of animals.

Orthologs for AGFG2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia AGFG2 35
  • 99.17 (n)
  • 99.17 (a)
AGFG2 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia AGFG2 35
  • 88.94 (n)
  • 89.74 (a)
AGFG2 36
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia AGFG2 35
  • 88.96 (n)
  • 86.67 (a)
AGFG2 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Agfg2 35
  • 82.56 (n)
  • 82.98 (a)
Agfg2 16
Agfg2 36
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia AGFG2 36
  • 67 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia AGFG2 36
  • 61 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia AGFG2 36
  • 54 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii AGFG2 36
  • 28 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta drongo 36
  • 16 (a)
OneToMany
Species with no ortholog for AGFG2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for AGFG2 Gene

ENSEMBL:
Gene Tree for AGFG2 (if available)
TreeFam:
Gene Tree for AGFG2 (if available)

Paralogs for AGFG2 Gene

Paralogs for AGFG2 Gene

Selected SIMAP similar genes for AGFG2 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with AGFG2: view

Variants for AGFG2 Gene

Sequence variations from dbSNP and Humsavar for AGFG2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs741784 -- 100,562,302(-) CTGGC(A/G/T)GGTGC synonymous-codon, reference
rs1985523 -- 100,551,914(-) ttccc(C/T)acttt intron-variant
rs2018312 -- 100,551,936(-) TGTTG(G/T)ATTGT intron-variant
rs2406243 -- 100,552,355(-) tcctc(C/T)aatat intron-variant
rs2406244 -- 100,551,504(-) AAACA(C/G)GCCgg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AGFG2 Gene

Variant ID Type Subtype PubMed ID
esv2734888 CNV Deletion 23290073
dgv7398n71 CNV Loss 21882294
nsv888779 CNV Loss 21882294
dgv7399n71 CNV Loss 21882294
dgv7400n71 CNV Loss 21882294
nsv831072 CNV Loss 17160897

Relevant External Links for AGFG2 Gene

HapMap Linkage Disequilibrium report
AGFG2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for AGFG2 Gene

Disorders for AGFG2 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (2) Diseases for AGFG2 Gene including...

Search for AGFG2 Gene in MalaCards »

(2) University of Copenhagen DISEASES for AGFG2 Gene

genes like me logo Genes that share disorders with AGFG2: view

No data available for UniProtKB/Swiss-Prot for AGFG2 Gene

Publications for AGFG2 Gene

  1. Large-scale sequencing of two regions in human chromosome 7q22: analysis of 650 kb of genomic sequence around the EPO and CUTL1 loci reveals 17 genes. (PMID: 9799793) Gloeckner G. … Rosenthal A. (Genome Res. 1998) 2 3 4
  2. The eps15 homology (EH) domain-based interaction between eps15 and hrb connects the molecular machinery of endocytosis to that of nucleocytosolic transport. (PMID: 10613896) Doria M. … Di Fiore P.P. (J. Cell Biol. 1999) 3 23
  3. Binding specificity and in vivo targets of the EH domain, a novel protein-protein interaction module. (PMID: 9303539) Salcini A.E. … Di Fiore P.P. (Genes Dev. 1997) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Cellular proteins and HIV-1 Rev function. (PMID: 19149558) Suhasini M. … Reddy T.R. (Curr. HIV Res. 2009) 3

Products for AGFG2 Gene

Sources for AGFG2 Gene

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