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Aliases for AGBL5-AS1 Gene

Subcategory (RNA class) for AGBL5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for AGBL5-AS1 Gene

  • AGBL5 Antisense RNA 1 2 3 5
  • AGBL5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for AGBL5-AS1 Gene

Previous GeneCards Identifiers for AGBL5-AS1 Gene

  • GC00U933882
  • GC02M027278

Summaries for AGBL5-AS1 Gene

GeneCards Summary for AGBL5-AS1 Gene

AGBL5-AS1 (AGBL5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGBL5-AS1 Gene

Genomics for AGBL5-AS1 Gene

Regulatory Elements for AGBL5-AS1 Gene

Enhancers for AGBL5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G027090 1.6 Ensembl ENCODE dbSUPER 10.4 -43.7 -43652 6.6 HNRNPUL1 FOXA2 MLX CREB3L1 ZFP64 ARID4B DMAP1 YY1 SLC30A9 ZNF766 KHK ZNF513 CGREF1 ABHD1 ATRAID SLC5A6 CAD PRR30 TCF23 PREB
GH02G026970 1.4 FANTOM5 ENCODE 10.6 +78.6 78637 2.9 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 YY1 ZNF143 ZNF207 KHK LOC100129724 LOC105374337 AGBL5 AGBL5-AS1 DPYSL5 EMILIN1 ATRAID SLC5A6 MAPRE3
GH02G026981 1.1 Ensembl ENCODE 10.6 +67.7 67748 1.2 ELF3 HDGF FOXA2 NFIB ARID4B RAD21 YY1 SLC30A9 ZNF143 MIXL1 LOC105374337 LOC100129724 AGBL5 AGBL5-AS1 DPYSL5 MAPRE3
GH02G026900 1.2 ENCODE dbSUPER 9.7 +149.0 148976 0.9 ATF1 MLX ARID4B SIN3A DMAP1 ZNF48 YY1 ZNF766 SP3 SP5 DPYSL5 MAPRE3 LOC100129724 LOC105374337 AGBL5 AGBL5-AS1 PREB PIR42524
GH02G026977 0.9 ENCODE 10.6 +72.1 72072 1.5 PKNOX1 ATF1 TCF12 GATA2 FOS PAF1 SP3 TSHZ1 MBD2 SMARCA4 LOC105374337 LOC100129724 AGBL5 AGBL5-AS1 MAPRE3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AGBL5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for AGBL5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000114370 -836 2601 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263

Genomic Location for AGBL5-AS1 Gene

Chromosome:
2
Start:
27,049,683 bp from pter
End:
27,050,264 bp from pter
Size:
582 bases
Orientation:
Minus strand

Genomic View for AGBL5-AS1 Gene

Genes around AGBL5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGBL5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGBL5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGBL5-AS1 Gene

Proteins for AGBL5-AS1 Gene

Post-translational modifications for AGBL5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGBL5-AS1 Gene

Domains & Families for AGBL5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AGBL5-AS1 Gene

Function for AGBL5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGBL5-AS1 Gene

Localization for AGBL5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AGBL5-AS1 Gene

Pathways & Interactions for AGBL5-AS1 Gene

SuperPathways for AGBL5-AS1 Gene

No Data Available

Interacting Proteins for AGBL5-AS1 Gene

Gene Ontology (GO) - Biological Process for AGBL5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AGBL5-AS1 Gene

Drugs & Compounds for AGBL5-AS1 Gene

No Compound Related Data Available

Transcripts for AGBL5-AS1 Gene

mRNA/cDNA for AGBL5-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for AGBL5-AS1 Gene

No ASD Table

Relevant External Links for AGBL5-AS1 Gene

GeneLoc Exon Structure for
AGBL5-AS1
ECgene alternative splicing isoforms for
AGBL5-AS1

Expression for AGBL5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AGBL5-AS1 Gene

genes like me logo Genes that share expression patterns with AGBL5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AGBL5-AS1 Gene

Orthologs for AGBL5-AS1 Gene

Evolution for AGBL5-AS1 Gene

ENSEMBL:
Gene Tree for AGBL5-AS1 (if available)
TreeFam:
Gene Tree for AGBL5-AS1 (if available)

No data available for Orthologs for AGBL5-AS1 Gene

Paralogs for AGBL5-AS1 Gene

No data available for Paralogs for AGBL5-AS1 Gene

Variants for AGBL5-AS1 Gene

Sequence variations from dbSNP and Humsavar for AGBL5-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000397623 -- 27,050,479(+) CCGGA(A/G)CTCCA upstream-variant-2KB
rs1000428857 -- 27,050,197(+) GGCGG(A/C)CCGGG nc-transcript-variant, upstream-variant-2KB
rs1001930277 -- 27,050,648(+) TCCGG(C/G)TTTCT upstream-variant-2KB
rs1002288432 -- 27,051,403(+) CACAC(C/G)ATGTC upstream-variant-2KB
rs1002658099 -- 27,050,922(+) GGGGA(A/C)AGGCT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for AGBL5-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv6744n54 CNV loss 21841781
nsv455974 CNV loss 19166990
nsv817673 CNV gain 17921354

Relevant External Links for AGBL5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGBL5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AGBL5-AS1 Gene

Disorders for AGBL5-AS1 Gene

Relevant External Links for AGBL5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AGBL5-AS1

No disorders were found for AGBL5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGBL5-AS1 Gene

Publications for AGBL5-AS1 Gene

No publications were found for AGBL5-AS1 Gene.

Products for AGBL5-AS1 Gene

Sources for AGBL5-AS1 Gene

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