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Aliases for AGBL4-IT1 Gene

Subcategory (RNA class) for AGBL4-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for AGBL4-IT1 Gene

  • AGBL4 Intronic Transcript 1 2 3 5
  • AGBL4 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for AGBL4-IT1 Gene

Previous GeneCards Identifiers for AGBL4-IT1 Gene

  • GC00U933373
  • GC01M049840

Summaries for AGBL4-IT1 Gene

GeneCards Summary for AGBL4-IT1 Gene

AGBL4-IT1 (AGBL4 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGBL4-IT1 Gene

Genomics for AGBL4-IT1 Gene

Genomic Location for AGBL4-IT1 Gene

Chromosome:
1
Start:
49,374,201 bp from pter
End:
49,472,085 bp from pter
Size:
97,885 bases
Orientation:
Minus strand

Genomic View for AGBL4-IT1 Gene

Genes around AGBL4-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGBL4-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGBL4-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGBL4-IT1 Gene

No data available for Regulatory Elements for AGBL4-IT1 Gene

Proteins for AGBL4-IT1 Gene

Post-translational modifications for AGBL4-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGBL4-IT1 Gene

Domains & Families for AGBL4-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AGBL4-IT1 Gene

Function for AGBL4-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGBL4-IT1 Gene

Localization for AGBL4-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AGBL4-IT1 Gene

Pathways & Interactions for AGBL4-IT1 Gene

SuperPathways for AGBL4-IT1 Gene

No Data Available

Interacting Proteins for AGBL4-IT1 Gene

Gene Ontology (GO) - Biological Process for AGBL4-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AGBL4-IT1 Gene

Transcripts for AGBL4-IT1 Gene

mRNA/cDNA for AGBL4-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for AGBL4-IT1 Gene

No ASD Table

Relevant External Links for AGBL4-IT1 Gene

GeneLoc Exon Structure for
AGBL4-IT1
ECgene alternative splicing isoforms for
AGBL4-IT1

Expression for AGBL4-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AGBL4-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for AGBL4-IT1 Gene

This gene is overexpressed in Testis (x25.2), Brain - Putamen (basal ganglia) (x8.7), Brain - Frontal Cortex (BA9) (x6.7), Brain - Cortex (x6.6), and Pituitary (x5.7).
genes like me logo Genes that share expression patterns with AGBL4-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for AGBL4-IT1 Gene

Orthologs for AGBL4-IT1 Gene

Evolution for AGBL4-IT1 Gene

ENSEMBL:
Gene Tree for AGBL4-IT1 (if available)
TreeFam:
Gene Tree for AGBL4-IT1 (if available)

No data available for Orthologs for AGBL4-IT1 Gene

Paralogs for AGBL4-IT1 Gene

No data available for Paralogs for AGBL4-IT1 Gene

Variants for AGBL4-IT1 Gene

Sequence variations from dbSNP and Humsavar for AGBL4-IT1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10159133 -- 49,402,450(+) aggag(A/C)atatt intron-variant
rs10489426 -- 49,462,391(-) CCTCA(A/C)TCTCC intron-variant
rs111243097 -- 49,374,702(+) CCACT(A/G)GATTT intron-variant
rs111249651 -- 49,473,710(+) TAGAT(A/C)AATGT intron-variant, upstream-variant-2KB
rs111249859 -- 49,423,682(+) TGGTA(A/C/T)ACACC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AGBL4-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv546196 CNV loss 21841781
nsv546195 CNV loss 21841781
nsv546194 CNV loss 21841781
nsv518328 CNV loss 19592680
nsv516709 CNV loss 19592680
nsv1014234 CNV loss 25217958
nsv1011949 CNV loss 25217958
nsv1006879 CNV loss 25217958
nsv1003151 CNV loss 25217958
esv3585998 CNV loss 21293372
esv3585997 CNV loss 21293372
esv3585995 CNV loss 21293372
esv3585993 CNV loss 21293372
esv3585992 CNV loss 21293372
esv3577845 CNV loss 25503493
esv3561793 CNV deletion 23714750
esv3351275 CNV insertion 20981092
esv3306252 CNV mobile element insertion 20981092
esv2764215 CNV loss 21179565
esv2760076 CNV loss 21179565
esv2662284 CNV deletion 23128226
dgv33e212 CNV loss 25503493
dgv265n54 CNV loss 21841781
dgv163n100 CNV loss 25217958
dgv162n100 CNV loss 25217958

Relevant External Links for AGBL4-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGBL4-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AGBL4-IT1 Gene

Disorders for AGBL4-IT1 Gene

Relevant External Links for AGBL4-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AGBL4-IT1

No disorders were found for AGBL4-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGBL4-IT1 Gene

Publications for AGBL4-IT1 Gene

No publications were found for AGBL4-IT1 Gene.

Products for AGBL4-IT1 Gene

Sources for AGBL4-IT1 Gene

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