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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

AGAP9 Gene

protein-coding   GIFtS: 34
GCID: GC10P048189

ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain...

(Previous names: centaurin, gamma-like family, member 6)
(Previous symbol: CTGLF6)
  Search for AGAP9
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 91 2     AGAP-92 3
CTGLF61 2 3     Arf-GAP With GTPase, ANK Repeat And PH Domain-Containing Protein 92
Centaurin, Gamma-Like Family, Member 61 2     bA301J7.22
Centaurin-Gamma-Like Family Member 62 3     

External Ids:    HGNC: 234631   Entrez Gene: 6425172   Ensembl: ENSG000001980357   UniProtKB: Q5VTM23   

Export aliases for AGAP9 gene to outside databases

Previous GC identifers: GC10P047809 GC10P047834 GC10P048214


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for AGAP9 Gene: 
AGAP9 (ArfGAP with GTPase domain, ankyrin repeat and PH domain 9) is a protein-coding gene. GO annotations related to this gene include GTP binding and GTPase activity. An important paralog of this gene is AGAP5.

UniProtKB/Swiss-Prot: AGAP9_HUMAN, Q5VTM2
Function: Putative GTPase-activating protein (Potential)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000010.10  NC_018921.2  NT_030772.10  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the AGAP9 gene promoter:
         Sox5   AML1a   FOXL1   Egr-4   CREB   HFH-1   FOXJ2 (long isoform)   deltaCREB   FOXJ2   Pax-4a   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for AGAP9

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat AGAP9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10q11.22   Ensembl cytogenetic band:  10q11.22   HGNC cytogenetic band: 10q11.22

AGAP9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
AGAP9 gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10P048189:  view genomic region     (about GC identifiers)

Start:
48,189,612 bp from pter      End:
48,237,508 bp from pter
Size:
47,897 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: AGAP9_HUMAN, Q5VTM2 (See protein sequence)
Recommended Name: Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9  
Size: 703 amino acids; 77972 Da
Miscellaneous: Encoded by one of the numerous copies of centaurin gamma-like genes clustered in the q11 region of
chromosome 10
Sequence caution: Sequence=CAH72201.1; Type=Erroneous gene model prediction;
Secondary accessions: D3YTF3
Alternative splicing: 2 isoforms:  Q5VTM2-1   Q5VTM2-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for AGAP9: NX_Q5VTM2

Explore proteomics data for AGAP9 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q5VTM2

  • AGAP9 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    AGAP9 Protein Expression
    REFSEQ proteins: NP_001177739.1  
    ENSEMBL proteins: 
     ENSP00000403270   ENSP00000396454  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    PLEKH: Pleckstrin homology (PH) domain containing
    ANKRD: Ankyrin repeat domain containing
    ArfGAP: ADP-ribosylation factor GTPase activating proteins

    5/6 InterPro protein domains (see all 6):
     IPR027417 P-loop_NTPase
     IPR000795 EF_GTP-bd_dom
     IPR001849 Pleckstrin_homology
     IPR001164 ArfGAP
     IPR020683 Ankyrin_rpt-contain_dom

    Graphical View of Domain Structure for InterPro Entry Q5VTM2

    ProtoNet protein and cluster: Q5VTM2

    UniProtKB/Swiss-Prot: AGAP9_HUMAN, Q5VTM2
    Similarity: Belongs to the centaurin gamma-like family
    Similarity: Contains 1 ANK repeat
    Similarity: Contains 1 Arf-GAP domain
    Similarity: Contains 1 PH domain


    AGAP9 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: AGAP9_HUMAN, Q5VTM2
    Function: Putative GTPase-activating protein (Potential)

         Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003924GTPase activity ----
    GO:0005515protein binding ----
    GO:0005525GTP binding ----
    GO:0005543phospholipid binding IEA--
    GO:0008060ARF GTPase activator activity IEA--
         
    AGAP9 for ontologies           About GeneDecksing


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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for AGAP9

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0032312regulation of ARF GTPase activity IEA--

    AGAP9 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for AGAP9

    Search CenterWatch for drugs/clinical trials and news about AGAP9

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for AGAP9 gene: 
    NM_001190810.1  

    Unigene Clusters for AGAP9:

    ArfGAP with GTPase domain, ankyrin repeat and PH domain 9
    Hs.645346  [show with all ESTs], Hs.742298  [show with all ESTs]
    Unigene Representative Sequences: AK160375, AK096908
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000456984(uc001jeu.3 uc009xnl.2) ENST00000453919(uc001jet.3)

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    Additional mRNA sequence: AK096908.1 

    17 DOTS entries:

    DT.95194678  DT.95196206  DT.99976048  DT.121282381  DT.309861  DT.92443629  DT.121289041  DT.91749248 
    DT.75100190  DT.100008541  DT.100660981  DT.102828606  DT.121280386  DT.121288890  DT.121289027  DT.92455912 
    DT.95274220 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    AGAP9 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    AGAP9 Expression
    About this image


    See AGAP9 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for AGAP9

    SOURCE GeneReport for Unigene clusters: Hs.645346 Hs.742298
        SABiosciences Custom PCR Arrays for AGAP9
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for AGAP9

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for AGAP9 gene from 5/12 species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves AGAP16
    Uncharacterized protein
    48(a)
    possible ortholog
    7(5139160-5321453)
    lizard
    (Anolis carolinensis)
    Reptilia --
    AGAP16
    Uncharacterized protein
    6(a)
    55(a)
    possible ortholog
    possible ortholog
    1(119461547-119529618)
    1(119629499-119789786)
    zebrafish
    (Danio rerio)
    Actinopterygii AGAP16
    Uncharacterized protein
    39(a)
    1 → many
    6(15961367-16311293)
    fruit fly
    (Drosophila melanogaster)
    Insecta cenG1A6
    centaurin gamma 1A
    21(a)
    1 → many
    2L(13835567-13898715)
    worm
    (Caenorhabditis elegans)
    Secernentea cnt-26
    Protein CNT-2, isoform b
    16(a)
    1 → many
    III(10655770-10677522)
            Species with no ortholog for AGAP9

    ENSEMBL Gene Tree for AGAP9 (if available)
    TreeFam Gene Tree for AGAP9 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for AGAP9 gene
    AGAP101 2  AGAP41 2  AGAP81 2  AGAP51 2  AGAP71 2  AGAP61 2  AGAP11  ASAP12  
    ARAP32  ACAP22  ACAP32  ASAP22  ARAP12  AGAP32  ARAP22  AGAP22  
    AGAP12  ACAP12  ASAP32  
    17 SIMAP similar genes for AGAP9 using alignment to 1 protein entry:     AGAP9_HUMAN:
    AGAP4    AGAP11    AGAP10    CENTG2    AGAP6    AGAP7
    CTGLF11P    AGAP5    AGAP8    AGAP1    DKFZp761E2216    FLJ00312
    AGAP3    CENTG3    ARFGAP1    AGAP2    ARFGAP3

    AGAP9 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10 SNPs in AGAP9 are shown    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 10 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1909360001,2
    --48234754(+) AGCTAA/GGAAAT 1 -- int10--------
    rs2002838651,2
    F--48235892(+) TCCACC/TGACTC 2 P L mis11Minor allele frequency- T:0.19EU 587
    rs2006517671,2
    F--48235983(+) CGCTGG/ATCCAA 2 /* /W stg11Minor allele frequency- A:0.00EU 593
    rs2017491211,2
    F--48236067(+) GGGAGC/TGGCAG 2 S syn11Minor allele frequency- T:0.01EU 543
    rs1996685511,2
    F--48236115(+) AGTGGA/GAAATG 2 G syn11Minor allele frequency- G:0.01EU 501
    rs1996387101,2
    ----48235975(+) GGTCCA/GTGCGC 2 M V mis11Minor allele frequency- G:0.00EU 567
    rs2018746031,2
    ----48235838(+) CATTAT/CGAAGA 2 /T /M mis11Minor allele frequency- C:0.00EU 593
    rs2012180781,2
    ----48235951(+) ACACAC/ACCACC 2 /T /P mis11Minor allele frequency- A:0.00EU 593
    rs2010480011,2
    ----48235833(+) GTGCAC/TATTAT 2 H syn11Minor allele frequency- T:0.00EU 593
    rs2004071691,2
    ----48221572(+) ATTGAT/CAGTTT 1 -- int11Minor allele frequency- C:0.01EU 107

    HapMap Linkage Disequilibrium report for AGAP9 (48189612 - 48237508 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 10/42 variations for AGAP9 (see all 42):    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2736152CNV Deletion23290073
    nsv436102CNV Deletion17901297
    esv2736163CNV Deletion23290073
    esv2663732CNV Deletion23128226
    esv2750898CNV Loss17911159
    nsv895135CNV Loss21882294
    dgv23e55CNV Loss17911159
    dgv667n71CNV Loss21882294
    nsv831854CNV Gain17160897
    nsv831860CNV Gain17160897

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for AGAP9 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with AGAP9)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)2 Deloukas P.... Rogers J. (2004)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 642517 HGNC: 23463 Ensembl:ENSG00000198035 euGenes: HUgn642517 ECgene: AGAP9
    H-InvDB: AGAP9

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for AGAP9 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for AGAP9 gene:
    Search GeneIP for patents involving AGAP9

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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