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Aliases for AGBL5-IT1 Gene

Subcategory (RNA class) for AGBL5-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for AGBL5-IT1 Gene

  • AGBL5 Intronic Transcript 1 2 3 5
  • AGBL5 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for AGBL5-IT1 Gene

Previous GeneCards Identifiers for AGBL5-IT1 Gene

  • GC00U933879
  • GC02P027288

Summaries for AGBL5-IT1 Gene

GeneCards Summary for AGBL5-IT1 Gene

AGBL5-IT1 (AGBL5 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGBL5-IT1 Gene

Genomics for AGBL5-IT1 Gene

Regulatory Elements for AGBL5-IT1 Gene

Enhancers for AGBL5-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F026766 1.4 FANTOM5 ENCODE 11.4 -291.0 -290978 6.7 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 ENSG00000272148 KHK AGBL5-IT1 DPYSL5 MAPRE3 SNX17 ADGRF3 CENPA CDKN2AIPNLP2
GH02F026612 1.1 Ensembl ENCODE 11.4 -446.2 -446242 5.3 CTCF PKNOX1 ZMYM3 ZNF644 ZIC2 RAD21 GATA3 ZNF766 POLR2A SMC3 ENSG00000272148 AGBL5-IT1 C2orf70 GC02P026627
GH02F027582 1.1 ENCODE 11.4 +522.3 522321 2.6 HDGF CREB3L1 MLX ARID4B SIN3A YBX1 DMAP1 YY1 ZNF207 ZNF143 SNX17 ENSG00000272148 GTF3C2 CAD GPN1 AGBL5-IT1 NRBP1 ENSG00000259080
GH02F027179 1 ENCODE 9.9 +120.1 120057 3.8 ATF1 ZFP64 YY1 ZNF121 FOS ZNF202 REST PPARG ZNF623 ZNF518A CAD GTF3C2-AS1 GTF3C2 LOC105374363 GPN1 NRBP1 ATRAID PPM1G ENSG00000272148 ZNF513
GH02F027055 1 ENCODE 0.8 -4.5 -4538 1.8 ATF1 ARID4B ZNF2 ZNF766 GATA2 ZNF143 FOS ZNF263 MXD4 REST KHK NRBP1 GTF3C2 ZNF513 ZNF512 CAD LOC100129724 MAPRE3 LOC105374337 GPN1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AGBL5-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for AGBL5-IT1 Gene

Chromosome:
2
Start:
27,061,038 bp from pter
End:
27,061,815 bp from pter
Size:
778 bases
Orientation:
Plus strand

Genomic View for AGBL5-IT1 Gene

Genes around AGBL5-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGBL5-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGBL5-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for AGBL5-IT1 Gene

Proteins for AGBL5-IT1 Gene

Post-translational modifications for AGBL5-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGBL5-IT1 Gene

Domains & Families for AGBL5-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AGBL5-IT1 Gene

Function for AGBL5-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGBL5-IT1 Gene

Localization for AGBL5-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AGBL5-IT1 Gene

Pathways & Interactions for AGBL5-IT1 Gene

SuperPathways for AGBL5-IT1 Gene

No Data Available

Interacting Proteins for AGBL5-IT1 Gene

Gene Ontology (GO) - Biological Process for AGBL5-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AGBL5-IT1 Gene

Transcripts for AGBL5-IT1 Gene

mRNA/cDNA for AGBL5-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for AGBL5-IT1 Gene

No ASD Table

Relevant External Links for AGBL5-IT1 Gene

GeneLoc Exon Structure for
AGBL5-IT1
ECgene alternative splicing isoforms for
AGBL5-IT1

Expression for AGBL5-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AGBL5-IT1 Gene

genes like me logo Genes that share expression patterns with AGBL5-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for AGBL5-IT1 Gene

Orthologs for AGBL5-IT1 Gene

Evolution for AGBL5-IT1 Gene

ENSEMBL:
Gene Tree for AGBL5-IT1 (if available)
TreeFam:
Gene Tree for AGBL5-IT1 (if available)

No data available for Orthologs for AGBL5-IT1 Gene

Paralogs for AGBL5-IT1 Gene

No data available for Paralogs for AGBL5-IT1 Gene

Variants for AGBL5-IT1 Gene

Relevant External Links for AGBL5-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGBL5-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AGBL5-IT1 Gene

Disorders for AGBL5-IT1 Gene

No disorders were found for AGBL5-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AGBL5-IT1 Gene

Publications for AGBL5-IT1 Gene

No publications were found for AGBL5-IT1 Gene.

Products for AGBL5-IT1 Gene

Sources for AGBL5-IT1 Gene

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