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Aliases for AGBL5-IT1 Gene

Subcategory (RNA class) for AGBL5-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for AGBL5-IT1 Gene

  • AGBL5 Intronic Transcript 1 2 3 5
  • AGBL5 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for AGBL5-IT1 Gene

Previous GeneCards Identifiers for AGBL5-IT1 Gene

  • GC00U933879
  • GC02P027288

Summaries for AGBL5-IT1 Gene

GeneCards Summary for AGBL5-IT1 Gene

AGBL5-IT1 (AGBL5 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for AGBL5-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGBL5-IT1 Gene

Genomics for AGBL5-IT1 Gene

Regulatory Elements for AGBL5-IT1 Gene

Enhancers for AGBL5-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H027662 1.2 ENCODE 20.7 +602.6 602608 2.4 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 ZC3H11A NFYC IFT172 ZNF512 SUPT7L CAD EIF2B4 GPN1 GTF3C2 ENSG00000272148 NRBP1 SNX17
GH02H027719 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +659.7 659710 2.5 SIN3A GLI4 BRCA1 ZNF2 ZNF416 ATF7 FOS SP3 TSHZ1 ZNF623 SUPT7L CAD ZNF512 EIF2B4 GPN1 GTF3C2 ZNF513 AGBL5 GTF3C2-AS1 LOC105374363
GH02H026342 1.4 ENCODE dbSUPER 11.4 -715.3 -715269 6.3 HDGF PKNOX1 FOXA2 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 CAD GTF3C2-AS1 ASXL2 ENSG00000272148 AGBL5 KIF3C GAREM2 ADGRF3 AGBL5-IT1 ENSG00000272056
GH02H027049 1.2 ENCODE 11.8 -10.0 -9970 3.2 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC PPARGC1A ZNF512 CAD EIF2B4 NRBP1 IFT172 SUPT7L GPN1 KHK LOC105374363 ATRAID
GH02H027055 0.8 ENCODE 0.7 -4.5 -4538 1.8 HDAC1 TAL1 PYGO2 FOSL1 CCNT2 TCF12 CTBP1 FOXK2 GATA2 NCOR1 KHK LOC100129724 MAPRE3 LOC105374337 LOC105374363 AGBL5-IT1 ENSG00000272056
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AGBL5-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AGBL5-IT1 Gene

Genomic Locations for AGBL5-IT1 Gene
chr2:27,061,038-27,061,815
(GRCh38/hg38)
Size:
778 bases
Orientation:
Plus strand
chr2:27,283,906-27,284,683
(GRCh37/hg19)

Genomic View for AGBL5-IT1 Gene

Genes around AGBL5-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGBL5-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGBL5-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for AGBL5-IT1 Gene

Proteins for AGBL5-IT1 Gene

Post-translational modifications for AGBL5-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGBL5-IT1 Gene

Domains & Families for AGBL5-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AGBL5-IT1 Gene

Function for AGBL5-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGBL5-IT1 Gene

Localization for AGBL5-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AGBL5-IT1 Gene

Pathways & Interactions for AGBL5-IT1 Gene

SuperPathways for AGBL5-IT1 Gene

No Data Available

Interacting Proteins for AGBL5-IT1 Gene

Gene Ontology (GO) - Biological Process for AGBL5-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AGBL5-IT1 Gene

Drugs & Compounds for AGBL5-IT1 Gene

No Compound Related Data Available

Transcripts for AGBL5-IT1 Gene

mRNA/cDNA for AGBL5-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for AGBL5-IT1 Gene

No ASD Table

Relevant External Links for AGBL5-IT1 Gene

GeneLoc Exon Structure for
AGBL5-IT1
ECgene alternative splicing isoforms for
AGBL5-IT1

Expression for AGBL5-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AGBL5-IT1 Gene

genes like me logo Genes that share expression patterns with AGBL5-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AGBL5-IT1 Gene

Orthologs for AGBL5-IT1 Gene

Evolution for AGBL5-IT1 Gene

ENSEMBL:
Gene Tree for AGBL5-IT1 (if available)
TreeFam:
Gene Tree for AGBL5-IT1 (if available)

No data available for Orthologs for AGBL5-IT1 Gene

Paralogs for AGBL5-IT1 Gene

No data available for Paralogs for AGBL5-IT1 Gene

Variants for AGBL5-IT1 Gene

Relevant External Links for AGBL5-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGBL5-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AGBL5-IT1 Gene

Disorders for AGBL5-IT1 Gene

No disorders were found for AGBL5-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AGBL5-IT1 Gene

Publications for AGBL5-IT1 Gene

No publications were found for AGBL5-IT1 Gene.

Products for AGBL5-IT1 Gene

Sources for AGBL5-IT1 Gene

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