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Aliases for AGAP6 Gene

Aliases for AGAP6 Gene

  • ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 6 2 3 5
  • Centaurin-Gamma-Like Family Member 3 3 4
  • CTGLF3 3 4
  • AGAP-6 3 4
  • Arf-GAP With GTPase, ANK Repeat And PH Domain-Containing Protein 6 3
  • Centaurin, Gamma-Like Family, Member 3 2
  • BA324H6.1 3

External Ids for AGAP6 Gene

Previous HGNC Symbols for AGAP6 Gene

  • CTGLF3

Previous GeneCards Identifiers for AGAP6 Gene

  • GC10P051420
  • GC10P051748

Summaries for AGAP6 Gene

GeneCards Summary for AGAP6 Gene

AGAP6 (ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 6) is a Protein Coding gene. GO annotations related to this gene include GTPase activator activity. An important paralog of this gene is AGAP5.

UniProtKB/Swiss-Prot for AGAP6 Gene

  • Putative GTPase-activating protein.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGAP6 Gene

Genomics for AGAP6 Gene

Regulatory Elements for AGAP6 Gene

Enhancers for AGAP6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F049830 1.1 FANTOM5 Ensembl ENCODE 46.2 -141.5 -141485 2.9 ZNF146 ZNF211 TEAD4 ETS1 AGAP6 WASHC2A GC10M049833 GC10P049816
GH10F049835 1.1 FANTOM5 ENCODE 34.9 -135.7 -135746 4.4 ELF3 DRAP1 SAP130 ZNF384 CEBPG THRB ZNF644 YY1 NFE2 NR2F6 AGAP6 SLC9A3P3 GC10M049833 RPL35AP24
GH10F050067 1.1 ENCODE 29.4 +95.0 95032 1.5 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 ZNF416 ZNF143 ZNF207 LINC00843 ERCC6 WASHC2A PGBD3 PARG AGAP6 SGMS1-AS1 RNA5SP317 MAPK6PS6 PGGT1BP1
GH10F049844 0.7 ENCODE 24.4 -127.8 -127822 1.2 SOX13 CEBPB DPF2 CEBPG ZNF217 JUND CTBP1 GATA3 ZFP3 CUX1 AGAP6 BEND3P1 GC10M049833 RPL35AP24
GH10F049256 1.4 FANTOM5 Ensembl ENCODE 10.1 -716.0 -715977 0.6 HINFP DDX20 ZNF175 PTRF BACH1 PYGO2 ZNF644 IRF9 ZNF316 ZNF584 AGAP6 PARG C10orf128 GC10P049274
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AGAP6 on UCSC Golden Path with GeneCards custom track

Genomic Location for AGAP6 Gene

Chromosome:
10
Start:
49,973,060 bp from pter
End:
50,010,499 bp from pter
Size:
37,440 bases
Orientation:
Plus strand

Genomic View for AGAP6 Gene

Genes around AGAP6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGAP6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGAP6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGAP6 Gene

Proteins for AGAP6 Gene

  • Protein details for AGAP6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VW22-AGAP6_HUMAN
    Recommended name:
    Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 6
    Protein Accession:
    Q5VW22

    Protein attributes for AGAP6 Gene

    Size:
    663 amino acids
    Molecular mass:
    73127 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • Encoded by one of the numerous copies of centaurin gamma-like genes clustered in the q11 region of chromosome 10.
    SequenceCaution:
    • Sequence=BC131545; Type=Frameshift; Positions=Several; Evidence={ECO:0000305};

    Alternative splice isoforms for AGAP6 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for AGAP6 Gene

Post-translational modifications for AGAP6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for AGAP6 Gene

Domains & Families for AGAP6 Gene

Suggested Antigen Peptide Sequences for AGAP6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5VW22

UniProtKB/Swiss-Prot:

AGAP6_HUMAN :
  • Contains 1 Arf-GAP domain.
  • Belongs to the centaurin gamma-like family.
  • Contains 2 ANK repeats.
Domain:
  • Contains 1 Arf-GAP domain.
  • Contains 1 PH domain.
Family:
  • Belongs to the centaurin gamma-like family.
Similarity:
  • Contains 2 ANK repeats.
genes like me logo Genes that share domains with AGAP6: view

Function for AGAP6 Gene

Molecular function for AGAP6 Gene

UniProtKB/Swiss-Prot Function:
Putative GTPase-activating protein.

Gene Ontology (GO) - Molecular Function for AGAP6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005096 GTPase activator activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with AGAP6: view

Phenotypes for AGAP6 Gene

genes like me logo Genes that share phenotypes with AGAP6: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGAP6 Gene

Localization for AGAP6 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for AGAP6 gene
Compartment Confidence
cytosol 3
nucleus 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for AGAP6 Gene

Pathways & Interactions for AGAP6 Gene

SuperPathways for AGAP6 Gene

No Data Available

Interacting Proteins for AGAP6 Gene

Gene Ontology (GO) - Biological Process for AGAP6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0043547 positive regulation of GTPase activity IEA --
genes like me logo Genes that share ontologies with AGAP6: view

No data available for Pathways by source and SIGNOR curated interactions for AGAP6 Gene

Transcripts for AGAP6 Gene

mRNA/cDNA for AGAP6 Gene

(11) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AGAP6 Gene

ArfGAP with GTPase domain, ankyrin repeat and PH domain 6:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for AGAP6 Gene

No ASD Table

Relevant External Links for AGAP6 Gene

GeneLoc Exon Structure for
AGAP6
ECgene alternative splicing isoforms for
AGAP6

Expression for AGAP6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AGAP6 Gene

NURSA nuclear receptor signaling pathways regulating expression of AGAP6 Gene:

AGAP6

SOURCE GeneReport for Unigene cluster for AGAP6 Gene:

Hs.536158
genes like me logo Genes that share expression patterns with AGAP6: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for AGAP6 Gene

Orthologs for AGAP6 Gene

This gene was present in the common ancestor of animals.

Orthologs for AGAP6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CTGLF2 34
  • 97.78 (n)
-- 35
  • 95 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 73 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 45 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 35
  • 57 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 63 (a)
ManyToMany
-- 35
  • 11 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii agap1 35
  • 47 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta cenG1A 35
  • 26 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea cnt-2 35
  • 20 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 34 (a)
OneToMany
Species where no ortholog for AGAP6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for AGAP6 Gene

ENSEMBL:
Gene Tree for AGAP6 (if available)
TreeFam:
Gene Tree for AGAP6 (if available)

Paralogs for AGAP6 Gene

(15) SIMAP similar genes for AGAP6 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with AGAP6: view

Variants for AGAP6 Gene

Sequence variations from dbSNP and Humsavar for AGAP6 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1045726 -- 49,982,461(+) TTATC(A/G)CTGCC intron-variant
rs1057789 -- 49,980,121(+) ATATG(C/G)CCTCA intron-variant, upstream-variant-2KB
rs1058782 -- 49,981,846(+) CAGTC(A/C)CTTCA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs11002733 -- 49,981,382(+) TGTGT(A/T)TTTGA intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB
rs11002734 -- 49,981,383(+) GTGTT(C/T)TTGAC intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for AGAP6 Gene

Variant ID Type Subtype PubMed ID
esv26750 CNV loss 19812545
nsv1051087 CNV loss 25217958
nsv8655 CNV loss 18304495
nsv947999 CNV duplication 23825009
nsv950961 CNV deletion 24416366
nsv971757 CNV duplication 23825009
nsv971758 CNV duplication 23825009
nsv971760 CNV duplication 23825009
nsv971761 CNV duplication 23825009
nsv971762 CNV duplication 23825009
nsv974943 CNV duplication 23825009
nsv975702 CNV duplication 23825009
nsv982764 CNV duplication 23825009
nsv982769 CNV duplication 23825009
nsv982770 CNV duplication 23825009

Variation tolerance for AGAP6 Gene

Residual Variation Intolerance Score: 93.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.94; 87.23% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for AGAP6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGAP6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for AGAP6 Gene

Disorders for AGAP6 Gene

Relevant External Links for AGAP6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AGAP6

No disorders were found for AGAP6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGAP6 Gene

Publications for AGAP6 Gene

  1. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for AGAP6 Gene

Sources for AGAP6 Gene

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