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Aliases for AGBL3 Gene

Aliases for AGBL3 Gene

  • ATP/GTP Binding Protein Like 3 2 3 5
  • CCP3 3 4
  • ATP/GTP-Binding Protein-Like 3 4
  • Cytosolic Carboxypeptidase 3 3
  • EC 3.4.17.- 4
  • EC 3.4.17 61

External Ids for AGBL3 Gene

Previous GeneCards Identifiers for AGBL3 Gene

  • GC07P134129
  • GC07P134321
  • GC07P134671
  • GC07P128973

Summaries for AGBL3 Gene

GeneCards Summary for AGBL3 Gene

AGBL3 (ATP/GTP Binding Protein Like 3) is a Protein Coding gene. GO annotations related to this gene include metallocarboxypeptidase activity. An important paralog of this gene is AGBL2.

UniProtKB/Swiss-Prot for AGBL3 Gene

  • Metallocarboxypeptidase that mediates both deglutamylation and deaspartylation of target proteins. Catalyzes the deglutamylation of polyglutamate side chains generated by post-translational polyglutamylation in proteins such as tubulins. Also removes gene-encoded polyglutamates or polyaspartates from the carboxy-terminus of target proteins such as MYLK. Does not show detyrosinase or deglycylase activities from the carboxy-terminus of tubulin.

  • Isoform 2: Metallocarboxypeptidase that mediates tubulin deglutamylation.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGBL3 Gene

Genomics for AGBL3 Gene

Regulatory Elements for AGBL3 Gene

Enhancers for AGBL3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G135146 1.8 FANTOM5 ENCODE dbSUPER 11.2 +163.0 163043 6.6 HDGF FOXA2 PKNOX1 MLX ARNT ARID4B SIN3A YBX1 YY1 ZNF766 TMEM140 C7orf49 AGBL3 WDR91 CNOT4 GC07M135162 PIR50393
GH07G135206 1.6 Ensembl ENCODE dbSUPER 10.5 +220.6 220570 1.6 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ENSG00000231794 WDR91 STRA8 C7orf49 TMEM140 AGBL3 MIR6509
GH07G135163 1.4 ENCODE dbSUPER 11.4 +182.0 181975 9.2 MLX CREB3L1 AGO1 ZFP64 DMAP1 YY1 ZNF143 SP3 SSRP1 ZNF610 ENSG00000231794 WDR91 C7orf49 TMEM140 ENSG00000273219 AGBL3 ENSG00000272941
GH07G134961 1.1 dbSUPER 12.3 -23.8 -23799 1.7 PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF766 ZNF143 SP3 ENSG00000273219 AGBL3 ENSG00000231794 WDR91 CALD1 GC07P134970 PIR46779
GH07G134931 1.3 Ensembl ENCODE dbSUPER 10.1 -53.5 -53503 2.4 HDGF ZNF133 NFXL1 YBX1 MCM3 SMARCA4 IKZF1 NBN ZNF24 IRF1 AGBL3 CALD1 PIR46779 GC07P134970
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AGBL3 on UCSC Golden Path with GeneCards custom track

Promoters for AGBL3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000218539 392 1801 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF143 KLF13

Genomic Location for AGBL3 Gene

Chromosome:
7
Start:
134,986,508 bp from pter
End:
135,147,963 bp from pter
Size:
161,456 bases
Orientation:
Plus strand

Genomic View for AGBL3 Gene

Genes around AGBL3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGBL3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGBL3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGBL3 Gene

Proteins for AGBL3 Gene

  • Protein details for AGBL3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NEM8-CBPC3_HUMAN
    Recommended name:
    Cytosolic carboxypeptidase 3
    Protein Accession:
    Q8NEM8
    Secondary Accessions:
    • B7Z827
    • Q9H965

    Protein attributes for AGBL3 Gene

    Size:
    1001 amino acids
    Molecular mass:
    116011 Da
    Cofactor:
    Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for AGBL3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for AGBL3 Gene

Selected DME Specific Peptides for AGBL3 Gene

Q8NEM8:
  • ARVHPGE
  • DAQLLRD
  • KEGTGRVVMW
  • PMLNPDGV

Post-translational modifications for AGBL3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Domains & Families for AGBL3 Gene

Gene Families for AGBL3 Gene

Protein Domains for AGBL3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for AGBL3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NEM8

UniProtKB/Swiss-Prot:

CBPC3_HUMAN :
  • Belongs to the peptidase M14 family.
Family:
  • Belongs to the peptidase M14 family.
genes like me logo Genes that share domains with AGBL3: view

Function for AGBL3 Gene

Molecular function for AGBL3 Gene

UniProtKB/Swiss-Prot Function:
Metallocarboxypeptidase that mediates both deglutamylation and deaspartylation of target proteins. Catalyzes the deglutamylation of polyglutamate side chains generated by post-translational polyglutamylation in proteins such as tubulins. Also removes gene-encoded polyglutamates or polyaspartates from the carboxy-terminus of target proteins such as MYLK. Does not show detyrosinase or deglycylase activities from the carboxy-terminus of tubulin.
UniProtKB/Swiss-Prot Function:
Isoform 2: Metallocarboxypeptidase that mediates tubulin deglutamylation.

Enzyme Numbers (IUBMB) for AGBL3 Gene

Gene Ontology (GO) - Molecular Function for AGBL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004181 metallocarboxypeptidase activity IDA,IEA 17244817
GO:0008233 peptidase activity IEA --
GO:0008237 metallopeptidase activity IEA --
GO:0008270 zinc ion binding IEA --
GO:0016787 hydrolase activity IEA --
genes like me logo Genes that share ontologies with AGBL3: view
genes like me logo Genes that share phenotypes with AGBL3: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for AGBL3 Gene

Localization for AGBL3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for AGBL3 Gene

Cytoplasm, cytosol.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for AGBL3 gene
Compartment Confidence
cytosol 5
nucleus 3
cytoskeleton 2
mitochondrion 2

Gene Ontology (GO) - Cellular Components for AGBL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005829 cytosol IEA --
genes like me logo Genes that share ontologies with AGBL3: view

Pathways & Interactions for AGBL3 Gene

SuperPathways for AGBL3 Gene

No Data Available

Interacting Proteins for AGBL3 Gene

Gene Ontology (GO) - Biological Process for AGBL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006508 proteolysis IEA --
GO:0035610 protein side chain deglutamylation IEA --
genes like me logo Genes that share ontologies with AGBL3: view

No data available for Pathways by source and SIGNOR curated interactions for AGBL3 Gene

Drugs & Compounds for AGBL3 Gene

No Compound Related Data Available

Transcripts for AGBL3 Gene

Unigene Clusters for AGBL3 Gene

ATP/GTP binding protein-like 3:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for AGBL3 Gene

No ASD Table

Relevant External Links for AGBL3 Gene

GeneLoc Exon Structure for
AGBL3
ECgene alternative splicing isoforms for
AGBL3

Expression for AGBL3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AGBL3 Gene

mRNA differential expression in normal tissues according to GTEx for AGBL3 Gene

This gene is overexpressed in Testis (x9.3).

Protein differential expression in normal tissues from HIPED for AGBL3 Gene

This gene is overexpressed in Placenta (23.4), Fetal gut (18.0), and Esophagus (6.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for AGBL3 Gene



NURSA nuclear receptor signaling pathways regulating expression of AGBL3 Gene:

AGBL3

SOURCE GeneReport for Unigene cluster for AGBL3 Gene:

Hs.648616
genes like me logo Genes that share expression patterns with AGBL3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AGBL3 Gene

Orthologs for AGBL3 Gene

This gene was present in the common ancestor of animals.

Orthologs for AGBL3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia AGBL3 34 35
  • 99.71 (n)
dog
(Canis familiaris)
Mammalia AGBL3 34 35
  • 87.24 (n)
cow
(Bos Taurus)
Mammalia AGBL3 35 34
  • 87.23 (n)
OneToOne
rat
(Rattus norvegicus)
Mammalia Agbl3 34
  • 83.24 (n)
mouse
(Mus musculus)
Mammalia Agbl3 34 16 35
  • 82.79 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia AGBL3 35
  • 61 (a)
OneToOne
chicken
(Gallus gallus)
Aves AGBL3 35 34
  • 65.01 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia AGBL3 35
  • 67 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta NnaD 35
  • 23 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 69 (a)
OneToMany
Species where no ortholog for AGBL3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for AGBL3 Gene

ENSEMBL:
Gene Tree for AGBL3 (if available)
TreeFam:
Gene Tree for AGBL3 (if available)

Paralogs for AGBL3 Gene

Variants for AGBL3 Gene

Sequence variations from dbSNP and Humsavar for AGBL3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000002142 -- 135,061,961(+) TAGAT(C/T)ACTTT intron-variant
rs1000021723 -- 135,131,449(+) AAAGG(-/A)AACAA intron-variant
rs1000055145 -- 134,984,911(+) TAATC(C/T)CAGTA upstream-variant-2KB
rs1000059457 -- 135,007,287(+) TTCAT(C/T)AGCAA intron-variant
rs1000075846 -- 135,074,707(+) TTCCA(A/G)GTTAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AGBL3 Gene

Variant ID Type Subtype PubMed ID
esv2662841 CNV deletion 23128226
esv2676287 CNV deletion 23128226
esv2735185 CNV deletion 23290073
esv3615109 CNV loss 21293372
esv3615111 CNV loss 21293372
esv3891208 CNV loss 25118596
nsv523222 CNV gain 19592680
nsv527174 CNV loss 19592680
nsv608458 CNV loss 21841781
nsv970581 CNV duplication 23825009

Variation tolerance for AGBL3 Gene

Gene Damage Index Score: 5.91; 74.37% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for AGBL3 Gene

Human Gene Mutation Database (HGMD)
AGBL3
SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGBL3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for AGBL3 Gene

Disorders for AGBL3 Gene

Relevant External Links for AGBL3

Genetic Association Database (GAD)
AGBL3
Human Genome Epidemiology (HuGE) Navigator
AGBL3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AGBL3

No disorders were found for AGBL3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGBL3 Gene

Publications for AGBL3 Gene

  1. The cytosolic carboxypeptidases CCP2 and CCP3 catalyze posttranslational removal of acidic amino acids. (PMID: 25103237) Tort O. … Janke C. (Mol. Biol. Cell 2014) 3 4 64
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  3. Nna1-like proteins are active metallocarboxypeptidases of a new and diverse M14 subfamily. (PMID: 17244817) Rodriguez de la Vega M. … Aviles F.X. (FASEB J. 2007) 3 4 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for AGBL3 Gene

Sources for AGBL3 Gene

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