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Aliases for AGAP6 Gene

Aliases for AGAP6 Gene

  • ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 6 2 3
  • Centaurin, Gamma-Like Family, Member 3 2 3
  • Centaurin-Gamma-Like Family Member 3 3 4
  • CTGLF3 3 4
  • AGAP-6 3 4
  • Arf-GAP With GTPase, ANK Repeat And PH Domain-Containing Protein 6 3
  • BA324H6.1 3

External Ids for AGAP6 Gene

Previous HGNC Symbols for AGAP6 Gene

  • CTGLF3

Previous GeneCards Identifiers for AGAP6 Gene

  • GC10P051420
  • GC10P051748

Summaries for AGAP6 Gene

GeneCards Summary for AGAP6 Gene

AGAP6 (ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 6) is a Protein Coding gene. GO annotations related to this gene include phospholipid binding. An important paralog of this gene is ASAP3.

UniProtKB/Swiss-Prot for AGAP6 Gene

  • Putative GTPase-activating protein.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGAP6 Gene

Genomics for AGAP6 Gene

Regulatory Elements for AGAP6 Gene

Genomic Location for AGAP6 Gene

49,973,136 bp from pter
50,010,499 bp from pter
37,364 bases
Plus strand

Genomic View for AGAP6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for AGAP6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGAP6 Gene

Proteins for AGAP6 Gene

  • Protein details for AGAP6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 6
    Protein Accession:
    Secondary Accessions:

    Protein attributes for AGAP6 Gene

    663 amino acids
    Molecular mass:
    73127 Da
    Quaternary structure:
    No Data Available
    • Encoded by one of the numerous copies of centaurin gamma-like genes clustered in the q11 region of chromosome 10
    • Sequence=BC131545; Type=Frameshift; Positions=Several; Evidence={ECO:0000305};

    Alternative splice isoforms for AGAP6 Gene


neXtProt entry for AGAP6 Gene

Proteomics data for AGAP6 Gene at MOPED

Post-translational modifications for AGAP6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for AGAP6 Gene

No data available for DME Specific Peptides for AGAP6 Gene

Domains for AGAP6 Gene

Gene Families for AGAP6 Gene

  • ANKRD :Ankyrin repeat domain containing
  • ArfGAP :ADP-ribosylation factor GTPase activating proteins
  • PLEKH :Pleckstrin homology (PH) domain containing

Suggested Antigen Peptide Sequences for AGAP6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Q5VW22
  • Contains 1 Arf-GAP domain.
  • Contains 1 PH domain.
  • Belongs to the centaurin gamma-like family.
  • Contains 2 ANK repeats.
genes like me logo Genes that share domains with AGAP6: view

Function for AGAP6 Gene

Molecular function for AGAP6 Gene

UniProtKB/Swiss-Prot Function:
Putative GTPase-activating protein.

Gene Ontology (GO) - Molecular Function for AGAP6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005096 GTPase activator activity IEA --
GO:0005515 protein binding --
GO:0008270 zinc ion binding IEA --
genes like me logo Genes that share ontologies with AGAP6: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for AGAP6 Gene

Localization for AGAP6 Gene

Subcellular locations from

Jensen Localization Image for AGAP6 Gene COMPARTMENTS Subcellular localization image for AGAP6 gene
Compartment Confidence
cytosol 3
nucleus 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for AGAP6 Gene

Pathways for AGAP6 Gene

SuperPathways for AGAP6 Gene

No Data Available

Interacting Proteins for AGAP6 Gene

Gene Ontology (GO) - Biological Process for AGAP6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0043547 positive regulation of GTPase activity IEA --
genes like me logo Genes that share ontologies with AGAP6: view

No data available for Pathways by source for AGAP6 Gene

Transcripts for AGAP6 Gene

mRNA/cDNA for AGAP6 Gene

(1) Additional mRNA sequences :
(7) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AGAP6 Gene

ArfGAP with GTPase domain, ankyrin repeat and PH domain 6:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for AGAP6

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for AGAP6 Gene

No ASD Table

Relevant External Links for AGAP6 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for AGAP6 Gene

mRNA expression in normal human tissues for AGAP6 Gene

SOURCE GeneReport for Unigene cluster for AGAP6 Gene Hs.536158

genes like me logo Genes that share expressions with AGAP6: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for AGAP6 Gene

Orthologs for AGAP6 Gene

This gene was present in the common ancestor of animals.

Orthologs for AGAP6 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CTGLF2 35
  • 97.78 (n)
  • 95.49 (a)
-- 36
  • 95 (a)
(Monodelphis domestica)
Mammalia -- 36
  • 73 (a)
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 45 (a)
(Gallus gallus)
Aves -- 36
  • 57 (a)
(Anolis carolinensis)
Reptilia -- 36
  • 11 (a)
-- 36
  • 63 (a)
(Danio rerio)
Actinopterygii agap1 36
  • 47 (a)
fruit fly
(Drosophila melanogaster)
Insecta cenG1A 36
  • 26 (a)
(Caenorhabditis elegans)
Secernentea cnt-2 36
  • 20 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 34 (a)
Species with no ortholog for AGAP6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for AGAP6 Gene

Gene Tree for AGAP6 (if available)
Gene Tree for AGAP6 (if available)

Paralogs for AGAP6 Gene

Selected SIMAP similar genes for AGAP6 Gene using alignment to 1 proteins: Pseudogenes for AGAP6 Gene

genes like me logo Genes that share paralogs with AGAP6: view

Variants for AGAP6 Gene

Sequence variations from dbSNP and Humsavar for AGAP6 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs9476 -- 50,010,370(+) TCCTT(C/T)TGCCA utr-variant-3-prime
rs1057789 -- 49,980,121(+) ATATG(C/G)CCTCA upstream-variant-2KB, intron-variant
rs1058782 -- 49,981,846(+) CAGTC(A/C)CTTCA utr-variant-5-prime, intron-variant, upstream-variant-2KB
rs2490919 -- 49,997,960(+) gaatt(C/T)attcc intron-variant
rs2573433 -- 49,983,504(+) GGTCC(A/G)TTTTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AGAP6 Gene

Variant ID Type Subtype PubMed ID
dgv273e1 CNV Complex 17122850
nsv428232 CNV Gain+Loss 18775914
nsv895383 CNV Loss 21882294
nsv518071 CNV Gain 19592680
nsv895389 CNV Gain 21882294
essv19403 CNV CNV 17122850
nsv8655 CNV Loss 18304495
esv26750 CNV Loss 19812545

Relevant External Links for AGAP6 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for AGAP6 Gene

Disorders for AGAP6 Gene

No disorders were found for AGAP6 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for AGAP6 Gene

Publications for AGAP6 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for AGAP6 Gene

Sources for AGAP6 Gene

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