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Aliases & Descriptions for AGER
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases MGC22357 2 OTTHUMP00000029155 2 OTTHUMP00000029156 2 RAGE 1 , 2 , 3 , 5
Descriptions Receptor for advanced glycosylation end products 3 advanced glycosylation end product-specific receptor 2 receptor for advanced glycosylation end-products 2
Search outside databases for aliases for AGER genePrevious GC identifers: GC06M032175 GC06M031920 GC06M032220
Summaries for AGER (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for AGER : This gene encodes a member of the immunoglobulin superfamily of cell surface molecules. It is areceptor for various molecules, including the amyloidogenic form of serum amyloid A, amyloid-betaprotein, members of the S100/calgranulin superfamily and advanced glycation end products. The genelies within the major histocompatibility complex (MHC) class III region on chromosome 6.Alternative splicing results in two transcript variants encoding different isoforms. [provided byRefSeq] UniProtKB/Swiss-Prot: RAGE_HUMAN, Q15109 Function : Mediates interactions of advanced glycosylation end products (AGE). These arenonenzymatically glycosylated proteins which accumulate in vascular tissue in aging and at anaccelerated rate in diabetes. Receptor for amyloid beta peptide
Gene Wiki entry for AGER (RAGE)
Genomic Location for AGER
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the AGER gene Entrez Gene cytogenetic band: 6p21.3 Ensembl cytogenetic band: 6p21.32 HGNC cytogenetic band: 6p21.3 AGER Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure
GeneLoc location for GC06M032256:
(about GC identifiers )
Start:
32,256,723 bp from pter
End:
32,260,001 bp from pter
Size:
3,279 bases
Orientation:
minus strand
2 alternative locations : Chr 6-,c6_COX 32,244,477-32,247,754 Chr 6-,c6_QBL 32,249,222-32,252,499
RefSeq DNA sequence: NC_000006.10 NT_007592.14 NT_113891.1 NT_113896.1 Proteins for AGER
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: RAGE_HUMAN, Q15109 (See
protein sequence )Recommended Name: Advanced glycosylation end product-specific receptor precursor Size : 404 amino acids; 42803 Da
Subcellular location : Isoform 1: Cell membrane; Single-pass type I membrane protein
Subcellular location : Isoform 2: Secreted
PDB structures from and Proteopedia : 1PWI (3D)
 2BJP (3D)
 2E5E (3D)
 2ENS (3D)
 3CJJ (3D)
 
Secondary accessions : Q15279 Q9H2X7 Q9Y3R3Alternative splicing : 2 isoforms : Q15109-1 Q15109-2
REFSEQ proteins (2 alternative transcripts):
NP_001127.1 NP_751947.1 ENSEMBL proteins: ENSP00000364195 ENSP00000364196 ENSP00000364199 ENSP00000364201 ENSP00000364208 ENSP00000364217 ENSP00000364211 ENSP00000364206 ENSP00000364210 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for AGER: Assays for AGER:
Protein
Domains/ Families for AGER(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q15109 ProtoNet protein and cluster: Q15109
2 Blocks protein families : IPB003598 Immunoglobulin C-2 type IPB013162 CD80-like C2-set immunoglobulin UniProtKB/Swiss-Prot: RAGE_HUMAN, Q15109 Similarity : Contains 2 Ig-like C2-type (immunoglobulin-like) domainsSimilarity : Contains 1 Ig-like V-type (immunoglobulin-like) domain
Gene Function for AGER
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_172197 Applied Biosystems Silencer ® siRNAs for AGER Sigma-Aldrich siRNA and siRNA Panels for AGER Sigma-Aldrich shRNA for AGER Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001136                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001136                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001136  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001136 UniProtKB/Swiss-Prot: RAGE_HUMAN, Q15109 Function : Mediates interactions of advanced glycosylation end products (AGE). These arenonenzymatically glycosylated proteins which accumulate in vascular tissue in aging and at anaccelerated rate in diabetes. Receptor for amyloid beta peptide
Genatlas biochemistry entry for AGER :receptor of advanced glycosylation end products of proteins,mediating amyloid beta peptide effecton neurons and microglia
13 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Ager) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for AGER
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for AGER 5/10 Interacting proteins for AGER (ENSP00000364211 3 Q15109 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 10
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for AGER (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for AGER 10/16 Novoseek chemical compound relationships for AGER gene (see all 16
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
n(epsilon)-(carboxymethyl)lysine
78.71
15
10531386 (2), 10966490 (2), 15213320 (1), 11700025 (1) (see all 5 )
pentosidine
70.62
9
15213278 (1), 11576932 (1), 16315765 (1), 10966490 (1) (see all 5 )
3-deoxyglucosone
64.39
2
15213320 (1)
gw9662
58.98
2
17004092 (1), 18855759 (1)
glucose
40.69
13
15770917 (2), 17960513 (2), 15213320 (1), 14670831 (1) (see all 9 )
oxygen
30.33
19
15553663 (2), 16712480 (1), 18049312 (1), 18616999 (1) (see all 15 )
nadph
26.05
8
15574998 (2), 15830106 (2), 19252229 (1), 15297385 (1) (see all 5 )
aldose
23.75
1
16037296 (1)
gdp
11.98
1
15213320 (1)
nitric oxide
8.58
14
18256374 (1), 19252229 (1), 17190908 (1), 15574998 (1) (see all 7 )
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Transcripts for AGER(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_172197 Sigma-Aldrich siRNA and siRNA Panels for AGER Sigma-Aldrich shRNA for AGER Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001136 NM_172197
REFSEQ mRNAs for AGER gene (2 alternative transcripts): NM_001136.3 NM_172197.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001136 NM_172197
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001136                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001136                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001136  
Additional cDNA sequence: AB036432.1 AB061668.1 AB061669.1 AF536236.1 AF536237.1 AF537303.1 AJ133822.1 AK298100.1 AK313178.1 AY755619.1 AY755620.1 AY755621.1 AY755622.1 AY755623.1 AY755624.1 AY755625.1 AY755626.1 AY755627.1 AY755628.1 BC020669.1 DQ104251.1 DQ104252.1 DQ104253.1 DQ104254.1 EU117141.1 EU428811.1 EU428812.1 EU428813.1 EU428814.1 EU428815.1 EU428816.1 EU826616.1 EU826617.1 EU826618.1 EU826619.1 EU826620.1 FJ545655.1 M91211.1
11 DOTS entries : DT.100642746 DT.121378339 DT.121378379 DT.121378225 DT.121378333 DT.91637899 DT.101985408 DT.95371256 DT.91722873 DT.91722860 DT.97832209
24/307 AceView cDNA sequences (see all 307
):BU622208 AB061668 BM992910 BX092491 BM714937 BU521990 BU899237 R78183 BF476466 CR601493 AW177611 AI057090 AW177609 BM547314 AW177610 BF309711 CD722009 CA449935 BF205468 CD615126 CD251257 BM726610 BQ023810 BM702297
highest scoring ESTs for AGER :M91211 AB036432 AB061668 AB061669 BC020669 BG483796 BG484869 BG506672 BG529831 BG529866
Unigene Cluster for AGER: Advanced glycosylation end product-specific receptor Hs.534342 [show with all ESTs ] Unigene Representative Sequence: AK298100 GeneLoc Exon Structure 9 Ensembl transcripts including schematic representations : ENST00000375055
ENST00000375056
ENST00000375059
ENST00000375061
ENST00000375067
ENST00000375076
ENST00000375070
ENST00000375065
ENST00000375069
Expression for AGER
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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AGER expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for AGER 1 / 2 / 3
5 probe-sets matching AGER gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TGTGTCAGAGSOURCE GeneReport for Unigene cluster: Hs.534342 Expression variation in blood from EXPOLDB for AGER
UniProtKB/Swiss-Prot: RAGE_HUMAN, Q15109 Tissue specificity : Endothelial cells
Orthologs for AGER
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for AGER gene from 5 species
About this table Species with no ortholog for AGER ENSEMBL Gene Tree for AGER Paralogs for AGER (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for AGER (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for AGER (up to first 250kb)
Disorders & Mutations for AGER
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 600214 10/58 Novoseek disease relationships for AGER gene (see all 58
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
diabetic angiopathies
70.78
1
17462779 (1)
diabetic nephropathies
63.66
28
8559486 (4), 16936199 (3), 10966490 (3), 17667983 (2) (see all 11 )
atherosclerosis
62.73
31
10421989 (2), 17097822 (2), 19217461 (2), 15666591 (1) (see all 21 )
hyperglycemia
62.12
5
11694852 (1), 14670831 (1), 15638868 (1), 9797717 (1) (see all 5 )
microangiopathy diabetic
60.52
6
18855759 (2), 15823719 (1), 15224502 (1), 16146671 (1) (see all 5 )
diabetic retinopathy
57.01
16
18331234 (2), 16047941 (2), 17251488 (2), 16216433 (1) (see all 12 )
diabetes mellitus
54.20
8
18331234 (1), 9044315 (1), 14578938 (1), 9797717 (1)
inflammation
48.61
33
19292913 (3), 17117586 (3), 15213278 (2), 18331236 (1) (see all 24 )
vascular diseases
48.12
25
19275767 (5), 7887450 (3), 16356122 (2), 9044300 (1) (see all 9 )
glomerulosclerosis
43.83
2
16936199 (1), 11457879 (1)
About this table Human Gene Mutation Database : AGER Genetic Association Database: AGER Human Genome Epidemiology Navigator: AGER (17 documents)
Medical News for AGER (Possibly Related Articles in
Doctor's Guide )
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Publications for AGER (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/399 PubMed articles for AGER gene (see all 399
): Effects of novel polymorphisms in the RAGE gene on transcriptional regulation and their association with diabetic retinopathy. (PubMed id 11375354) 3, 4, 6 Hudson B.I....Grant P.J. (2001) Cloning and expression of a cell surface receptor for advanced glycosylation end products of proteins. (PubMed id 1378843) 1, 3, 4 Neeper M.... Shaw A. (1992) -429T/C and -374T/A polymorphisms of RAGE gene promoter are not associated with diabetic retinopathy in Chinese patients with type 2 diabetes. (PubMed id 12941744) 1, 3, 6 JiXiong X....ShuQin L. (2003) Association of Gly82Ser polymorphism in the RAGE gene with diabetic retinopathy in type II diabetic Asian Indian patients. (PubMed id 12477623) 1, 3, 6 Kumaramanickavel G....Sharma T. (2002) Three genes in the human MHC class III region near the junction with the class II: gene for receptor of advanced glycosylation end products, PBX2 homeobox gene and a notch homolog, human counterpart of mouse mammary tumor gene int-3. (PubMed id 7835890) 1, 3, 4 Sugaya K.... Ikemura T. (1994) Haplotype analysis of the RAGE gene: identification of a haplotype marker for diabetic nephropathy in type 2 diabetes mellitus. (PubMed id 15790669) 3, 6 Kankova K....Znojil V. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The functional -374 T/A RAGE gene polymorphism is associated with proteinuria and cardiovascular disease in type 1 diabetic patients. (PubMed id 12606536) 3, 6 Pettersson-Fernholm K....Groop P.H. (2003) The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404) 3, 4 Mungall A.J.... Beck S. (2003) The - 429 T/C and - 374 T/A gene polymorphisms of the receptor of advanced glycation end products gene are not risk factors for diabetic retinopathy in Caucasians with type 2 diabetes. (PubMed id 14704946) 3, 6 Globocnik Petrovic M....Petrovic D. (2003)
Search for AGER
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Genome Databases showing AGER
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing AGER
(According to HUGE )
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Specialized Databases showing AGER (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for AGER (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Recombinant Proteins (RAGE ) Antibodies (RAGE )
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009