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Aliases for AGBL1-AS1 Gene

Subcategory (RNA class) for AGBL1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for AGBL1-AS1 Gene

  • AGBL1 Antisense RNA 1 2 3 5

External Ids for AGBL1-AS1 Gene

Previous GeneCards Identifiers for AGBL1-AS1 Gene

  • GC15M086840

Summaries for AGBL1-AS1 Gene

GeneCards Summary for AGBL1-AS1 Gene

AGBL1-AS1 (AGBL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGBL1-AS1 Gene

Genomics for AGBL1-AS1 Gene

Regulatory Elements for AGBL1-AS1 Gene

Enhancers for AGBL1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G086316 0.5 ENCODE 8.3 +0.2 211 1.9 RFX1 BMI1 EP300 AGBL1-AS1 ENSG00000200206
GH15G086334 0.5 ENCODE 7.9 -19.0 -18968 2.6 ZNF146 FOS MNT BMI1 AGBL1-AS1 GC15M086253 GC15P086361
GH15G086300 0.4 ENCODE 6.4 +16.2 16201 0.9 SMARCA4 EP300 AGBL1-AS1 ENSG00000200206
GH15G086232 0.8 Ensembl ENCODE 0.2 +84.6 84573 0.4 CTCF ZNF654 MAX SMC3 FOS RAD21 FOXA1 ENSG00000200206 AGBL1-AS1
GH15G086233 0.6 ENCODE 0.2 +84.9 84859 0.2 CTCF ZNF654 MAX RAD21 FOXA1 JUND SMC3 FOS ENSG00000200206 AGBL1-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AGBL1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for AGBL1-AS1 Gene

Chromosome:
15
Start:
86,295,649 bp from pter
End:
86,317,173 bp from pter
Size:
21,525 bases
Orientation:
Minus strand

Genomic View for AGBL1-AS1 Gene

Genes around AGBL1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGBL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGBL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGBL1-AS1 Gene

Proteins for AGBL1-AS1 Gene

Post-translational modifications for AGBL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGBL1-AS1 Gene

Domains & Families for AGBL1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AGBL1-AS1 Gene

Function for AGBL1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGBL1-AS1 Gene

Localization for AGBL1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AGBL1-AS1 Gene

Pathways & Interactions for AGBL1-AS1 Gene

SuperPathways for AGBL1-AS1 Gene

No Data Available

Interacting Proteins for AGBL1-AS1 Gene

Gene Ontology (GO) - Biological Process for AGBL1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AGBL1-AS1 Gene

Drugs & Compounds for AGBL1-AS1 Gene

No Compound Related Data Available

Transcripts for AGBL1-AS1 Gene

mRNA/cDNA for AGBL1-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for AGBL1-AS1 Gene

No ASD Table

Relevant External Links for AGBL1-AS1 Gene

GeneLoc Exon Structure for
AGBL1-AS1
ECgene alternative splicing isoforms for
AGBL1-AS1

Expression for AGBL1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AGBL1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for AGBL1-AS1 Gene

This gene is overexpressed in Testis (x43.9).
genes like me logo Genes that share expression patterns with AGBL1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AGBL1-AS1 Gene

Orthologs for AGBL1-AS1 Gene

Evolution for AGBL1-AS1 Gene

ENSEMBL:
Gene Tree for AGBL1-AS1 (if available)
TreeFam:
Gene Tree for AGBL1-AS1 (if available)

No data available for Orthologs for AGBL1-AS1 Gene

Paralogs for AGBL1-AS1 Gene

No data available for Paralogs for AGBL1-AS1 Gene

Variants for AGBL1-AS1 Gene

Sequence variations from dbSNP and Humsavar for AGBL1-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000010333 -- 86,301,599(+) GATAA(A/G)TATTA intron-variant
rs1000048364 -- 86,311,049(+) CAGCC(C/G)TCAGA intron-variant
rs1000064234 -- 86,301,313(+) GGACA(C/T)AGGGA intron-variant
rs1000142864 -- 86,311,251(+) CCTTT(A/G)GCAGG intron-variant
rs1000241854 -- 86,306,118(+) ATGGA(A/C/G)AATGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AGBL1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv519797 CNV gain 19592680
nsv833080 CNV gain 17160897

Relevant External Links for AGBL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGBL1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AGBL1-AS1 Gene

Disorders for AGBL1-AS1 Gene

Relevant External Links for AGBL1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AGBL1-AS1

No disorders were found for AGBL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGBL1-AS1 Gene

Publications for AGBL1-AS1 Gene

  1. Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans. (PMID: 23400010) Del-Aguila J.L. … Boerwinkle E. (Pharmacogenomics J. 2013) 3 64
  2. Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus. (PMID: 22961001) Su Z. … . (Nat. Genet. 2012) 3 64

Products for AGBL1-AS1 Gene

Sources for AGBL1-AS1 Gene

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